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(-) Description

Title :  CONTROLLING THE STORAGE OF NITROGEN AS ARGININE: THE COMPLEX OF PII AND ACETYLGLUTAMATE KINASE FROM SYNECHOCOCCUS ELONGATUS PCC 7942
 
Authors :  J. L. Llacer, C. Marco-Marin, F. Gil-Ortiz, I. Fita, V. Rubio
Date :  04 Jul 07  (Deposition) - 16 Oct 07  (Release) - 10 Dec 14  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.75
Chains :  Asym./Biol. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Keywords :  Amino-Acid Biosynthesis, Transcription Regulation, Transferase, Cyanobacteria, Transcription, N-Acetyl-L-Glutamate Kinase, Pii Signal Protein, Nucleotide-Binding, Acetylglutamate, Phosphorylation, Amino Acid Kinase, Glnb, Kinase, Trimer, Hexamer, Atp-Binding, Arginine Inhibition, Arginine Biosynthesis (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. L. Llacer, A. Contreras, K. Forchhammer, C. Marco-Marin, F. Gil-Ortiz, R. Maldonado, I. Fita, V. Rubio
The Crystal Structure Of The Complex Of Pii And Acetylglutamate Kinase Reveals How Pii Controls The Storage Of Nitrogen As Arginine.
Proc. Natl. Acad. Sci. Usa V. 104 17644 2007
PubMed-ID: 17959776  |  Reference-DOI: 10.1073/PNAS.0705987104

(-) Compounds

Molecule 1 - ACETYLGLUTAMATE KINASE
    Chains: A, B, C, D, E, F
    EC Number: 2.7.2.8
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-15B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: SYNECHOCOCCUS ELONGATUS
    Organism Taxid: 1140
    Strain: PCC 7942
    Synonym: NAG KINASE, AGK, N-ACETYL-L-GLUTAMATE 5-PHOSPHOTRANSFERASE
 
Molecule 2 - NITROGEN REGULATORY PROTEIN P-II
    Chains: G, H, I, J, K, L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET-22B
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Organism Scientific: SYNECHOCOCCUS ELONGATUS
    Organism Taxid: 1140
    Strain: PCC 7942
    Synonym: PII PROTEIN, PII SIGNAL TRANSDUCING PROTEIN

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric/Biological Unit : ABCDEFGHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 19)

Asymmetric/Biological Unit (4, 19)
No.NameCountTypeFull Name
1CL6Ligand/IonCHLORIDE ION
2GOL1Ligand/IonGLYCEROL
3NA6Ligand/IonSODIUM ION
4NLG6Ligand/IonN-ACETYL-L-GLUTAMATE

(-) Sites  (19, 19)

Asymmetric Unit (19, 19)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:69 , GLY A:70 , GLY A:71 , ILE A:74 , ARG A:92 , SER A:174 , ASN A:185 , ILE A:186 , ASN A:187 , ALA A:188BINDING SITE FOR RESIDUE NLG A1292
02AC2SOFTWAREGLU A:277 , THR A:280 , HOH A:2027 , HOH A:2028BINDING SITE FOR RESIDUE NA A1293
03AC3SOFTWAREGLY B:69 , GLY B:70 , GLY B:71 , ILE B:74 , ARG B:92 , SER B:174 , ASN B:185 , ILE B:186 , ALA B:188BINDING SITE FOR RESIDUE NLG B1297
04AC4SOFTWAREGLU B:277 , THR B:280 , HOH B:2022BINDING SITE FOR RESIDUE NA B1298
05AC5SOFTWAREGLY C:69 , GLY C:70 , GLY C:71 , ILE C:74 , ARG C:92 , SER C:174 , ASN C:185 , ALA C:188BINDING SITE FOR RESIDUE NLG C1292
06AC6SOFTWAREGLU C:277 , THR C:280 , HOH C:2014 , HOH C:2015BINDING SITE FOR RESIDUE NA C1293
07AC7SOFTWAREGLY D:69 , GLY D:70 , GLY D:71 , ILE D:74 , ARG D:92 , ASN D:185 , ALA D:188BINDING SITE FOR RESIDUE NLG D1294
08AC8SOFTWAREGLU D:277 , THR D:280BINDING SITE FOR RESIDUE NA D1295
09AC9SOFTWAREGLY E:69 , GLY E:70 , GLY E:71 , ILE E:74 , ARG E:92 , ASN E:185 , ALA E:188BINDING SITE FOR RESIDUE NLG E1294
10BC1SOFTWAREGLY D:181 , LYS E:112 , ASP E:113 , ARG E:117BINDING SITE FOR RESIDUE GOL E1295
11BC2SOFTWAREGLU E:277 , THR E:280BINDING SITE FOR RESIDUE NA E1296
12BC3SOFTWAREGLY F:69 , GLY F:70 , GLY F:71 , ARG F:92 , VAL F:149 , ASN F:185 , ALA F:188BINDING SITE FOR RESIDUE NLG F1293
13BC4SOFTWAREGLU F:277 , THR F:280 , HOH F:2022 , HOH F:2023BINDING SITE FOR RESIDUE NA F1294
14BC5SOFTWAREGLN G:39 , GLY G:87 , ASP G:88 , ARG I:103BINDING SITE FOR RESIDUE CL G1112
15BC6SOFTWAREARG G:103 , ILE H:86 , GLY H:87 , HOH H:2011BINDING SITE FOR RESIDUE CL H1109
16BC7SOFTWAREARG H:101 , ARG H:103 , ILE I:86 , GLY I:87 , ASP I:88 , HOH I:2008BINDING SITE FOR RESIDUE CL H1110
17BC8SOFTWAREARG J:103 , ILE K:86 , GLY K:87BINDING SITE FOR RESIDUE CL J1111
18BC9SOFTWAREILE J:86 , GLY J:87 , ARG L:103BINDING SITE FOR RESIDUE CL J1112
19CC1SOFTWAREARG K:101 , ARG K:103 , GLY L:87 , ASP L:88 , HOH L:2010BINDING SITE FOR RESIDUE CL K1109

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2V5H)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Gly B:9 -Ala B:10
2Pro B:220 -Glu B:221
3Asp C:12 -Arg C:13
4Gly D:292 -Tyr D:293
5Ile F:6 -Glu F:7
6Gln H:39 -Lys H:40

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2V5H)

(-) PROSITE Motifs  (3, 18)

Asymmetric/Biological Unit (3, 18)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1PII_GLNB_DOMPS51343 P-II protein family profile.GLNB_SYNE71-112
 
 
 
 
 		  6G:1-111
H:1-108
I:1-111
J:1-110
K:1-108
L:1-109
2PII_GLNB_UMPPS00496 P-II protein uridylation site.GLNB_SYNE746-51
 
 
 
 
 		  6G:46-51
H:46-51
I:46-51
J:46-51
K:46-51
L:46-51
3PII_GLNB_CTERPS00638 P-II protein C-terminal region signature.GLNB_SYNE783-96
 
 
 
 
 		  6G:83-96
H:83-96
I:83-96
J:83-96
K:83-96
L:83-96

(-) Exons   (0, 0)

(no "Exon" information available for 2V5H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:284
 aligned with ARGB_SYNE7 | Q6V1L5 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:284
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287    
           ARGB_SYNE7     8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 291
               SCOP domains d2v5ha_ A: automated matches                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh....eee..eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee......eeeee........eeeeeeeeehhhhhhhhhhh.eeeeee.eee...eeeeehhhhhhhhhhhhh.eeeeeeee....eee......eee.eeehhhhhhhhhhh.....hhhhhhhhhhhhh...eeeeeeee...hhhhhhhh....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h A   8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 291
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287    


Chain B from PDB  Type:PROTEIN  Length:289
 aligned with ARGB_SYNE7 | Q6V1L5 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:289
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287         
           ARGB_SYNE7     8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYHEA 296
               SCOP domains d2v5hb_ B: automated matches                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh....eee..eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee......eeeee........eeeeeeeeehhhhhhhhhhh.eeeeee.eee...eeeeehhhhhhhhhhhhh.eeeeeeee....eee......eee.eeehhhhhhhhhhh.....hhhhhhhhhhhhh...eeeeeeee...hhhhhhhh....eeeeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h B   8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGYHEA 296
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287         


Chain C from PDB  Type:PROTEIN  Length:284
 aligned with ARGB_SYNE7 | Q6V1L5 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:284
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287    
           ARGB_SYNE7     8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 291
               SCOP domains d2v5hc_ C: automated matches                                                                                                                                                                                                                                                                 SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh....eee..eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee......eeeee........eeeeeeeeehhhhhhhhhhh.eeeeee.eee...eeeeehhhhhhhhhhhhh.eeeeeeee....eee......eee.eeehhhhhhhhhhh.....hhhhhhhhhhhhh...eeeeeeee...hhhhhhhh....eeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h C   8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGS 291
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287    


Chain D from PDB  Type:PROTEIN  Length:286
 aligned with ARGB_SYNE7 | Q6V1L5 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:286
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287      
           ARGB_SYNE7     8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGY 293
               SCOP domains d2v5hd_ D: automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh....eee..eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee......eeeee........eeeeeeeeehhhhhhhhhhh.eeeeee.eee...eeeeehhhhhhhhhhhhh.eeeeeeee....eee......eee.eeehhhhhhhhhhh.....hhhhhhhhhhhhh...eeeeeeee...hhhhhhhh....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h D   8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGY 293
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287      


Chain E from PDB  Type:PROTEIN  Length:286
 aligned with ARGB_SYNE7 | Q6V1L5 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:286
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287      
           ARGB_SYNE7     8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGY 293
               SCOP domains d2v5he_ E: automated matches                                                                                                                                                                                                                                                                   SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh....eee..eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee......eeeee........eeeeeeeeehhhhhhhhhhh.eeeeee.eee...eeeeehhhhhhhhhhhhh.eeeeeeee....eee......eee.eeehhhhhhhhhhh.....hhhhhhhhhhhhh...eeeeeeee...hhhhhhhh....eeeeee.... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h E   8 AGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSGY 293
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287      


Chain F from PDB  Type:PROTEIN  Length:287
 aligned with ARGB_SYNE7 | Q6V1L5 from UniProtKB/Swiss-Prot  Length:301

    Alignment length:287
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       
           ARGB_SYNE7     6 IEAGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSG 292
               SCOP domains d2v5hf_ F: automated matches                                                                                                                                                                                                                                                                    SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ------------------------AA_kinase-2v5hF01 F:30-267                                                                                                                                                                                                                    ------------------------- Pfam domains (1)
           Pfam domains (2) ------------------------AA_kinase-2v5hF02 F:30-267                                                                                                                                                                                                                    ------------------------- Pfam domains (2)
           Pfam domains (3) ------------------------AA_kinase-2v5hF03 F:30-267                                                                                                                                                                                                                    ------------------------- Pfam domains (3)
           Pfam domains (4) ------------------------AA_kinase-2v5hF04 F:30-267                                                                                                                                                                                                                    ------------------------- Pfam domains (4)
           Pfam domains (5) ------------------------AA_kinase-2v5hF05 F:30-267                                                                                                                                                                                                                    ------------------------- Pfam domains (5)
           Pfam domains (6) ------------------------AA_kinase-2v5hF06 F:30-267                                                                                                                                                                                                                    ------------------------- Pfam domains (6)
         Sec.struct. author .......hhhhhhhhhhhhhhh..eeeeeee......hhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhh....eee..eee.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee......eeeee........eeeeeeeeehhhhhhhhhhh.eeeeee.eee...eeeeehhhhhhhhhhhhh.eeeeeeee....eee......eee.eeehhhhhhhhhhh.....hhhhhhhhhhhhh...eeeeeeee...hhhhhhhh....eeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h F   6 IEAGAADRVRILSEALPYLQQFAGRTVVVKYGGAAMKQEELKEAVMRDIVFLACVGMRPVVVHGGGPEINAWLGRVGIEPQFHNGLRVTDADTMEVVEMVLVGRVNKDIVSRINTTGGRAVGFCGTDGRLVLARPHDQEGIGFVGEVNSVNSEVIEPLLERGYIPVISSVAADENGQSFNINADTVAGEIAAALNAEKLILLTDTRGILEDPKRPESLIPRLNIPQSRELIAQGIVGGGMIPKVDCCIRSLAQGVRAAHIIDGRIPHALLLEIFTDAGIGTMIVGSG 292
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       


Chain G from PDB  Type:PROTEIN  Length:111
 aligned with GLNB_SYNE7 | P0A3F4 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:111
                                    10        20        30        40        50        60        70        80        90       100       110 
           GLNB_SYNE7     1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
               SCOP domains d2v5hg_ G: PII (product of glnB)                                                                                SCOP domains
               CATH domains 2v5hG00 G:1-111  [code=3.30.70.120, no name defined]                                                            CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhh....eeeeeeeee.......eee..eee....eeeeeeeeee...hhhhhhhhhhhhhh......eeeeee..eeeeee..eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PII_GLNB_DOM  PDB: G:1-111 UniProt: 1-112                                                                       PROSITE (1)
                PROSITE (2) ---------------------------------------------PII_GL-------------------------------PII_GLNB_CTER --------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h G   1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
                                    10        20        30        40        50        60        70        80        90       100       110 


Chain H from PDB  Type:PROTEIN  Length:108
 aligned with GLNB_SYNE7 | P0A3F4 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           GLNB_SYNE7     1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKN 108
               SCOP domains d2v5hh_ H: PII (product of glnB)                                                                             SCOP domains
               CATH domains 2v5hH00 H:1-108  [code=3.30.70.120, no name defined]                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhh....eeeeeeeee.......eee..eee....eeeeeeeeee...hhhhhhhhhhhhhh......eeeeee..eeeeee..eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PII_GLNB_DOM  PDB: H:1-108 UniProt: 1-112                                                                    PROSITE (1)
                PROSITE (2) ---------------------------------------------PII_GL-------------------------------PII_GLNB_CTER ------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2v5h H   1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKN 108
                                    10        20        30        40        50        60        70        80        90       100        


Chain I from PDB  Type:PROTEIN  Length:109
 aligned with GLNB_SYNE7 | P0A3F4 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:111
                                    10        20        30        40        50        60        70        80        90       100       110 
           GLNB_SYNE7     1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
               SCOP domains d2v5hi_ I: PII (product of glnB)                                                                                SCOP domains
               CATH domains 2v5hI00 I:1-111  [code=3.30.70.120, no n  ame defined]                                                          CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhh....eeeeeeeee....--.eee..eee....eeeeeeeeee...hhhhhhhhhhhhhh......eeeeee..eeeeee..eeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PII_GLNB_DOM  PDB: I:1-111 UniProt: 1-112                                                                       PROSITE (1)
                PROSITE (2) ---------------------------------------------PII_GL-------------------------------PII_GLNB_CTER --------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h I   1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQK--TERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNADA 111
                                    10        20        30        40  |     50        60        70        80        90       100       110 
                                                                  40 43                                                                    


Chain J from PDB  Type:PROTEIN  Length:110
 aligned with GLNB_SYNE7 | P0A3F4 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:110
                                    10        20        30        40        50        60        70        80        90       100       110
           GLNB_SYNE7     1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNAD 110
               SCOP domains d2v5hj_ J: PII (product of glnB)                                                                               SCOP domains
               CATH domains 2v5hJ00 J:1-110  [code=3.30.70.120, no name defined]                                                           CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhh....eeeeeeeee.......eee..eee....eeeeeeeeee...hhhhhhhhhhhhhh......eeeeee..eeeeee..eeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PII_GLNB_DOM  PDB: J:1-110 UniProt: 1-112                                                                      PROSITE (1)
                PROSITE (2) ---------------------------------------------PII_GL-------------------------------PII_GLNB_CTER -------------- PROSITE (2)
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h J   1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNAD 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain K from PDB  Type:PROTEIN  Length:108
 aligned with GLNB_SYNE7 | P0A3F4 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:108
                                    10        20        30        40        50        60        70        80        90       100        
           GLNB_SYNE7     1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKN 108
               SCOP domains d2v5hk_ K: PII (product of glnB)                                                                             SCOP domains
               CATH domains 2v5hK00 K:1-108  [code=3.30.70.120, no name defined]                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeee...hhhhhhhhhhhh....eeeeeeeee.......eee..eee....eeeeeeeeee...hhhhhhhhhhhhhh......eeeeee..eeeeee..eeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                PROSITE (1) PII_GLNB_DOM  PDB: K:1-108 UniProt: 1-112                                                                    PROSITE (1)
                PROSITE (2) ---------------------------------------------PII_GL-------------------------------PII_GLNB_CTER ------------ PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------ Transcript
                 2v5h K   1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKN 108
                                    10        20        30        40        50        60        70        80        90       100        


Chain L from PDB  Type:PROTEIN  Length:109
 aligned with GLNB_SYNE7 | P0A3F4 from UniProtKB/Swiss-Prot  Length:112

    Alignment length:109
                                    10        20        30        40        50        60        70        80        90       100         
           GLNB_SYNE7     1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNA 109
               SCOP domains d2v5hl_ L: PII (product of glnB)                                                                              SCOP domains
               CATH domains 2v5hL00 L:1-109  [code=3.30.70.120, no name defined]                                                          CATH domains
           Pfam domains (1) ---P-II-2v5hL01 L:4-105                                                                                  ---- Pfam domains (1)
           Pfam domains (2) ---P-II-2v5hL02 L:4-105                                                                                  ---- Pfam domains (2)
           Pfam domains (3) ---P-II-2v5hL03 L:4-105                                                                                  ---- Pfam domains (3)
           Pfam domains (4) ---P-II-2v5hL04 L:4-105                                                                                  ---- Pfam domains (4)
           Pfam domains (5) ---P-II-2v5hL05 L:4-105                                                                                  ---- Pfam domains (5)
           Pfam domains (6) ---P-II-2v5hL06 L:4-105                                                                                  ---- Pfam domains (6)
         Sec.struct. author .eeeeeee...hhhhhhhhhhhh....eeeeeeeee.......eee..eee....eeeeeeeeee...hhhhhhhhhhhhhh......eeeeee..eeeeee..eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) PII_GLNB_DOM  PDB: L:1-109 UniProt: 1-112                                                                     PROSITE (1)
                PROSITE (2) ---------------------------------------------PII_GL-------------------------------PII_GLNB_CTER ------------- PROSITE (2)
                 Transcript ------------------------------------------------------------------------------------------------------------- Transcript
                 2v5h L   1 MKKIEAIIRPFKLDEVKIALVNAGIVGMTVSEVRGFGRQKGQTERYRGSEYTVEFLQKLKLEIVVEDAQVDTVIDKIVAAARTGEIGDGKIFVSPVDQTIRIRTGEKNA 109
                                    10        20        30        40        50        60        70        80        90       100
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Class: Alpha and beta proteins (a+b) (23004)
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 6)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (2, 12)

Asymmetric/Biological Unit
(-)
Clan: GlnB-like (50)
(-)
Clan: no clan defined [family: AA_kinase] (20)

(-) Gene Ontology  (17, 20)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (ARGB_SYNE7 | Q6V1L5)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003991    acetylglutamate kinase activity    Catalysis of the reaction: ATP + N-acetyl-L-glutamate = ADP + N-acetyl-L-glutamate-5-phosphate.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006526    arginine biosynthetic process    The chemical reactions and pathways resulting in the formation of arginine, 2-amino-5-(carbamimidamido)pentanoic acid.
    GO:0008652    cellular amino acid biosynthetic process    The chemical reactions and pathways resulting in the formation of amino acids, organic acids containing one or more amino substituents.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006561    proline biosynthetic process    The chemical reactions and pathways resulting in the formation of proline (pyrrolidine-2-carboxylic acid), a chiral, cyclic, nonessential alpha-amino acid found in peptide linkage in proteins.
cellular component
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

Chain G,H,I,J,K,L   (GLNB_SYNE7 | P0A3F4)
molecular function
    GO:0030234    enzyme regulator activity    Binds to and modulates the activity of an enzyme.
    GO:0042802    identical protein binding    Interacting selectively and non-covalently with an identical protein or proteins.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
    GO:0050790    regulation of catalytic activity    Any process that modulates the activity of an enzyme.
    GO:0006808    regulation of nitrogen utilization    Any process that modulates the frequency, rate or extent of nitrogen utilization.
    GO:0006355    regulation of transcription, DNA-templated    Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
    GO:0006351    transcription, DNA-templated    The cellular synthesis of RNA on a template of DNA.

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  GLNB_SYNE7 | P0A3F4
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  2.7.2.8
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        ARGB_SYNE7 | Q6V1L5: 2jj4
        GLNB_SYNE7 | P0A3F4: 1qy7 2jj4 2xbp 2xg8 2xul 2xzw 4aff 4c3k 4c3l 4c3m

(-) Related Entries Specified in the PDB File

1qy7 THE STRUCTURE OF THE PII PROTEIN FROM THE CYANOBACTERIASYNECHOCOCCUS SP. PCC 7942
2jj4 THE COMPLEX OF PII AND ACETYLGLUTAMATE KINASE FROM SYNECHOCOCCUS ELONGATUS PCC7942