2V5Y - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE RECEPTOR PROTEIN TYROSINE PHOSPHATASE MU ECTODOMAIN

Authors :   A. R. Aricescu, C. Siebold, K. Choudhuri, V. T. Chang, W. Lu, S. J. Davis, P. A. Van Der Merwe, E. Y. Jones

Date :   11 Jul 07 (Deposition) - 11 Sep 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.10

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)

Keywords :   Membrane, Receptor, Hydrolase, Glycoprotein, Receptor Protein Tyrosine Phosphatase, Cell Adhesion, Transmembrane, Protein Phosphatase, Extracellular Region, Immunoglobulin Domain (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. R. Aricescu, C. Siebold, K. Choudhuri, V. T. Chang, W. Lu, S. J. Davis P. A. Van Der Merwe, E. Y. Jones
Structure Of A Tyrosine Phosphatase Adhesive Interaction Reveals A Spacer-Clamp Mechanism.
Science V. 317 1217 2007
PubMed-ID: 17761881 | Reference-DOI: 10.1126/SCIENCE.1144646

Molecule 1 - RECEPTOR-TYPE TYROSINE-PROTEIN PHOSPHATASE MU
	Chains	:	A
	EC Number	:	3.1.3.48
	Engineered	:	YES
	Expression System	:	HOMO SAPIENS
	Expression System Cell Line	:	HEK-293S GNTI-
	Expression System Plasmid	:	PHLSEC
	Expression System Taxid	:	9606
	Expression System Vector Type	:	EPISOMAL PLASMID
	Fragment	:	EXTRACELLULAR REGION, RESIDUES 21-742
	Organ	:	LUNG
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	PROTEIN-TYROSINE PHOSPHATASE MU, R-PTP-MU

		1
Asymmetric Unit	:	A
Biological Unit 1 (2x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 9)

No.	Name	Count	Type	Full Name
1	NA	2	Ligand/Ion	SODIUM ION
2	NAG	7	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Biological Unit 1 (1, 14)

No.	Name	Count	Type	Full Name
1	NA	-1	Ligand/Ion	SODIUM ION
2	NAG	14	Ligand/Ion	N-ACETYL-D-GLUCOSAMINE

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLU A:22 , ASN A:386	BINDING SITE FOR RESIDUE NAG A1569
2	AC2	SOFTWARE	LYS A:70 , ASN A:72 , TRP A:131	BINDING SITE FOR RESIDUE NAG A1570
3	AC3	SOFTWARE	ASN A:111 , ILE A:112 , SER A:113 , ARG A:243	BINDING SITE FOR RESIDUE NAG A1571
4	AC4	SOFTWARE	GLU A:29 , MET A:43 , ASN A:52 , SER A:54 , TYR A:149	BINDING SITE FOR RESIDUE NAG A1572
5	AC5	SOFTWARE	TYR A:432 , ASN A:434 , GLN A:456	BINDING SITE FOR RESIDUE NAG A1573
6	AC6	SOFTWARE	SER A:392 , TYR A:393 , ASN A:394 , ASN A:443 , PRO A:444	BINDING SITE FOR RESIDUE NAG A1574
7	AC7	SOFTWARE	ASN A:285 , SER A:286 , LEU A:522 , ASN A:524 , GLU A:525	BINDING SITE FOR RESIDUE NAG A1575
8	AC8	SOFTWARE	SER A:21 , ASP A:24 , PHE A:26 , ASN A:27	BINDING SITE FOR RESIDUE NA A1576
9	AC9	SOFTWARE	LEU A:8 , SER A:47 , ASP A:153	BINDING SITE FOR RESIDUE NA A1577

Asymmetric Unit

No.	Residues
1	A:7	-	A:16
2	A:76	-	A:162
3	A:186	-	A:240
4	A:356	-	A:390

Asymmetric Unit

No.	Residues
1	Ser A:85	-	Lys A:86
2	Ser A:113	-	Gly A:114
3	Trp A:131	-	Pro A:132
4	Val A:403	-	Gly A:404
5	Asp A:511	-	Leu A:512
6	Ser A:567	-	Met A:568

Asymmetric Unit (1, 1)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_046634	S	39	R	PTPRM_HUMAN	Polymorphism	35224276	A	S	19	R

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (1, 2)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_046634	S	39	R	PTPRM_HUMAN	Polymorphism	35224276	A	S	19	R

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Asymmetric Unit (3, 5)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MAM_2	PS50060	MAM domain profile.	PTPRM_HUMAN	25-184	1	A:5-164
2	MAM_1	PS00740	MAM domain signature.	PTPRM_HUMAN	66-105	1	A:46-85
3	FN3	PS50853	Fibronectin type-III domain profile.	PTPRM_HUMAN	284-379 382-480 482-587	3	A:264-359 A:362-460 A:462-567

Biological Unit 1 (3, 10)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	MAM_2	PS50060	MAM domain profile.	PTPRM_HUMAN	25-184	2	A:5-164
2	MAM_1	PS00740	MAM domain signature.	PTPRM_HUMAN	66-105	2	A:46-85
3	FN3	PS50853	Fibronectin type-III domain profile.	PTPRM_HUMAN	284-379 382-480 482-587	6	A:264-359 A:362-460 A:462-567

Asymmetric Unit (11, 11)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000332175	1	ENSE00001308921	chr18:7567817-7567889	73	PTPRM_HUMAN	1-25	25	1	A:2-5	4
1.3	ENST00000332175	3	ENSE00001688331	chr18:7774147-7774269	123	PTPRM_HUMAN	25-66	42	1	A:5-46	42
1.4	ENST00000332175	4	ENSE00001747026	chr18:7888104-7888375	272	PTPRM_HUMAN	66-156	91	1	A:46-136	91
1.5	ENST00000332175	5	ENSE00001782251	chr18:7906503-7906581	79	PTPRM_HUMAN	157-183	27	1	A:137-163	27
1.6	ENST00000332175	6	ENSE00001612827	chr18:7926566-7926681	116	PTPRM_HUMAN	183-221	39	1	A:163-201	39
1.8	ENST00000332175	8	ENSE00001732355	chr18:7949179-7949353	175	PTPRM_HUMAN	222-280	59	1	A:202-260	59
1.9	ENST00000332175	9	ENSE00001651616	chr18:7955119-7955412	294	PTPRM_HUMAN	280-378	99	1	A:260-358	99
1.10	ENST00000332175	10	ENSE00001638021	chr18:8069684-8069992	309	PTPRM_HUMAN	378-481	104	1	A:358-461	104
1.11	ENST00000332175	11	ENSE00001650489	chr18:8076453-8076562	110	PTPRM_HUMAN	481-517	37	1	A:461-497	37
1.12	ENST00000332175	12	ENSE00001728904	chr18:8085669-8085870	202	PTPRM_HUMAN	518-585	68	1	A:498-565 (gaps)	68
1.13	ENST00000332175	13	ENSE00001800642	chr18:8088747-8088849	103	PTPRM_HUMAN	585-619	35	1	A:565-568	4
1.14	ENST00000332175	14	ENSE00001777562	chr18:8113484-8113757	274	PTPRM_HUMAN	619-710	92	0	-	-
1.15	ENST00000332175	15	ENSE00001725303	chr18:8114789-8114825	37	PTPRM_HUMAN	711-723	13	0	-	-
1.16	ENST00000332175	16	ENSE00001751923	chr18:8143645-8143777	133	PTPRM_HUMAN	723-767	45	0	-	-
1.17	ENST00000332175	17	ENSE00001788248	chr18:8244056-8244207	152	PTPRM_HUMAN	767-818	52	0	-	-
1.18	ENST00000332175	18	ENSE00001690528	chr18:8247843-8247917	75	PTPRM_HUMAN	818-843	26	0	-	-
1.21	ENST00000332175	21	ENSE00001735424	chr18:8253225-8253412	188	PTPRM_HUMAN	843-905	63	0	-	-
1.22	ENST00000332175	22	ENSE00001785900	chr18:8296366-8296453	88	PTPRM_HUMAN	906-935	30	0	-	-
1.23	ENST00000332175	23	ENSE00001611771	chr18:8314779-8314855	77	PTPRM_HUMAN	935-960	26	0	-	-
1.24	ENST00000332175	24	ENSE00001645096	chr18:8319176-8319212	37	PTPRM_HUMAN	961-973	13	0	-	-
1.25	ENST00000332175	25	ENSE00001602094	chr18:8343421-8343518	98	PTPRM_HUMAN	973-1005	33	0	-	-
1.26	ENST00000332175	26	ENSE00001610861	chr18:8370888-8371004	117	PTPRM_HUMAN	1006-1044	39	0	-	-
1.27	ENST00000332175	27	ENSE00001783729	chr18:8376044-8376198	155	PTPRM_HUMAN	1045-1096	52	0	-	-
1.28	ENST00000332175	28	ENSE00001732392	chr18:8376460-8376595	136	PTPRM_HUMAN	1096-1141	46	0	-	-
1.29	ENST00000332175	29	ENSE00001797057	chr18:8378263-8378412	150	PTPRM_HUMAN	1142-1191	50	0	-	-
1.30	ENST00000332175	30	ENSE00001188168	chr18:8379165-8379338	174	PTPRM_HUMAN	1192-1249	58	0	-	-
1.31	ENST00000332175	31	ENSE00001143060	chr18:8380294-8380425	132	PTPRM_HUMAN	1250-1293	44	0	-	-
1.32	ENST00000332175	32	ENSE00001143052	chr18:8384559-8384684	126	PTPRM_HUMAN	1294-1335	42	0	-	-
1.33	ENST00000332175	33	ENSE00001143044	chr18:8387070-8387233	164	PTPRM_HUMAN	1336-1390	55	0	-	-
1.34	ENST00000332175	34	ENSE00001148347	chr18:8394474-8394609	136	PTPRM_HUMAN	1390-1435	46	0	-	-
1.35b	ENST00000332175	35b	ENSE00001541394	chr18:8406107-8406859	753	PTPRM_HUMAN	1436-1452	17	0	-	-

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:564
 aligned with PTPRM_HUMAN | P28827 from UniProtKB/Swiss-Prot  Length:1452

    Alignment length:567
                                    31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       
          PTPRM_HUMAN    22 TFSGGCLFDEPYSTCGYSQSEGDDFNWEQVNTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFDPEIDLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSM 588
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -----MAM-2v5yA03 A:7-164                                                                                                                                           --------------ig-2v5yA04 A:179-242                                            --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------fn3-2v5yA01 A:467-555                                                                    ------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------fn3-2v5yA02 A:467-555                                                                    ------------- Pfam domains (2)
         Sec.struct. author ..........hhhhhh.ee........eee................eeee.........eeeeeeeee......eeeeeeee..........eeeeeee.........eee........eeeee.........eeeeeeee.......eee...eee........ee.....eeee....eeeeeeee.......eeeee......eeeeeeee.....eeeeeee...........eeeee............eeee.........eeee....eeeee.............eeeeeeee.....eeeee....eeeeee.....eeeeeeeee.............eeee..........eeeeeeee....eeeeee..hhhhhh....eeeeeeeee....eeeeeeee........eeee.......eeeeeeeee..........eeee..............eeeee..eeeee............eeeeeeeeee...---........eee.....eeee.......eeeeeeeee.......eeeeeee........ Sec.struct. author
                 SAPs(SNPs) -----------------R--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) ---MAM_2  PDB: A:5-164 UniProt: 25-184                                                                                                                             ---------------------------------------------------------------------------------------------------FN3  PDB: A:264-359 UniProt: 284-379                                                            --FN3  PDB: A:362-460 UniProt: 382-480                                                               -FN3  PDB: A:462-567 UniProt: 482-587                                                                      - PROSITE (1)
                PROSITE (2) --------------------------------------------MAM_1  PDB: A:46-85 UniProt: 66-105     --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
           Transcript 1 (1) 1.1 ----------------------------------------Exon 1.4  PDB: A:46-136 UniProt: 66-156                                                    Exon 1.5  PDB: A:137-163   --------------------------------------Exon 1.8  PDB: A:202-260 UniProt: 222-280                  -------------------------------------------------------------------------------------------------Exon 1.10  PDB: A:358-461 UniProt: 378-481                                                              ------------------------------------Exon 1.12  PDB: A:498-565 (gaps) UniProt: 518-585                   --- Transcript 1 (1)
           Transcript 1 (2) ---Exon 1.3  PDB: A:5-46 UniProt: 25-66      --------------------------------------------------------------------------------------------------------------------Exon 1.6  PDB: A:163-201               ----------------------------------------------------------Exon 1.9  PDB: A:260-358 UniProt: 280-378                                                          ------------------------------------------------------------------------------------------------------Exon 1.11  PDB: A:461-497            -------------------------------------------------------------------1.13 Transcript 1 (2)
                 2v5y A   2 TFSGGCLFDEPYSTCGYSQSEGDDFNWEQVNTLTKPTSDPWMPSGSFMLVNASGRPEGQRAHLLLPQLKENDTHCIDFHYFVSSKSNSPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSINGDGPIVAREVEYCTASGSWNDRQPVDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPGPALRTRTKCADPMRGPRKLEVVEVKSRQITIRWEPFGYNVTRCHSYNLTVHYCYQVGGQEQVREEVSWDTENSHPQHTITNLSPYTNVSVKLILMNPEGRKESQELIVQTDEDLPGAVPTESIQGSTFEEKIFLQWREPTQTYGVITLYEITYKAVSSFD---DLSNQSGRVSKLGNETHFLFFGLYPGTTYSFTIRASTAKGFGPPATNQFTTKISAPSM 568
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501     | 511       521       531       541       551       561       
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   507 511

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2V5Y)

(no "CATH Domain" information available for 2V5Y)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: E-set (290)

Family: fn3 (66)

Homo sapiens (Human) (52)

1a	fn3-2v5yA01	A:467-555
1b	fn3-2v5yA02	A:467-555

Clan: GBD (153)

Family: MAM (1)

Homo sapiens (Human) (1)

MAM-2v5yA03

A:7-164

Clan: Ig (577)

Family: ig (14)

Homo sapiens (Human) (11)

ig-2v5yA04

A:179-242

Asymmetric Unit(hide GO term definitions)

Chain A (PTPRM_HUMAN | P28827)

molecular function
	GO:0045296	cadherin binding	Interacting selectively and non-covalently with cadherin, a type I membrane protein involved in cell adhesion.
	GO:0016787	hydrolase activity	Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0016791	phosphatase activity	Catalysis of the hydrolysis of phosphoric monoesters, releasing inorganic phosphate.
	GO:0004721	phosphoprotein phosphatase activity	Catalysis of the reaction: a phosphoprotein + H2O = a protein + phosphate. Together with protein kinases, these enzymes control the state of phosphorylation of cell proteins and thereby provide an important mechanism for regulating cellular activity.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0004725	protein tyrosine phosphatase activity	Catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
	GO:0005001	transmembrane receptor protein tyrosine phosphatase activity	Combining with a signal and transmitting the signal from one side of the membrane to the other to initiate a change in cell activity by catalysis of the reaction: protein tyrosine phosphate + H2O = protein tyrosine + phosphate.
biological process
	GO:0007155	cell adhesion	The attachment of a cell, either to another cell or to an underlying substrate such as the extracellular matrix, via cell adhesion molecules.
	GO:0016311	dephosphorylation	The process of removing one or more phosphoric (ester or anhydride) residues from a molecule.
	GO:0007156	homophilic cell adhesion via plasma membrane adhesion molecules	The attachment of a plasma membrane adhesion molecule in one cell to an identical molecule in an adjacent cell.
	GO:0016525	negative regulation of angiogenesis	Any process that stops, prevents, or reduces the frequency, rate or extent of angiogenesis.
	GO:0010596	negative regulation of endothelial cell migration	Any process that decreases the rate, frequency, or extent of the orderly movement of an endothelial cell into the extracellular matrix to form an endothelium.
	GO:0001937	negative regulation of endothelial cell proliferation	Any process that stops, prevents, or reduces the rate or extent of endothelial cell proliferation.
	GO:0031175	neuron projection development	The process whose specific outcome is the progression of a neuron projection over time, from its formation to the mature structure. A neuron projection is any process extending from a neural cell, such as axons or dendrites (collectively called neurites).
	GO:0035335	peptidyl-tyrosine dephosphorylation	The removal of phosphoric residues from peptidyl-O-phospho-tyrosine to form peptidyl-tyrosine.
	GO:0006470	protein dephosphorylation	The process of removing one or more phosphoric residues from a protein.
	GO:0042493	response to drug	Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a drug stimulus. A drug is a substance used in the diagnosis, treatment or prevention of a disease.
	GO:0010842	retina layer formation	The process in which the vertebrate retina is organized into three laminae: the outer nuclear layer (ONL), which contains photoreceptor nuclei; the inner nuclear layer (INL), which contains amacrine, bipolar and horizontal cells; and the retinal ganglion cell (RGC) layer. Between the inner and outer nuclear layers, the outer plexiform layer (OPL) contains connections between the photoreceptors and bipolar and horizontal cells. The inner plexiform layer (IPL) is positioned between the INL and the ganglion cell layer and contains the dendrites of RGCs and processes of bipolar and amacrine cells. Spanning all layers of the retina are the radially oriented Mueller glia.
	GO:0031290	retinal ganglion cell axon guidance	The process in which the migration of an axon growth cone of a retinal ganglion cell (RGC) is directed to its target in the brain in response to a combination of attractive and repulsive cues.
	GO:0007165	signal transduction	The cellular process in which a signal is conveyed to trigger a change in the activity or state of a cell. Signal transduction begins with reception of a signal (e.g. a ligand binding to a receptor or receptor activation by a stimulus such as light), or for signal transduction in the absence of ligand, signal-withdrawal or the activity of a constitutively active receptor. Signal transduction ends with regulation of a downstream cellular process, e.g. regulation of transcription or regulation of a metabolic process. Signal transduction covers signaling from receptors located on the surface of the cell and signaling via molecules located within the cell. For signaling between cells, signal transduction is restricted to events at and within the receiving cell.
cellular component
	GO:0005913	cell-cell adherens junction	An adherens junction which connects a cell to another cell.
	GO:0005911	cell-cell junction	A cell junction that forms a connection between two or more cells in a multicellular organism; excludes direct cytoplasmic junctions such as ring canals.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0016021	integral component of membrane	The component of a membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0005887	integral component of plasma membrane	The component of the plasma membrane consisting of the gene products and protein complexes having at least some part of their peptide sequence embedded in the hydrophobic region of the membrane.
	GO:0030027	lamellipodium	A thin sheetlike process extended by the leading edge of a migrating cell or extending cell process; contains a dense meshwork of actin filaments.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0048471	perinuclear region of cytoplasm	Cytoplasm situated near, or occurring around, the nucleus.

Asymmetric Unit
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	Cis Peptide Bonds
		Asp A:511 - Leu A:512	[ RasMol ]
		Ser A:113 - Gly A:114	[ RasMol ]
		Ser A:567 - Met A:568	[ RasMol ]
		Ser A:85 - Lys A:86	[ RasMol ]
		Trp A:131 - Pro A:132	[ RasMol ]
		Val A:403 - Gly A:404	[ RasMol ]

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Access by PDB/NDB ID
	2v5y
		Family and Domain Information	:	ProDom \| SYSTERS
		General Structural Information	:	GlycoscienceDB \| MMDB \| NDB \| OCA \| PDB \| PDBe \| PDBj \| PDBsum \| PDBWiki \| PQS \| PROTEOPEDIA
		Orientation in Membranes	:	OPM
		Protein Surface	:	SURFACE
		Secondary Structure	:	DSSP (structure derived) \| HSSP (homology derived)
		Structural Genomics	:	GeneCensus
		Structural Neighbours	:	CE \| VAST
		Structure Classification	:	CATH \| Dali \| SCOP
		Validation and Original Data	:	BMRB Data View \| BMRB Restraints Grid \| EDS \| PROCHECK \| RECOORD \| WHAT_CHECK

Access by UniProt ID/Accession number
	PTPRM_HUMAN \| P28827
		Comparative Protein Structure Models	:	ModBase
		Genomic Information	:	Ensembl
		Protein-protein Interaction	:	DIP
		Sequence, Family and Domain Information	:	InterPro \| Pfam \| SMART \| UniProtKB/SwissProt

Access by Enzyme Classificator (EC Number)
	3.1.3.48
		General Enzyme Information	:	BRENDA \| EC-PDB \| Enzyme \| IntEnz
		Pathway	:	KEGG \| MetaCyc

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	(no 'MIM ID' available)
		Disease Information	:	OMIM

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		Age Related Information	:	GenAge

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		Domain Information	:	XDom
		Interatomic Contacts of Structural Units	:	CSU
		Ligand-protein Contacts	:	LPC
		Protein Cavities	:	castP
		Sequence and Secondary Structure	:	PDBCartoon
		Structure Alignment	:	STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
		Structure and Sequence Browser	:	STING

Access by UniProt ID/Accession number
	PTPRM_HUMAN \| P28827
		Protein Disorder Prediction	:	DisEMBL \| FoldIndex \| GLOBPLOT (for more information see DisProt)

UniProtKB/Swiss-Prot
	PTPRM_HUMAN \| P28827	:	1rpm 2c9a

1rpm	HUMAN RECEPTOR PROTEIN TYROSINE PHOSPHATASE MU , DOMAIN 1
2c9a	CRYSTAL STRUCTURE OF THE MAM-IG MODULE OF RECEPTOR PROTEIN TYROSINE PHOSPHATASE MU

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 9)

Sites (9, 9)

SS Bonds (4, 4)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (1, 1)

PROSITE Motifs (3, 5)

Exons (11, 11)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (3, 4)

Gene Ontology (29, 29)

Visualization

Interactive Views

Still Images

Databases and Analysis Tools

Databases

Analysis Tools

Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File