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(-) Description

Title :  FTSZ GDP M. JANNASCHII
 
Authors :  M. A. Oliva, J. Lowe
Date :  03 Sep 07  (Deposition) - 11 Sep 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.70
Chains :  Asym./Biol. Unit :  A
Keywords :  Cell Division, Polymerization, Tubulin Homolog, Gtpase, Septation, Cell Cycle, Gtp-Binding, Nucleotide-Binding, Bacterial Cell Division Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  M. A. Oliva, D. Trambaiolo, J. Lowe
Structural Insights Into The Conformational Variability Of Ftsz
J. Mol. Biol. V. 373 1229 2007
PubMed-ID: 17900614  |  Reference-DOI: 10.1016/J.JMB.2007.08.056

(-) Compounds

Molecule 1 - CELL DIVISION PROTEIN FTSZ HOMOLOG 1
    Atcc43067
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPHIS17
    Expression System StrainBL21AI(DE3)
    Expression System Taxid469008
    Expression System Vector TypePLASMID
    Organism ScientificMETHANOCALDOCOCCUS JANNASCHII
    Organism Taxid243232
    StrainDSM 2661
    SynonymFTSZ

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric/Biological Unit (1, 1)
No.NameCountTypeFull Name
1GDP1Ligand/IonGUANOSINE-5'-DIPHOSPHATE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREGLY A:46 , GLY A:47 , ALA A:48 , GLY A:130 , LEU A:131 , GLY A:133 , GLY A:134 , THR A:135 , GLY A:136 , PRO A:161 , GLU A:165 , ARG A:169 , PHE A:208 , ALA A:211 , ASP A:212 , HOH A:2025 , HOH A:2130 , HOH A:2131 , HOH A:2190 , HOH A:2293 , HOH A:2294 , HOH A:2295 , HOH A:2296 , HOH A:2297 , HOH A:2298 , HOH A:2299BINDING SITE FOR RESIDUE GDP A1355

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2VAP)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2VAP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2VAP)

(-) PROSITE Motifs  (2, 2)

Asymmetric/Biological Unit (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FTSZ_1PS01134 FtsZ protein signature 1.FTSZ1_METJA70-104  1A:70-104
2FTSZ_2PS01135 FtsZ protein signature 2.FTSZ1_METJA123-144  1A:123-144

(-) Exons   (0, 0)

(no "Exon" information available for 2VAP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:335
 aligned with FTSZ1_METJA | Q57816 from UniProtKB/Swiss-Prot  Length:364

    Alignment length:335
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349     
          FTSZ1_METJA    20 LELSPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQSRIEFTDTGLKRK 354
               SCOP domains d2vapa1 A:20-231 Cell-division protein FtsZ                                                                                                                                                                         d2vapa2 A:232-354 Cell-division protein FtsZ                                                                                SCOP domains
               CATH domains ------------------2vapA01 A:38-249  [code=3.40.50.1440, no name defined]                                                                                                                                                              2vapA02 A:250-354  [code=3.30.1330.20, no name defined]                                                   CATH domains
               Pfam domains -------------------Tubulin-2vapA02 A:39-210                                                                                                                                                    ------------------------------------FtsZ_C-2vapA01 A:247-341                                                                       ------------- Pfam domains
         Sec.struct. author ...hhhhhhhhhhhhh....eeeeeehhhhhhhhhhhhhhh...eeeeeee.hhhhhhh....eeee.............hhhhhhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhh...eeeeee..hhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh..eeeeeeeeee...hhhhhhhhhhhh......hhhhh.eeeeeeee....hhhhhhhhhhhhhhhh....eeeeeeee.......eeeeeeee.hhh.eeee..eeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------FTSZ_1  PDB: A:70-104              ------------------FTSZ_2  PDB: A:123-144------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2vap A  20 LELSPEDKELLEYLQQTKAKITVVGCGGAGNNTITRLKMEGIEGAKTVAINTDAQQLIRTKADKKILIGKKLTRGLGAGGNPKIGEEAAKESAEEIKAAIQDSDMVFITCGLGGGTGTGSAPVVAEISKKIGALTVAVVTLPFVMEGKVRMKNAMEGLERLKQHTDTLVVIPNEKLFEIVPNMPLKLAFKVADEVLINAVKGLVELITKDGLINVDFADVKAVMNNGGLAMIGIGESDSEKRAKEAVSMALNSPLLDVDIDGATGALIHVMGPEDLTLEEAREVVATVSSRLDPNATIIWGATIDENLENTVRVLLVITGVQSRIEFTDTGLKRK 354
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349     

   Legend:   → Mismatch (orange background)
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    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 2)

Asymmetric/Biological Unit

(-) CATH Domains  (2, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 2)

Asymmetric/Biological Unit

(-) Gene Ontology  (9, 9)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A   (FTSZ1_METJA | Q57816)
molecular function
    GO:0005525    GTP binding    Interacting selectively and non-covalently with GTP, guanosine triphosphate.
    GO:0003924    GTPase activity    Catalysis of the reaction: GTP + H2O = GDP + phosphate.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0043093    FtsZ-dependent cytokinesis    A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
    GO:0007049    cell cycle    The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
    GO:0051301    cell division    The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
    GO:0051258    protein polymerization    The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
cellular component
    GO:0032153    cell division site    The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        FTSZ1_METJA | Q578161fsz 1w58 1w59 1w5a 1w5b 1w5e

(-) Related Entries Specified in the PDB File

1fsz CRYSTAL STRUCTURE OF THE CELL-DIVISION PROTEIN FTSZ AT 2.8ARESOLUTION
1w58 FTSZ GMPCPP SOAK I213 (M. JANNASCHII)
1w59 FTSZ DIMER, EMPTY (M. JANNASCHII)
1w5a FTSZ DIMER, MGGTP SOAK (M. JANNASCHII)
1w5b FTSZ DIMER, GTP SOAK (M. JANNASCHII)
1w5e FTSZ W319Y MUTANT, P1 (M. JANNASCHII)