2W0U - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF HUMAN GLYCOLATE OXIDASE IN COMPLEX WITH THE INHIBITOR 5-[(4-CHLOROPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLATE.

Authors :   J. M. Bourhis, Y. Lindqvist

Date :   10 Oct 08 (Deposition) - 10 Nov 09 (Release) - 19 Jan 10 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.84

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A  (4x)
Biol. Unit 2: B  (4x)
Biol. Unit 3: C  (4x)
Biol. Unit 4: D  (4x)

Keywords :   Flavoprotein, Glycolate Pathway, Hydroxyacid Oxidase 1, Oxidoreductase, Peroxisome, Inhibitor (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. M. Bourhis, C. Vignaud, N. Pietrancosta, F. Gueritte, D. Guenard, F. Lederer, Y. Lindqvist
Structure Of Human Glycolate Oxidase In Complex With The Inhibitor 4-Carboxy-5-[(4- Chlorophenyl)Sulfanyl]-1, 2, 3-Thiadiazole.
Acta Crystallogr. , Sect. F V. 65 1246 2009
PubMed-ID: 20054120 | Reference-DOI: 10.1107/S1744309109041670

Molecule 1 - HYDROXYACID OXIDASE 1
	Chains	:	A, B, C, D
	EC Number	:	1.1.3.15
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PTRCHISB
	Expression System Strain	:	BL21
	Expression System Taxid	:	511693
	Organ	:	LIVER
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	GLYCOLATE OXIDASE, HAOX1, GOX

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (4x)	:	A
Biological Unit 2 (4x)	:		B
Biological Unit 3 (4x)	:			C
Biological Unit 4 (4x)	:				D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 8)

No.	Name	Count	Type	Full Name
1	C7C	4	Ligand/Ion	5-[(4-CHLOROPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLATE
2	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 1 (2, 8)

No.	Name	Count	Type	Full Name
1	C7C	4	Ligand/Ion	5-[(4-CHLOROPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLATE
2	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 2 (2, 8)

No.	Name	Count	Type	Full Name
1	C7C	4	Ligand/Ion	5-[(4-CHLOROPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLATE
2	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 3 (2, 8)

No.	Name	Count	Type	Full Name
1	C7C	4	Ligand/Ion	5-[(4-CHLOROPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLATE
2	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Biological Unit 4 (2, 8)

No.	Name	Count	Type	Full Name
1	C7C	4	Ligand/Ion	5-[(4-CHLOROPHENYL)SULFANYL]-1,2,3-THIADIAZOLE-4-CARBOXYLATE
2	FMN	4	Ligand/Ion	FLAVIN MONONUCLEOTIDE

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TYR A:27 , ALA A:79 , THR A:80 , ALA A:81 , SER A:108 , SER A:109 , GLN A:130 , TYR A:132 , THR A:158 , LYS A:236 , SER A:258 , HIS A:260 , GLY A:261 , ARG A:263 , ASP A:291 , GLY A:292 , GLY A:293 , ARG A:295 , VAL A:313 , GLY A:314 , ARG A:315 , C7C A:1364	BINDING SITE FOR RESIDUE FMN A1365
2	AC2	SOFTWARE	TYR B:27 , ALA B:79 , THR B:80 , ALA B:81 , SER B:108 , SER B:109 , GLN B:130 , TYR B:132 , THR B:158 , LYS B:236 , SER B:258 , HIS B:260 , GLY B:261 , ARG B:263 , ASP B:291 , GLY B:292 , GLY B:293 , ARG B:295 , GLY B:314 , ARG B:315 , C7C B:1364	BINDING SITE FOR RESIDUE FMN B1365
3	AC3	SOFTWARE	TYR C:27 , ALA C:79 , THR C:80 , ALA C:81 , SER C:108 , SER C:109 , GLN C:130 , TYR C:132 , THR C:158 , LYS C:236 , SER C:258 , HIS C:260 , GLY C:261 , ARG C:263 , ASP C:291 , GLY C:292 , GLY C:293 , ARG C:295 , GLY C:314 , ARG C:315 , C7C C:1364	BINDING SITE FOR RESIDUE FMN C1365
4	AC4	SOFTWARE	TYR D:26 , TYR D:27 , ALA D:79 , THR D:80 , ALA D:81 , SER D:108 , SER D:109 , GLN D:130 , TYR D:132 , THR D:158 , LYS D:236 , SER D:258 , HIS D:260 , GLY D:261 , ARG D:263 , ASP D:291 , GLY D:292 , GLY D:293 , ARG D:295 , VAL D:313 , GLY D:314 , ARG D:315 , C7C D:1364	BINDING SITE FOR RESIDUE FMN D1365
5	AC5	SOFTWARE	TYR A:26 , TRP A:110 , TYR A:132 , ARG A:167 , TYR A:208 , HIS A:260 , ARG A:263 , FMN A:1365	BINDING SITE FOR RESIDUE C7C A1364
6	AC6	SOFTWARE	TYR B:26 , MET B:82 , TRP B:110 , TYR B:132 , ARG B:167 , LEU B:205 , TYR B:208 , HIS B:260 , ARG B:263 , FMN B:1365	BINDING SITE FOR RESIDUE C7C B1364
7	AC7	SOFTWARE	TYR C:26 , TRP C:110 , TYR C:132 , ARG C:167 , LEU C:205 , TYR C:208 , VAL C:209 , HIS C:260 , ARG C:263 , FMN C:1365	BINDING SITE FOR RESIDUE C7C C1364
8	AC8	SOFTWARE	TYR D:26 , TRP D:110 , TYR D:132 , ARG D:167 , LEU D:205 , TYR D:208 , HIS D:260 , ARG D:263 , FMN D:1365	BINDING SITE FOR RESIDUE C7C D1364

(no "SS Bond" information available for 2W0U)

(no "Cis Peptide Bond" information available for 2W0U)

(no "SAP(SNP)/Variant" information available for 2W0U)

Asymmetric Unit (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX1_HUMAN	258-264	4	A:258-264 B:258-264 C:258-264 D:258-264

Biological Unit 1 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX1_HUMAN	258-264	4	A:258-264 - - -

Biological Unit 2 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX1_HUMAN	258-264	4	- B:258-264 - -

Biological Unit 3 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX1_HUMAN	258-264	4	- - C:258-264 -

Biological Unit 4 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FMN_HYDROXY_ACID_DH_1	PS00557	FMN-dependent alpha-hydroxy acid dehydrogenases active site.	HAOX1_HUMAN	258-264	4	- - - D:258-264

Asymmetric Unit (8, 32)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000378789	1	ENSE00001478813	chr20:7921121-7920933	189	HAOX1_HUMAN	1-46	46	4	A:5-46 B:5-46 C:4-46 D:4-46	42 42 43 43
1.2	ENST00000378789	2	ENSE00000658559	chr20:7915282-7915131	152	HAOX1_HUMAN	46-97	52	4	A:46-97 B:46-97 C:46-97 D:46-97	52 52 52 52
1.3	ENST00000378789	3	ENSE00000658558	chr20:7895066-7894811	256	HAOX1_HUMAN	97-182	86	4	A:97-178 B:97-177 C:97-175 D:97-177	82 81 79 81
1.4	ENST00000378789	4	ENSE00000658557	chr20:7886976-7886801	176	HAOX1_HUMAN	182-241	60	4	A:204-241 B:204-241 C:204-241 D:204-241	38 38 38 38
1.5	ENST00000378789	5	ENSE00000658556	chr20:7875871-7875780	92	HAOX1_HUMAN	241-271	31	4	A:241-271 B:241-271 C:241-271 D:241-271	31 31 31 31
1.6	ENST00000378789	6	ENSE00000658555	chr20:7866511-7866353	159	HAOX1_HUMAN	272-324	53	4	A:272-324 B:272-324 C:272-324 D:272-324	53 53 53 53
1.7	ENST00000378789	7	ENSE00000658554	chr20:7866237-7866168	70	HAOX1_HUMAN	325-348	24	4	A:325-348 B:325-348 C:325-348 D:325-348	24 24 24 24
1.8	ENST00000378789	8	ENSE00001478762	chr20:7864310-7863628	683	HAOX1_HUMAN	348-370	23	4	A:348-363 B:348-363 C:348-363 D:348-363	16 16 16 16

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:334
 aligned with HAOX1_HUMAN | Q9UJM8 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:359
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354         
          HAOX1_HUMAN     5 LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 363
               SCOP domains d2w0ua_ A: automated matches                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2w0uA00 A:5-363 Aldolase class I                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhheee..............eee..eee...eee....hhhhh...hhhhhhhhhhhhh.eeee......hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh....eeee........hhhhhhh.....-------------------------hhhhhhhhhh....hhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMN_HYD--------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: A:5-46 UniProt: 1-46       --------------------------------------------------Exon 1.3  PDB: A:97-178 UniProt: 97-182 [INCOMPLETE]                                  ----------------------------------------------------------Exon 1.5  PDB: A:241-271       Exon 1.6  PDB: A:272-324 UniProt: 272-324            Exon 1.7  PDB: A:325-348--------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2  PDB: A:46-97 UniProt: 46-97               ------------------------------------------------------------------------------------Exon 1.4  PDB: A:204-241 UniProt: 182-241 [INCOMPLETE]      ----------------------------------------------------------------------------------------------------------Exon 1.8         Transcript 1 (2)
                 2w0u A   5 LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLP-------------------------GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 363
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174   |     -         -       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354         
                                                                                                                                                                                                       178                       204

Chain B from PDB  Type:PROTEIN  Length:333
 aligned with HAOX1_HUMAN | Q9UJM8 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:359
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354         
          HAOX1_HUMAN     5 LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 363
               SCOP domains d2w0ub_ B: automated matches                                                                                                                                                                                                                                                                                                                                            SCOP domains
               CATH domains 2w0uB00 B:5-363 Aldolase class I                                                                                                                                                                                                                                                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhheee..............eee..eee...eee....hhhhh..hhhhhhhhhhhhhh..eee......hhhhhhhhh....eeeee....hhhhhhhhhhhhhhh....eeee........hhhhhhh....--------------------------hhhhhhhhhh....hhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh...eeee.....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMN_HYD--------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: B:5-46 UniProt: 1-46       --------------------------------------------------Exon 1.3  PDB: B:97-177 UniProt: 97-182 [INCOMPLETE]                                  ----------------------------------------------------------Exon 1.5  PDB: B:241-271       Exon 1.6  PDB: B:272-324 UniProt: 272-324            Exon 1.7  PDB: B:325-348--------------- Transcript 1 (1)
           Transcript 1 (2) -----------------------------------------Exon 1.2  PDB: B:46-97 UniProt: 46-97               ------------------------------------------------------------------------------------Exon 1.4  PDB: B:204-241 UniProt: 182-241 [INCOMPLETE]      ----------------------------------------------------------------------------------------------------------Exon 1.8         Transcript 1 (2)
                 2w0u B   5 LICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKL--------------------------GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 363
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174  |      -         -       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354         
                                                                                                                                                                                                      177                        204

Chain C from PDB  Type:PROTEIN  Length:332
 aligned with HAOX1_HUMAN | Q9UJM8 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:360
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363
          HAOX1_HUMAN     4 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 363
               SCOP domains d2w0uc_ C: automated matches                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 2w0uC00 C:4-363 Aldolase class I                                                                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhheee..............eee..eee...eee....hhhhh..hhhhhhhhhhhhhh.eeee......hhhhhhhhh...eeeeee....hhhhhhhhhhhhhhh....eeee........hhhhhhh..----------------------------hhhhhhhhhh....hhhhhhhhhhhh...eeee...hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMN_HYD--------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: C:4-46 UniProt: 1-46        --------------------------------------------------Exon 1.3  PDB: C:97-175 UniProt: 97-182 [INCOMPLETE]                                  ----------------------------------------------------------Exon 1.5  PDB: C:241-271       Exon 1.6  PDB: C:272-324 UniProt: 272-324            Exon 1.7  PDB: C:325-348--------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.2  PDB: C:46-97 UniProt: 46-97               ------------------------------------------------------------------------------------Exon 1.4  PDB: C:204-241 UniProt: 182-241 [INCOMPLETE]      ----------------------------------------------------------------------------------------------------------Exon 1.8         Transcript 1 (2)
                 2w0u C   4 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRF----------------------------GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 363
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173 |       -         -         -|      213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363
                                                                                                                                                                                                     175                          204

Chain D from PDB  Type:PROTEIN  Length:334
 aligned with HAOX1_HUMAN | Q9UJM8 from UniProtKB/Swiss-Prot  Length:370

    Alignment length:360
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363
          HAOX1_HUMAN     4 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKLPPQLRMKNFETSTLSFSPEENFGDDSGLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 363
               SCOP domains d2w0ud_ D: automated matches                                                                                                                                                                                                                                                                                                                                             SCOP domains
               CATH domains 2w0uD00 D:4-363 Aldolase class I                                                                                                                                                                                                                                                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhheee..............eee..eee...eee....hhhhh..hhhhhhhhhhhhhh..eee......hhhhhhhhh....eeeee....hhhhhhhhhhhhhhh....eeee........hhhhhhh....--------------------------hhhhhhhhhh....hhhhhhhhhhhh...eeeeee.hhhhhhhhhhh...eeee.hhhhh......hhhhhhhhhhhhh....eeeee....hhhhhhhhhhh...eeeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh........hhh.eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------FMN_HYD--------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1  PDB: D:4-46 UniProt: 1-46        --------------------------------------------------Exon 1.3  PDB: D:97-177 UniProt: 97-182 [INCOMPLETE]                                  ----------------------------------------------------------Exon 1.5  PDB: D:241-271       Exon 1.6  PDB: D:272-324 UniProt: 272-324            Exon 1.7  PDB: D:325-348--------------- Transcript 1 (1)
           Transcript 1 (2) ------------------------------------------Exon 1.2  PDB: D:46-97 UniProt: 46-97               ------------------------------------------------------------------------------------Exon 1.4  PDB: D:204-241 UniProt: 182-241 [INCOMPLETE]      ----------------------------------------------------------------------------------------------------------Exon 1.8         Transcript 1 (2)
                 2w0u D   4 RLICINDYEQHAKSVLPKSIYDYYRSGANDEETLADNIAAFSRWKLYPRMLRNVAETDLSTSVLGQRVSMPICVGATAMQRMAHVDGELATVRACQSLGTGMMLSSWATSSIEEVAEAGPEALRWLQLYIYKDREVTKKLVRQAEKMGYKAIFVTVDTPYLGNRLDDVRNRFKL--------------------------GLAAYVAKAIDPSISWEDIKWLRRLTSLPIVAKGILRGDDAREAVKHGLNGILVSNHGARQLDGVPATIDVLPEIVEAVEGKVEVFLDGGVRKGTDVLKALALGAKAVFVGRPIVWGLAFQGEKGVQDVLEILKEEFRLAMALSGCQNVKVIDKTLVRKN 363
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173   |     -         -         -|      213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363
                                                                                                                                                                                                       177                        204

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: TIM beta/alpha-barrel (3956)

Superfamily: FMN-linked oxidoreductases (290)

Family: automated matches (48)

Protein domain: automated matches (48)

Human (Homo sapiens) [TaxId: 9606] (5)

1a	d2w0ua_	A:
1b	d2w0ub_	B:
1c	d2w0uc_	C:
1d	d2w0ud_	D:

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

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Organisms( (-)

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Class: Alpha Beta (26913)

Architecture: Alpha-Beta Barrel (2994)

Topology: TIM Barrel (2806)

Homologous Superfamily: Aldolase class I (887)

Human (Homo sapiens) (78)

1a	2w0uC00	C:4-363
1b	2w0uB00	B:5-363
1c	2w0uA00	A:5-363
1d	2w0uD00	D:4-363

(no "Pfam Domain" information available for 2W0U)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (HAOX1_HUMAN | Q9UJM8)

molecular function
	GO:0003973	(S)-2-hydroxy-acid oxidase activity	Catalysis of the reaction: (S)-2-hydroxy-acid + O2 = 2-oxo acid + hydrogen peroxide.
	GO:0010181	FMN binding	Interacting selectively and non-covalently with flavin mono nucleotide. Flavin mono nucleotide (FMN) is the coenzyme or the prosthetic group of various flavoprotein oxidoreductase enzymes.
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0008891	glycolate oxidase activity	Catalysis of the reaction: glycolate + O2 = glyoxylate + hydrogen peroxide.
	GO:0047969	glyoxylate oxidase activity	Catalysis of the reaction: glyoxylate + H(2)O + O(2) = H(2)O(2) + H(+) + oxalate.
	GO:0052853	long-chain-(S)-2-hydroxy-long-chain-acid oxidase activity	Catalysis of the reaction: long-chain-(S)-2-hydroxy-acid + O2 = long-chain-2-oxo acid + hydrogen peroxide. Long chain refers to a chain length of 14 to 18 carbons.
	GO:0052854	medium-chain-(S)-2-hydroxy-acid oxidase activity	Catalysis of the reaction: medium-chain-(S)-2-hydroxy-acid + O2 = medium-chain-2-oxo acid + hydrogen peroxide. Medium chain refers to a chain length of between 8 and 12 carbons.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005102	receptor binding	Interacting selectively and non-covalently with one or more specific sites on a receptor molecule, a macromolecule that undergoes combination with a hormone, neurotransmitter, drug or intracellular messenger to initiate a change in cell function.
	GO:0052852	very-long-chain-(S)-2-hydroxy-acid oxidase activity	Catalysis of the reaction: very-long-chain (S)-2-hydroxy-acid + O2 = very-long-chain 2-oxo acid + hydrogen peroxide. Very long chain refers to a chain length of greater than 18 carbons.
biological process
	GO:0001561	fatty acid alpha-oxidation	A metabolic pathway by which 3-methyl branched fatty acids are degraded. These compounds are not degraded by the normal peroxisomal beta-oxidation pathway, because the 3-methyl blocks the dehydrogenation of the hydroxyl group by hydroxyacyl-CoA dehydrogenase. The 3-methyl branched fatty acid is converted in several steps to pristenic acid, which can then feed into the beta-oxidative pathway.
	GO:0046296	glycolate catabolic process	The chemical reactions and pathways resulting in the breakdown of glycolate, the anion of hydroxyethanoic acid (glycolic acid).
	GO:0046487	glyoxylate metabolic process	The chemical reactions and pathways involving glyoxylate, the anion of glyoxylic acid, HOC-COOH.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
	GO:0006979	response to oxidative stress	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
cellular component
	GO:0005782	peroxisomal matrix	The volume contained within the membranes of a peroxisome; in many cells the matrix contains a crystalloid core largely composed of urate oxidase.
	GO:0005777	peroxisome	A small organelle enclosed by a single membrane, and found in most eukaryotic cells. Contains peroxidases and other enzymes involved in a variety of metabolic processes including free radical detoxification, lipid catabolism and biosynthesis, and hydrogen peroxide metabolism.

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	Cis Peptide Bonds
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	2w0u
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	HAOX1_HUMAN \| Q9UJM8
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	1.1.3.15
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	HAOX1_HUMAN \| Q9UJM8
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	HAOX1_HUMAN \| Q9UJM8	:	2nzl 2rdt 2rdu 2rdw

(no "Related Entries Specified in the PDB File" available for 2W0U)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

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PROSITE Motifs (1, 4)

Exons (8, 32)

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