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(-) Description

Title :  SECOND LRR DOMAIN OF HUMAN SLIT2
 
Authors :  C. Morlot, S. Cusack, A. A. Mccarthy
Date :  25 Aug 07  (Deposition) - 25 Sep 07  (Release) - 05 Nov 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Keywords :  Developmental Protein, Structural Protein, Neurogenesis, Differentiation, Egf-Like Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  C. Morlot, N. M. Thielens, R. B. Ravelli, W. Hemrika, R. A. Romijn, P. Gros, S. Cusack, A. A. Mccarthy
Structural Insights Into The Slit-Robo Complex.
Proc. Nat. Acad. Sci. Usa V. 104 14923 2007
PubMed-ID: 17848514  |  Reference-DOI: 10.1073/PNAS.0705310104
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - SLIT HOMOLOG 2 PROTEIN N-PRODUCT
    ChainsA, B, C, D
    EngineeredYES
    Expression SystemHOMO SAPIENS
    Expression System Cell LineHEK293-EBNA1
    Expression System Taxid9606
    Expression System VectorMODIFIED PTT3
    FragmentSECOND LRR DOMAIN, RESIDUES 272-479
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymSLIT-2, SLIT2, SLIT HOMOLOG 2 PROTEIN

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit ABCD
Biological Unit 1 (1x)A   
Biological Unit 2 (1x) B  
Biological Unit 3 (1x)  C 
Biological Unit 4 (1x)   D

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1CSD4Mod. Amino Acid3-SULFINOALANINE
2GOL1Ligand/IonGLYCEROL
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE
2GOL-1Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 2 (2, 2)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE
2GOL1Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 3 (1, 1)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE
2GOL-1Ligand/IonGLYCEROL
3PEG-1Ligand/IonDI(HYDROXYETHYL)ETHER
Biological Unit 4 (2, 2)
No.NameCountTypeFull Name
1CSD1Mod. Amino Acid3-SULFINOALANINE
2GOL-1Ligand/IonGLYCEROL
3PEG1Ligand/IonDI(HYDROXYETHYL)ETHER

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG D:328 , SER D:352 , VAL D:354 , TYR D:356 , LEU D:376BINDING SITE FOR RESIDUE PEG D1479
2AC2SOFTWARELYS B:365 , SER B:366 , GLU B:369 , ASP B:390 , GLN B:393BINDING SITE FOR RESIDUE GOL B1479

(-) SS Bonds  (16, 16)

Asymmetric Unit
No.Residues
1A:273 -A:279
2A:277 -A:286
3A:434 -A:457
4A:436 -A:478
5B:273 -B:279
6B:277 -B:286
7B:434 -B:457
8B:436 -B:478
9C:273 -C:279
10C:277 -C:286
11C:434 -C:457
12C:436 -C:478
13D:273 -D:279
14D:277 -D:286
15D:434 -D:457
16D:436 -D:478

(-) Cis Peptide Bonds  (4, 4)

Asymmetric Unit
No.Residues
1Ser A:459 -Pro A:460
2Ser B:459 -Pro B:460
3Ser C:459 -Pro C:460
4Ser D:459 -Pro D:460

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2V9S)

(-) PROSITE Motifs  (1, 20)

Asymmetric Unit (1, 20)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.SLIT2_HUMAN56-77
80-101
104-125
128-149
152-173
176-197
200-221
301-322
 
 
 
325-346
 
 
 
349-370
 
 
 
373-394
 
 
 
397-418
 
 
 
559-580
607-628
631-652
655-676
778-799
755-777
802-823
826-847
  20-
-
-
-
-
-
-
A:301-322
B:301-322
C:301-322
D:301-322
A:325-346
B:325-346
C:325-346
D:325-346
A:349-370
B:349-370
C:349-370
D:349-370
A:373-394
B:373-394
C:373-394
D:373-394
A:397-418
B:397-418
C:397-418
D:397-418
-
-
-
-
-
-
-
-
Biological Unit 1 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.SLIT2_HUMAN56-77
80-101
104-125
128-149
152-173
176-197
200-221
301-322
 
 
 
325-346
 
 
 
349-370
 
 
 
373-394
 
 
 
397-418
 
 
 
559-580
607-628
631-652
655-676
778-799
755-777
802-823
826-847
  5-
-
-
-
-
-
-
A:301-322
-
-
-
A:325-346
-
-
-
A:349-370
-
-
-
A:373-394
-
-
-
A:397-418
-
-
-
-
-
-
-
-
-
-
-
Biological Unit 2 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.SLIT2_HUMAN56-77
80-101
104-125
128-149
152-173
176-197
200-221
301-322
 
 
 
325-346
 
 
 
349-370
 
 
 
373-394
 
 
 
397-418
 
 
 
559-580
607-628
631-652
655-676
778-799
755-777
802-823
826-847
  5-
-
-
-
-
-
-
-
B:301-322
-
-
-
B:325-346
-
-
-
B:349-370
-
-
-
B:373-394
-
-
-
B:397-418
-
-
-
-
-
-
-
-
-
-
Biological Unit 3 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.SLIT2_HUMAN56-77
80-101
104-125
128-149
152-173
176-197
200-221
301-322
 
 
 
325-346
 
 
 
349-370
 
 
 
373-394
 
 
 
397-418
 
 
 
559-580
607-628
631-652
655-676
778-799
755-777
802-823
826-847
  5-
-
-
-
-
-
-
-
-
C:301-322
-
-
-
C:325-346
-
-
-
C:349-370
-
-
-
C:373-394
-
-
-
C:397-418
-
-
-
-
-
-
-
-
-
Biological Unit 4 (1, 5)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LRRPS51450 Leucine-rich repeat profile.SLIT2_HUMAN56-77
80-101
104-125
128-149
152-173
176-197
200-221
301-322
 
 
 
325-346
 
 
 
349-370
 
 
 
373-394
 
 
 
397-418
 
 
 
559-580
607-628
631-652
655-676
778-799
755-777
802-823
826-847
  5-
-
-
-
-
-
-
-
-
-
D:301-322
-
-
-
D:325-346
-
-
-
D:349-370
-
-
-
D:373-394
-
-
-
D:397-418
-
-
-
-
-
-
-
-

(-) Exons   (0, 0)

(no "Exon" information available for 2V9S)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:207
 aligned with SLIT2_HUMAN | O94813 from UniProtKB/Swiss-Prot  Length:1529

    Alignment length:207
                                   281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       
          SLIT2_HUMAN   272 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 478
               SCOP domains d2v9sa_ A: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee..................eee.......ee............eee.......ee............eee.....................eee.....................eee.....................eee.....ee....hhhhhhhhhhh........eee............hhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------LRR  PDB: A:301-322   --LRR  PDB: A:325-346   --LRR  PDB: A:349-370   --LRR  PDB: A:373-394   --LRR  PDB: A:397-418   ------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9s A 272 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINcLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 478
                                   281       291       301       311       321       331       341       351       361       371       381    |  391       401       411       421       431       441       451       461       471       
                                                                                                                                            386-CSD                                                                                        

Chain B from PDB  Type:PROTEIN  Length:207
 aligned with SLIT2_HUMAN | O94813 from UniProtKB/Swiss-Prot  Length:1529

    Alignment length:207
                                   281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       
          SLIT2_HUMAN   272 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 478
               SCOP domains d2v9sb_ B: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee..................eee.......ee............eee.......ee............eee.....................eee.....................eee.....................eee.....ee....hhhhhhhhhhh........eee........hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------LRR  PDB: B:301-322   --LRR  PDB: B:325-346   --LRR  PDB: B:349-370   --LRR  PDB: B:373-394   --LRR  PDB: B:397-418   ------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9s B 272 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINcLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 478
                                   281       291       301       311       321       331       341       351       361       371       381    |  391       401       411       421       431       441       451       461       471       
                                                                                                                                            386-CSD                                                                                        

Chain C from PDB  Type:PROTEIN  Length:207
 aligned with SLIT2_HUMAN | O94813 from UniProtKB/Swiss-Prot  Length:1529

    Alignment length:207
                                   281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       
          SLIT2_HUMAN   272 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 478
               SCOP domains d2v9sc_ C: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eee..eee..................eee.......ee............eee.......ee............eee.....................eee.........hhhhhh......eee.....................eee.....ee.hhhhhhhhhhhhhh........eeehhhhh...hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------LRR  PDB: C:301-322   --LRR  PDB: C:325-346   --LRR  PDB: C:349-370   --LRR  PDB: C:373-394   --LRR  PDB: C:397-418   ------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9s C 272 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINcLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 478
                                   281       291       301       311       321       331       341       351       361       371       381    |  391       401       411       421       431       441       451       461       471       
                                                                                                                                            386-CSD                                                                                        

Chain D from PDB  Type:PROTEIN  Length:207
 aligned with SLIT2_HUMAN | O94813 from UniProtKB/Swiss-Prot  Length:1529

    Alignment length:207
                                   281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       
          SLIT2_HUMAN   272 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 478
               SCOP domains d2v9sd_ D: automated matches                                                                                                                                                                                    SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) LRRNT-2v9sD13 D:272-299     ------------------------LRR_8-2v9sD01 D:324-384                                      ---------------------------------------------------------------------LRRCT-2v9sD09 D:454-478   Pfam domains (1)
           Pfam domains (2) LRRNT-2v9sD14 D:272-299     ------------------------LRR_8-2v9sD02 D:324-384                                      ---------------------------------------------------------------------LRRCT-2v9sD10 D:454-478   Pfam domains (2)
           Pfam domains (3) LRRNT-2v9sD15 D:272-299     ------------------------LRR_8-2v9sD03 D:324-384                                      ---------------------------------------------------------------------LRRCT-2v9sD11 D:454-478   Pfam domains (3)
           Pfam domains (4) LRRNT-2v9sD16 D:272-299     ------------------------LRR_8-2v9sD04 D:324-384                                      ---------------------------------------------------------------------LRRCT-2v9sD12 D:454-478   Pfam domains (4)
           Pfam domains (5) ----------------------------------------------------LRR_8-2v9sD05 D:324-384                                      ---------------------------------------------------------------------------------------------- Pfam domains (5)
           Pfam domains (6) ----------------------------------------------------LRR_8-2v9sD06 D:324-384                                      ---------------------------------------------------------------------------------------------- Pfam domains (6)
           Pfam domains (7) ----------------------------------------------------LRR_8-2v9sD07 D:324-384                                      ---------------------------------------------------------------------------------------------- Pfam domains (7)
           Pfam domains (8) ----------------------------------------------------LRR_8-2v9sD08 D:324-384                                      ---------------------------------------------------------------------------------------------- Pfam domains (8)
         Sec.struct. author ......eee..eee..................eee.......ee............eee.......ee............eee.....................eee.....................eee.....................eee.....ee.hhhhhhhhhhhhhh........eeehhhhh...hhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----------------------------LRR  PDB: D:301-322   --LRR  PDB: D:325-346   --LRR  PDB: D:349-370   --LRR  PDB: D:373-394   --LRR  PDB: D:397-418   ------------------------------------------------------------ PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v9s D 272 HCPAACTCSNNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINcLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHLKWLADYLHTNPIETSGARCTSPRRLANKRIGQIKSKKFRC 478
                                   281       291       301       311       321       331       341       351       361       371       381    |  391       401       411       421       431       441       451       461       471       
                                                                                                                                            386-CSD                                                                                        

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 4)

Asymmetric Unit

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2V9S)

(-) Pfam Domains  (3, 16)

Asymmetric Unit
(-)
Clan: LRR (77)
(-)
Family: LRR_8 (41)
1aLRR_8-2v9sD01D:324-384
1bLRR_8-2v9sD02D:324-384
1cLRR_8-2v9sD03D:324-384
1dLRR_8-2v9sD04D:324-384
1eLRR_8-2v9sD05D:324-384
1fLRR_8-2v9sD06D:324-384
1gLRR_8-2v9sD07D:324-384
1hLRR_8-2v9sD08D:324-384
2aLRRCT-2v9sD09D:454-478
2bLRRCT-2v9sD10D:454-478
2cLRRCT-2v9sD11D:454-478
2dLRRCT-2v9sD12D:454-478
(-)
Family: LRRNT (22)
3aLRRNT-2v9sD13D:272-299
3bLRRNT-2v9sD14D:272-299
3cLRRNT-2v9sD15D:272-299
3dLRRNT-2v9sD16D:272-299

(-) Gene Ontology  (63, 63)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D   (SLIT2_HUMAN | O94813)
molecular function
    GO:0005095    GTPase inhibitor activity    Stops, prevents or reduces the activity of any enzyme that catalyzes the hydrolysis of GTP to GDP and orthophosphate.
    GO:0048495    Roundabout binding    Interacting selectively and non-covalently with the Roundabout (ROBO) receptor, a transmembrane receptor.
    GO:0005509    calcium ion binding    Interacting selectively and non-covalently with calcium ions (Ca2+).
    GO:0043395    heparan sulfate proteoglycan binding    Interacting selectively and non-covalently with a heparan sulfate proteoglycan, any proteoglycan containing heparan sulfate as the glycosaminoglycan carbohydrate unit.
    GO:0008201    heparin binding    Interacting selectively and non-covalently with heparin, any member of a group of glycosaminoglycans found mainly as an intracellular component of mast cells and which consist predominantly of alternating alpha-(1->4)-linked D-galactose and N-acetyl-D-glucosamine-6-sulfate residues.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0043237    laminin-1 binding    Interacting selectively and non-covalently with laminin-1, a glycoprotein trimer with the subunit composition alpha1, beta1, gamma1.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
    GO:0043394    proteoglycan binding    Interacting selectively and non-covalently with a proteoglycan, any glycoprotein in which the carbohydrate units are glycosaminoglycans.
biological process
    GO:0035385    Roundabout signaling pathway    A series of molecular signals initiated by the binding of a SLIT protein to a Roundabout (ROBO) family receptor on the surface of a target cell, and ending with regulation of a downstream cellular process, e.g. transcription.
    GO:0061364    apoptotic process involved in luteolysis    The apoptotic process that contributes to luteolysis.
    GO:0048846    axon extension involved in axon guidance    The long distance growth of a single cell process, that is involved in the migration of an axon growth cone, where the migration is directed to a specific target site by a combination of attractive and repulsive cues.
    GO:0007411    axon guidance    The chemotaxis process that directs the migration of an axon growth cone to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0007420    brain development    The process whose specific outcome is the progression of the brain over time, from its formation to the mature structure. Brain development begins with patterning events in the neural tube and ends with the mature structure that is the center of thought and emotion. The brain is responsible for the coordination and control of bodily activities and the interpretation of information from the senses (sight, hearing, smell, etc.).
    GO:0048754    branching morphogenesis of an epithelial tube    The process in which the anatomical structures of branches in an epithelial tube are generated and organized. A tube is a long hollow cylinder.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0002042    cell migration involved in sprouting angiogenesis    The orderly movement of endothelial cells into the extracellular matrix in order to form new blood vessels involved in sprouting angiogenesis.
    GO:0071504    cellular response to heparin    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a heparin stimulus.
    GO:0032870    cellular response to hormone stimulus    Any process that results in a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a hormone stimulus.
    GO:0021834    chemorepulsion involved in embryonic olfactory bulb interneuron precursor migration    The creation and reception of signals that guide olfactory bulb interneuron precursors down concentration gradients towards the olfactory bulb.
    GO:0021836    chemorepulsion involved in postnatal olfactory bulb interneuron migration    The creation and reception of signals that repel olfactory bulb interneurons from the subventricular zone as a component process in tangential migration.
    GO:0006935    chemotaxis    The directed movement of a motile cell or organism, or the directed growth of a cell guided by a specific chemical concentration gradient. Movement may be towards a higher concentration (positive chemotaxis) or towards a lower concentration (negative chemotaxis).
    GO:0021972    corticospinal neuron axon guidance through spinal cord    The process in which the migration of an axon growth cone of a pyramidal cell that is part of the corticospinal tract is directed after decussation through the spinal cord in response to a combination of attractive and repulsive cues.
    GO:0050929    induction of negative chemotaxis    Any process that initiates the directed movement of a motile cell or organism towards a lower concentration in a concentration gradient of a specific chemical.
    GO:0008045    motor neuron axon guidance    The process in which the migration of an axon growth cone of a motor neuron is directed to a specific target site in response to a combination of attractive and repulsive cues.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0050919    negative chemotaxis    The directed movement of a motile cell or organism towards a lower concentration of a chemical.
    GO:0034260    negative regulation of GTPase activity    Any process that stops or reduces the rate of GTP hydrolysis by a GTPase.
    GO:0030837    negative regulation of actin filament polymerization    Any process that stops, prevents, or reduces the frequency, rate or extent of actin polymerization.
    GO:0030308    negative regulation of cell growth    Any process that stops, prevents, or reduces the frequency, rate, extent or direction of cell growth.
    GO:0030336    negative regulation of cell migration    Any process that stops, prevents, or reduces the frequency, rate or extent of cell migration.
    GO:0090288    negative regulation of cellular response to growth factor stimulus    Any process that decreases the rate, frequency, or extent of a change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a growth factor stimulus.
    GO:0070100    negative regulation of chemokine-mediated signaling pathway    Any process that decreases the rate, frequency or extent of the series of molecular events generated as a consequence of a chemokine binding to a cell surface receptor.
    GO:0010596    negative regulation of endothelial cell migration    Any process that decreases the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.
    GO:0050728    negative regulation of inflammatory response    Any process that stops, prevents, or reduces the frequency, rate or extent of the inflammatory response.
    GO:0010593    negative regulation of lamellipodium assembly    Any process that decreases the rate, frequency or extent of the formation of a lamellipodium, a thin sheetlike extension of the surface of a migrating cell.
    GO:0002689    negative regulation of leukocyte chemotaxis    Any process that stops, prevents, or reduces the frequency, rate, or extent of leukocyte chemotaxis.
    GO:0090027    negative regulation of monocyte chemotaxis    Any process that decreases the frequency, rate, or extent of monocyte chemotaxis.
    GO:0071676    negative regulation of mononuclear cell migration    Any process that decreases the rate, frequency or extent of mononuclear cell migration. Mononuclear cell migration is the movement of a mononuclear cell within or between different tissues and organs of the body.
    GO:0090024    negative regulation of neutrophil chemotaxis    Any process that decreases the frequency, rate, or extent of neutrophil chemotaxis. Neutrophil chemotaxis is the directed movement of a neutrophil cell, the most numerous polymorphonuclear leukocyte found in the blood, in response to an external stimulus, usually an infection or wounding.
    GO:0001933    negative regulation of protein phosphorylation    Any process that stops, prevents or reduces the rate of addition of phosphate groups to amino acids within a protein.
    GO:0090260    negative regulation of retinal ganglion cell axon guidance    Any process that decreases the frequency, rate, or extent of retinal ganglion cell axon guidance, the process in which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues.
    GO:0051058    negative regulation of small GTPase mediated signal transduction    Any process that stops, prevents, or reduces the frequency, rate or extent of small GTPase mediated signal transduction.
    GO:0071672    negative regulation of smooth muscle cell chemotaxis    Any process that stops, prevents, or reduces the frequency, rate, or extent of smooth muscle cell chemotaxis.
    GO:0014912    negative regulation of smooth muscle cell migration    Any process that stops, prevents, or reduces the frequency, rate or extent of smooth muscle cell migration.
    GO:0043116    negative regulation of vascular permeability    Any process that reduces the extent to which blood vessels can be pervaded by fluid.
    GO:0007399    nervous system development    The process whose specific outcome is the progression of nervous tissue over time, from its formation to its mature state.
    GO:0043065    positive regulation of apoptotic process    Any process that activates or increases the frequency, rate or extent of cell death by apoptotic process.
    GO:0050772    positive regulation of axonogenesis    Any process that activates or increases the frequency, rate or extent of axonogenesis.
    GO:0051414    response to cortisol    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cortisol stimulus. Cortisol is the major natural glucocorticoid synthesized in the zona fasciculata of the adrenal cortex; it affects the metabolism of glucose, protein, and fats and has appreciable mineralocorticoid activity. It also regulates the immune system and affects many other functions.
    GO:0031667    response to nutrient levels    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of nutrients.
    GO:0031290    retinal ganglion cell axon guidance    The process in which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues.
    GO:0021510    spinal cord development    The process whose specific outcome is the progression of the spinal cord over time, from its formation to the mature structure. The spinal cord primarily conducts sensory and motor nerve impulses between the brain and the peripheral nervous tissues.
    GO:0001657    ureteric bud development    The process whose specific outcome is the progression of the ureteric bud over time, from its formation to the mature structure.
cellular component
    GO:0009986    cell surface    The external part of the cell wall and/or plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0070062    extracellular exosome    A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.
    GO:0005615    extracellular space    That part of a multicellular organism outside the cells proper, usually taken to be outside the plasma membranes, and occupied by fluid.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.
    GO:0005578    proteinaceous extracellular matrix    A layer consisting mainly of proteins (especially collagen) and glycosaminoglycans (mostly as proteoglycans) that forms a sheet underlying or overlying cells such as endothelial and epithelial cells. The proteins are secreted by cells in the vicinity. An example of this component is found in Mus musculus.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        SLIT2_HUMAN | O948132v70 2v9t 2wfh

(-) Related Entries Specified in the PDB File

2v70 THIRD LRR DOMAIN OF HUMAN SLIT2
2v9t COMPLEX BETWEEN THE SECOND LRR DOMAIN OF SLIT2 AND THE FIRST IG DOMAIN FROM ROBO1