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(-) Description

Title :  STRUCTURE OF A DNA BINDING WINGED-HELIX PROTEIN, F-112, FROM SULFOLOBUS SPINDLE-SHAPED VIRUS 1.
 
Authors :  S. K. Menon, P. Kraft, G. J. Corn, B. Wiedenheft, M. J. Young, C. M. Lawre
Date :  12 Mar 08  (Deposition) - 06 May 08  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Ssv, Winged-Helix, Crenarchaeal, Dna-Binding Protein, Thermophilic Protein, Sulfolobus Spindle Virus (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. K. Menon, W. S. Maaty, G. J. Corn, S. C. Kwok, B. J. Eilers, P. Kraft, E. Gillitzer, M. J. Young, B. Bothner, C. M. Lawrence
Cysteine Usage In Sulfolobus Spindle-Shaped Virus 1 And Extension To Hyperthermophilic Viruses In General.
Virology V. 376 270 2008
PubMed-ID: 18471851  |  Reference-DOI: 10.1016/J.VIROL.2008.03.026

(-) Compounds

Molecule 1 - HYPOTHETICAL 13.2 KDA PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEXP14- SSV1 F112
    Expression System Strain: B834
    Expression System Taxid: 562
    Fragment: RESIDUES 2-112
    Organism Scientific: SULFOLOBUS VIRUS-LIKE PARTICLE SSV1
    Organism Taxid: 244589
    Synonym: ORF F-112, F-112

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1MSE2Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

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(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:51 -A:58

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 Sequence-Structure Mapping

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:70
 aligned with F112_SSV1 | P20220 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:70
                                    13        23        33        43        53        63        73
             F112_SSV1    4 TLNSYKMAEIMYKILEKKGELTLEDILAQFEISVPSAYNIQRALKAICERHPDECEVQYKNRKTTFKWIK 73
               SCOP domains d2vqca1 A:4-73 F-112                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------- CATH domains
               Pfam domains F-112-2vqcA01 A:4-73                                                   Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhheehhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...eeeee....eeeee.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------- Transcript
                  2vqc A  4 TLNSYKmAEImYKILEKKGELTLEDILAQFEISVPSAYNIQRALKAICERHPDECEVQYKNRKTTFKWIK 73
                                  | 13|       23        33        43        53        63        73
                                 10-MSE                                                           
                                     14-MSE
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VQC)

(-) Pfam Domains  (1, 1)

Asymmetric/Biological Unit
(-)
Clan: HTH (544)

(-) Gene Ontology  (0, 0)

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