2VN4 - JenaLib

Title :   GLYCOSIDE HYDROLASE FAMILY 15 GLUCOAMYLASE FROM HYPOCREA JECORINA

Authors :   R. Bott, M. Sandgren, H. Hansson

Date :   30 Jan 08 (Deposition) - 20 May 08 (Release) - 20 Oct 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.85

Chains :   Asym./Biol. Unit : A

Keywords :   Hydrolase, Carbohydrate Binding, Glycoside Hydrolase Family 15, Glucoamylase, Amyloglucosidase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   R. Bott, M. Saldajeno, W. Cuevas, D. Ward, M. Scheffers, W. Aehle, S. Karkehabadi, M. Sandgren, H. Hansson
Three-Dimensional Structure Of An Intact Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina.
Biochemistry V. 47 5746 2008
PubMed-ID: 18457422 | Reference-DOI: 10.1021/BI702413K

Compounds

Molecule 1 - GLUCOAMYLASE
	Chains	:	A
	EC Number	:	3.2.1.3
	Organism Scientific	:	HYPOCREA JECORINA
	Organism Taxid	:	51453

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 13)

Asymmetric/Biological Unit (3, 13)

No.	Name	Count	Type	Full Name
1	BTB	2	Ligand/Ion	2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2	MAN	8	Ligand/Ion	ALPHA-D-MANNOSE
3	NAG	3	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Sites (13, 13)

Asymmetric Unit (13, 13)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	THR A:468	BINDING SITE FOR RESIDUE MAN A 601
02	AC2	SOFTWARE	THR A:475 , PRO A:476 , MAN A:609	BINDING SITE FOR RESIDUE MAN A 602
03	AC3	SOFTWARE	THR A:493 , ASN A:524 , TRP A:525 , NAG A:613 , HOH A:2308 , HOH A:2350	BINDING SITE FOR RESIDUE MAN A 603
04	AC4	SOFTWARE	THR A:581	BINDING SITE FOR RESIDUE MAN A 605
05	AC5	SOFTWARE	ARG A:27 , THR A:589 , HOH A:2352 , HOH A:2353	BINDING SITE FOR RESIDUE MAN A 606
06	AC6	SOFTWARE	SER A:482 , GLY A:483	BINDING SITE FOR RESIDUE MAN A 607
07	AC7	SOFTWARE	GLU A:558 , ASN A:577 , THR A:579	BINDING SITE FOR RESIDUE MAN A 608
08	AC8	SOFTWARE	SER A:473 , MAN A:602	BINDING SITE FOR RESIDUE MAN A 609
09	AC9	SOFTWARE	ASN A:171 , SER A:184 , PHE A:223 , ASN A:240 , NAG A:612 , HOH A:2134 , HOH A:2354 , HOH A:2355 , HOH A:2356	BINDING SITE FOR RESIDUE NAG A 611
10	BC1	SOFTWARE	ASN A:240 , CYS A:453 , NAG A:611 , HOH A:2357	BINDING SITE FOR RESIDUE NAG A 612
11	BC2	SOFTWARE	ASN A:524 , ALA A:584 , MAN A:603 , HOH A:2350 , HOH A:2359	BINDING SITE FOR RESIDUE NAG A 613
12	BC3	SOFTWARE	TYR A:47 , TRP A:51 , ARG A:53 , ASP A:54 , LEU A:177 , TRP A:178 , GLU A:179 , ARG A:309 , GLU A:404 , HOH A:2361	BINDING SITE FOR RESIDUE BTB A 620
13	BC4	SOFTWARE	TRP A:525 , GLU A:552 , ALA A:553 , LYS A:560 , TRP A:572 , ASN A:577	BINDING SITE FOR RESIDUE BTB A 621

SS Bonds (4, 4)

Cis Peptide Bonds (3, 3)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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Chain A from PDB  Type:PROTEIN  Length:599
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh..............................eehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhh.ee...............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...ee......eeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..ee....ee..ee..........hhhhhhhhhh.hhhhh.........hhhhhhhhhhhhhhhhh.hhhhh................hhhhh..hhhhhhhhhhhhhhhhhhhhhhheeee...hhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhhhhhhh..........ee......ee....hhhhhhhhhhhhhhhh........hhhhhh...............................................eeeeeeeee.......eeeeee.hhhhh.......ee...........eeeeeeeee...eeeeeeeee.....eee.....eeee........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vn4 A   1 SVDDFISTETPIALNNLLCNVGPDGCRAFGTSAGAVIASPSTIDPDYYYMWTRDSALVFKNLIDRFTETYDAGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFTGNWGRPQRDGPALRAIALIGYSKWLINNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEVNGSSFFTVANQHRALVEGATLAATLGQSGSAYSSVAPQVLCFLQRFWVSSGGYVDSNINTNEGRTGKDVNSVLTSIHTFDPNLGCDAGTFQPCSDKALSNLKVVVDSFRSIYGVNKGIPAGAAVAIGRYAEDVYYNGNPWYLATFAAAEQLYDAIYVWKKTGSITVTATSLAFFQELVPGVTAGTYSSSSSTFTNIINAVSTYADGFLSEAAKYVPADGSLAEQFDRNSGTPLSALHLTWSYASFLTATARRAGIVPPSWANSSASTIPSTCSGASVVGSYSRPTATSFPPSQTPKPGVPSGTPYTPLPCATPTSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYINVGQDGSVTWESDPNHTYTVPAVACVTQVVKEDTWQS 599
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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	Cis Peptide Bonds
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		Gly A:22 - Pro A:23	[ RasMol ]

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