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(-) Description

Title :  GLYCOSIDE HYDROLASE FAMILY 15 GLUCOAMYLASE FROM HYPOCREA JECORINA
 
Authors :  R. Bott, M. Sandgren, H. Hansson
Date :  31 Jan 08  (Deposition) - 20 May 08  (Release) - 20 Oct 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A
Keywords :  Glucoamylase, Glycoside Hydrolase Family 15, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Bott, M. Saldajeno, W. Cuevas, D. Ward, M. Scheffers, W. Aehle, S. Karkehabadi, M. Sandgren, H. Hansson
Three-Dimensional Structure Of An Intact Glycoside Hydrolase Family 15 Glucoamylase From Hypocrea Jecorina.
Biochemistry V. 47 5746 2008
PubMed-ID: 18457422  |  Reference-DOI: 10.1021/BI702413K

(-) Compounds

Molecule 1 - GLUCOAMYLASE
    Chains: A
    EC Number: 3.2.1.3
    Organism Scientific: HYPOCREA JECORINA
    Organism Taxid: 51453

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1BTB1Ligand/Ion2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
2CA1Ligand/IonCALCIUM ION
3MAN4Ligand/IonALPHA-D-MANNOSE
4NAG2Ligand/IonN-ACETYL-D-GLUCOSAMINE

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:468 , ALA A:520 , GLU A:552 , ASP A:555BINDING SITE FOR RESIDUE MAN A 601
2AC2SOFTWAREPRO A:23 , THR A:31 , SER A:32 , THR A:579 , THR A:581 , MAN A:608BINDING SITE FOR RESIDUE MAN A 605
3AC3SOFTWAREARG A:27 , GLN A:148 , LEU A:206 , GLY A:207 , THR A:589 , HOH A:2333 , HOH A:2344BINDING SITE FOR RESIDUE MAN A 606
4AC4SOFTWARELYS A:114 , GLU A:558 , ASN A:577 , THR A:579 , MAN A:605BINDING SITE FOR RESIDUE MAN A 608
5AC5SOFTWAREASN A:171 , GLN A:172 , THR A:173 , SER A:184 , PHE A:223 , ASN A:240 , CYS A:453 , GLY A:455 , NAG A:612 , HOH A:2297 , HOH A:2347 , HOH A:2348 , HOH A:2349BINDING SITE FOR RESIDUE NAG A 611
6AC6SOFTWAREASN A:240 , CYS A:453 , NAG A:611BINDING SITE FOR RESIDUE NAG A 612
7AC7SOFTWARETYR A:47 , TRP A:51 , ARG A:53 , ASP A:54 , LEU A:177 , TRP A:178 , GLU A:179 , ARG A:309 , TRP A:321 , GLU A:404BINDING SITE FOR RESIDUE BTB A 620
8AC8SOFTWAREASP A:236 , ASN A:238 , GLU A:243 , HOH A:2143 , HOH A:2148BINDING SITE FOR RESIDUE CA A 650

(-) SS Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1A:19 -A:26
2A:222 -A:453
3A:266 -A:274
4A:491 -A:587

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Gly A:22 -Pro A:23
2Asp A:44 -Pro A:45
3Arg A:122 -Pro A:123
4Asp A:575 -Pro A:576

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VN7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2VN7)

(-) Exons   (0, 0)

(no "Exon" information available for 2VN7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:599
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh..............................eehhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh.........hhhhhh.ee...............hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhh...ee......eeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..ee....ee..ee.........hhhhhhhhhhh.hhhhh.........hhhhhhhhhhhhhhhhh.hhhhh................hhhhh..hhhhhhhhhhhhhhhhhhhhhhheeee...hhhhhhhhh.....eeee..hhhhhhhhhhhhhhhhhhhhhhhh..........ee......ee....hhhhhhhhhhhhhhhh........hhhhhh...............................................eeeeeeeee.......eeeeee.hhhhh.......ee...........eeeeeeeee...eeeeeeeee.....eee.....eeee........eeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vn7 A   1 SVDDFISTETPIALNNLLCNVGPDGCRAFGTSAGAVIASPSTIDPDYYYMWTRDSALVFKNLIDRFTETYDAGLQRRIEQYITAQVTLQGLSNPSGSLADGSGLGEPKFELTLKPFTGNWGRPQRDGPALRAIALIGYSKWLINNNYQSTVSNVIWPIVRNDLNYVAQYWNQTGFDLWEEVNGSSFFTVANQHRALVEGATLAATLGQSGSAYSSVAPQVLCFLQRFWVSSGGYVDSNINTNEGRTGKDVNSVLTSIHTFDPNLGCDAGTFQPCSDKALSNLKVVVDSFRSIYGVNKGIPAGAAVAIGRYAEDVYYNGNPWYLATFAAAEQLYDAIYVWKKTGSITVTATSLAFFQELVPGVTAGTYSSSSSTFTNIINAVSTYADGFLSEAAKYVPADGSLAEQFDRNSGTPLSALHLTWSYASFLTATARRAGIVPPSWANSSASTIPSTCSGASVVGSYSRPTATSFPPSQTPKPGVPSGTPYTPLPCATPTSVAVTFHELVSTQFGQTVKVAGNAAALGNWSTSAAVALDAVNYADNHPLWIGTVNLEAGDVVEYKYINVGQDGSVTWESDPNHTYTVPAVACVTQVVKEDTWQS 599
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2VN7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2VN7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2VN7)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2VN7)

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  Cis Peptide Bonds
    Arg A:122 - Pro A:123   [ RasMol ]  
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    Asp A:575 - Pro A:576   [ RasMol ]  
    Gly A:22 - Pro A:23   [ RasMol ]  
 

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 Related Entries

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(-) Related Entries Specified in the PDB File

2vn4 GLYCOSIDE HYDROLASE FAMILY 15 GLUCOAMYLASE FROM HYPOCREA JECORINA