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2V9S
Asym. Unit
Info
Asym.Unit (152 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (39 KB)
Biol.Unit 3 (40 KB)
Biol.Unit 4 (40 KB)
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(1)
Title
:
SECOND LRR DOMAIN OF HUMAN SLIT2
Authors
:
C. Morlot, S. Cusack, A. A. Mccarthy
Date
:
25 Aug 07 (Deposition) - 25 Sep 07 (Release) - 05 Nov 14 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Biol. Unit 3: C (1x)
Biol. Unit 4: D (1x)
Keywords
:
Developmental Protein, Structural Protein, Neurogenesis, Differentiation, Egf-Like Domain
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. Morlot, N. M. Thielens, R. B. Ravelli, W. Hemrika, R. A. Romijn, P. Gros, S. Cusack, A. A. Mccarthy
Structural Insights Into The Slit-Robo Complex.
Proc. Nat. Acad. Sci. Usa V. 104 14923 2007
(for further references see the
PDB file header
)
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Hetero Components
(3, 6)
Info
All Hetero Components
1a: 3-SULFINOALANINE (CSDa)
1b: 3-SULFINOALANINE (CSDb)
1c: 3-SULFINOALANINE (CSDc)
1d: 3-SULFINOALANINE (CSDd)
2a: GLYCEROL (GOLa)
3a: DI(HYDROXYETHYL)ETHER (PEGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CSD
4
Mod. Amino Acid
3-SULFINOALANINE
2
GOL
1
Ligand/Ion
GLYCEROL
3
PEG
1
Ligand/Ion
DI(HYDROXYETHYL)ETHER
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG D:328 , SER D:352 , VAL D:354 , TYR D:356 , LEU D:376
BINDING SITE FOR RESIDUE PEG D1479
2
AC2
SOFTWARE
LYS B:365 , SER B:366 , GLU B:369 , ASP B:390 , GLN B:393
BINDING SITE FOR RESIDUE GOL B1479
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 20)
Info
All PROSITE Patterns/Profiles
1: LRR (-|-|-|-|-|-|-|A:301-322,B:301-322,...)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
LRR
PS51450
Leucine-rich repeat profile.
SLIT2_HUMAN
56-77
80-101
104-125
128-149
152-173
176-197
200-221
301-322
325-346
349-370
373-394
397-418
559-580
607-628
631-652
655-676
778-799
755-777
802-823
826-847
20
-
-
-
-
-
-
-
A:301-322
B:301-322
C:301-322
D:301-322
A:325-346
B:325-346
C:325-346
D:325-346
A:349-370
B:349-370
C:349-370
D:349-370
A:373-394
B:373-394
C:373-394
D:373-394
A:397-418
B:397-418
C:397-418
D:397-418
-
-
-
-
-
-
-
-
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 4)
Info
All SCOP Domains
1a: SCOP_d2v9sa_ (A:)
1b: SCOP_d2v9sd_ (D:)
1c: SCOP_d2v9sb_ (B:)
1d: SCOP_d2v9sc_ (C:)
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Classes
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)
(
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(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
(112)
Superfamily
:
L domain-like
(93)
Family
:
automated matches
(23)
Protein domain
:
automated matches
(23)
Human (Homo sapiens) [TaxId: 9606]
(11)
1a
d2v9sa_
A:
1b
d2v9sd_
D:
1c
d2v9sb_
B:
1d
d2v9sc_
C:
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(3, 16)
Info
all PFAM domains
1a: PFAM_LRR_8_2v9sD01 (D:324-384)
1b: PFAM_LRR_8_2v9sD02 (D:324-384)
1c: PFAM_LRR_8_2v9sD03 (D:324-384)
1d: PFAM_LRR_8_2v9sD04 (D:324-384)
1e: PFAM_LRR_8_2v9sD05 (D:324-384)
1f: PFAM_LRR_8_2v9sD06 (D:324-384)
1g: PFAM_LRR_8_2v9sD07 (D:324-384)
1h: PFAM_LRR_8_2v9sD08 (D:324-384)
2a: PFAM_LRRCT_2v9sD09 (D:454-478)
2b: PFAM_LRRCT_2v9sD10 (D:454-478)
2c: PFAM_LRRCT_2v9sD11 (D:454-478)
2d: PFAM_LRRCT_2v9sD12 (D:454-478)
3a: PFAM_LRRNT_2v9sD13 (D:272-299)
3b: PFAM_LRRNT_2v9sD14 (D:272-299)
3c: PFAM_LRRNT_2v9sD15 (D:272-299)
3d: PFAM_LRRNT_2v9sD16 (D:272-299)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
LRR
(77)
Family
:
LRR_8
(41)
Homo sapiens (Human)
(24)
1a
LRR_8-2v9sD01
D:324-384
1b
LRR_8-2v9sD02
D:324-384
1c
LRR_8-2v9sD03
D:324-384
1d
LRR_8-2v9sD04
D:324-384
1e
LRR_8-2v9sD05
D:324-384
1f
LRR_8-2v9sD06
D:324-384
1g
LRR_8-2v9sD07
D:324-384
1h
LRR_8-2v9sD08
D:324-384
Clan
:
no clan defined [family: LRRCT]
(5)
Family
:
LRRCT
(5)
Homo sapiens (Human)
(4)
2a
LRRCT-2v9sD09
D:454-478
2b
LRRCT-2v9sD10
D:454-478
2c
LRRCT-2v9sD11
D:454-478
2d
LRRCT-2v9sD12
D:454-478
Clan
:
no clan defined [family: LRRNT]
(22)
Family
:
LRRNT
(22)
Homo sapiens (Human)
(15)
3a
LRRNT-2v9sD13
D:272-299
3b
LRRNT-2v9sD14
D:272-299
3c
LRRNT-2v9sD15
D:272-299
3d
LRRNT-2v9sD16
D:272-299
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Show PDB file:
Asym.Unit (152 KB)
Header - Asym.Unit
Biol.Unit 1 (38 KB)
Header - Biol.Unit 1
Biol.Unit 2 (39 KB)
Header - Biol.Unit 2
Biol.Unit 3 (40 KB)
Header - Biol.Unit 3
Biol.Unit 4 (40 KB)
Header - Biol.Unit 4
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