2V0G - JenaLib

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A TRNA(LEU) TRANSCRIPT WITH 5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1-BENZOXABOROLE (AN2690) FORMING AN ADDUCT TO THE RIBOSE OF ADENOSINE-76 IN THE ENZYME EDITING SITE.

Authors :   F. Rock, W. Mao, A. Yaremchuk, M. Tukalo, T. Crepin, H. Zhou, Y. Zhang, V. Hernandez, T. Akama, S. Baker, J. Plattner, L. Shapiro, S. A. Martinis, S. J. Benkovic, S. Cusack, M. R. K. Alley

Date :   14 May 07 (Deposition) - 03 Jul 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   3.50

Chains :   Asym. Unit : A,B,D,F
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: D,F  (1x)

Keywords :   Class I Aminoacyl- Trna Synthetase, Protein Biosynthesis, Aminoacyl-Trna Synthetase, Atp + L-Leucine + Trna (Leu) Gives Amp + Ppi L-Leucyl-Trna Synthetase, Metal-Binding, Nucleotide-Binding Zinc, Ligase, Editing, Synthetase, Atp- Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Rock, W. Mao, A. Yaremchuk, M. Tukalo, T. Crepin, H. Zhou, Y. Zhang, V. Hernandez, T. Akama, S. Baker, J. Plattner, L. Shapiro, S. A. Martinis, S. J. Benkovic, S. Cusack, M. R. K. Alley
An Antifungal Agent Inhibits An Aminoacyl-Trna Synthetase By Trapping Trna In The Editing Site.
Science V. 316 1759 2007
PubMed-ID: 17588934 | Reference-DOI: 10.1126/SCIENCE.1142189

Molecule 1 - AMINOACYL-TRNA SYNTHETASE
	Chains	:	A, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Strain	:	HB-27
	Synonym	:	LEUCYL-TRNA SYNTHETASE

Molecule 2 - TRNALEU
	Chains	:	B, F
	Organism Scientific	:	THERMUS THERMOPHILUS
	Organism Taxid	:	274
	Other Details	:	TRNALEU TRANSCRIPT WITH ANTICODON CAG
	Synthetic	:	YES

		1	2	3	4
Asymmetric Unit	:	A	B	D	F
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			D	F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (5, 20)

No.	Name	Count	Type	Full Name
1	ANZ	2	Mod. Nucleotide	[(6-AMINO-9H-PURIN-9-YL)-[5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1-BENZOXABOROLE]-4'YL]METHYLDIHYDROGEN PHOSPHATE
2	HG	2	Ligand/Ion	MERCURY (II) ION
3	LEU	2	Mod. Amino Acid	LEUCINE
4	SO4	10	Ligand/Ion	SULFATE ION
5	ZN	4	Ligand/Ion	ZINC ION

Biological Unit 1 (3, 9)

No.	Name	Count	Type	Full Name
1	ANZ	1	Mod. Nucleotide	[(6-AMINO-9H-PURIN-9-YL)-[5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1-BENZOXABOROLE]-4'YL]METHYLDIHYDROGEN PHOSPHATE
2	HG	-1	Ligand/Ion	MERCURY (II) ION
3	LEU	1	Mod. Amino Acid	LEUCINE
4	SO4	7	Ligand/Ion	SULFATE ION
5	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (3, 5)

No.	Name	Count	Type	Full Name
1	ANZ	1	Mod. Nucleotide	[(6-AMINO-9H-PURIN-9-YL)-[5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1-BENZOXABOROLE]-4'YL]METHYLDIHYDROGEN PHOSPHATE
2	HG	-1	Ligand/Ion	MERCURY (II) ION
3	LEU	1	Mod. Amino Acid	LEUCINE
4	SO4	3	Ligand/Ion	SULFATE ION
5	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (18, 18)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	CYS A:439 , CYS A:442 , CYS A:484 , CYS A:487	BINDING SITE FOR RESIDUE ZN A1877
02	AC2	SOFTWARE	CYS A:159 , CYS A:162 , CYS A:176 , HIS A:179	BINDING SITE FOR RESIDUE ZN A1878
03	AC3	SOFTWARE	TYR A:102 , CYS A:128 , GLU A:129	BINDING SITE FOR RESIDUE HG A1879
04	AC4	SOFTWARE	ARG A:762	BINDING SITE FOR RESIDUE SO4 A1880
05	AC5	SOFTWARE	GLY A:707 , ARG A:769 , TRP A:795	BINDING SITE FOR RESIDUE SO4 A1881
06	AC6	SOFTWARE	HIS A:49 , HIS A:52 , SER A:639 , LYS A:640	BINDING SITE FOR RESIDUE SO4 A1882
07	AC7	SOFTWARE	ARG A:759	BINDING SITE FOR RESIDUE SO4 A1883
08	AC8	SOFTWARE	LYS A:288	BINDING SITE FOR RESIDUE SO4 A1884
09	AC9	SOFTWARE	ARG A:32 , GLN A:69 , GLY A:70 , TYR A:71	BINDING SITE FOR RESIDUE SO4 A1885
10	BC1	SOFTWARE	GLU A:264 , LEU A:329 , PHE A:330 , GLY A:331 , ARG A:420	BINDING SITE FOR RESIDUE SO4 A1886
11	BC2	SOFTWARE	SER D:706 , GLY D:707 , VAL D:708 , ARG D:769 , ARG D:773 , TRP D:795	BINDING SITE FOR RESIDUE SO4 D1877
12	BC3	SOFTWARE	ARG D:759	BINDING SITE FOR RESIDUE SO4 D1878
13	BC4	SOFTWARE	GLU D:264 , PHE D:330 , GLY D:331 , ARG D:420	BINDING SITE FOR RESIDUE SO4 D1879
14	BC5	SOFTWARE	CYS D:439 , CYS D:484 , CYS D:487	BINDING SITE FOR RESIDUE ZN D1880
15	BC6	SOFTWARE	CYS D:159 , CYS D:162 , CYS D:176 , HIS D:179	BINDING SITE FOR RESIDUE ZN D1881
16	BC7	SOFTWARE	CYS D:128 , GLU D:129	BINDING SITE FOR RESIDUE HG D1882
17	BC8	SOFTWARE	MET A:40 , PHE A:41 , TYR A:43 , ASP A:80 , SER A:504 , TYR A:535 , HIS A:541 , HIS A:545	BINDING SITE FOR RESIDUE LEU A1887
18	BC9	SOFTWARE	PHE D:41 , PRO D:42 , TYR D:43 , HIS D:541	BINDING SITE FOR RESIDUE LEU D1883

(no "SS Bond" information available for 2V0G)

Asymmetric Unit

No.	Residues
1	Glu A:371	-	Pro A:372
2	Leu A:452	-	Pro A:453
3	Met A:530	-	Pro A:531
4	Glu D:371	-	Pro D:372
5	Leu D:452	-	Pro D:453
6	Met D:530	-	Pro D:531

(no "SAP(SNP)/Variant" information available for 2V0G)

(no "PROSITE Motif" information available for 2V0G)

(no "Exon" information available for 2V0G)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:877
 aligned with Q7SIE4_THETH | Q7SIE4 from UniProtKB/TrEMBL  Length:878

    Alignment length:878
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870        
        Q7SIE4_THETH      1 MEKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGRVRGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVVRG  878
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhh.............eeeeee............hhhhhhhhhhhhhhhhhh..eee........hhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh...hhhhh....hhhhhhhhhhhhhhhhh...eeee..eeeee....eeehhh.ee..ee........eeee..eeee.hhhhhhhhhhh......hhhhhhhhhhhhh...eeeeeee......eeeeee.hhhhhhhh.eeee...hhhhhhhh...hhhhhhhhhhhhhhh..hhhhhhh......................ee............eeee....hhhhhhhhhhh.......ee..................ee..hhhhh..hhhhhhhhhhhhhhhhh.eeee.......ee.ee.........eee.....eee.hhhhh.......................hhhhheee......eeee...eehhhhhh.hhhhhh..........hhhhhhhhh...eeeehhhhh.hhhhhhhhhhhhhhh............eee...eeeeeeeeeeee....ee.hhhhhhhhh......hhhhhhh...eee......eeeeeeee.........hhhhhhhhhhhhhhhhhhhhh......eeehhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhh.hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhh..hhhhhhhhhhh..............hhhhh......eeeee..eeeeee......hhhhhhhhhh....hhhhhh......eeee...eeee..-. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2v0g A    1 MEKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGRVRGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV-L 1887
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870     | |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     876 |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      1887

Chain B from PDB  Type:RNA  Length:76
                                                                                                             
                2v0g B    1 GCCGGGGUGGCGGAAGGUAGACGCGCAUGACAUCAUGUGCGCAAGCGUGCGGGUUCAAGUCCCGCCCCCGGCACCa   76
                                    10    ||  21        31||      46 |||||| 50        60        70     |
                                         15|  |          32|       47A|||||                           76-ANZ
                                          18  |           38        47B||||                             
                                            20A                      47C|||                             
                                                                      47D||                             
                                                                       47E|                             
                                                                        47F

Chain D from PDB  Type:PROTEIN  Length:877
 aligned with Q7SIE4_THETH | Q7SIE4 from UniProtKB/TrEMBL  Length:878

    Alignment length:878
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870        
        Q7SIE4_THETH      1 MEKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGRVRGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVVRG  878
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tRNA-synt_1_2-2v0gD03 D:221-406                                                                                                                                                           ------tRNA-synt_1-2v0gD01 D:413-581                                                                                                                                            ----------------------------------------------------------------------------------------------------------------------------------------Anticodon_1-2v0gD07 D:718-843                                                                                                 ----------------------------------- Pfam domains (1)
           Pfam domains (2) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------tRNA-synt_1_2-2v0gD04 D:221-406                                                                                                                                                           ------tRNA-synt_1-2v0gD02 D:413-581                                                                                                                                            ----------------------------------------------------------------------------------------------------------------------------------------Anticodon_1-2v0gD08 D:718-843                                                                                                 ----------------------------------- Pfam domains (2)
           Pfam domains (3) ----------------------------------tRNA-synt_1g-2v0gD05 D:35-229                                                                                                                                                                      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (3)
           Pfam domains (4) ----------------------------------tRNA-synt_1g-2v0gD06 D:35-229                                                                                                                                                                      ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains (4)
         Sec.struct. author ....hhhhhhhhhhhhhhhh.............eeeeee.........hhhhhhhhhhhhhhhhhhhhhh.eee........hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhh....hhhhh....hhhhhhhhhhhhhhhhhh....ee....ee......eehhhhh...................eeeehhhhhhhhhhhhhhhh..hhhhhhhhhhhhheeeeeeeeee......eeeeee.hhhhhhhh.eeee....hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhh.....eee...............eeee..........eeee....hhhhhhhhhhhh......ee..................ee..hhhhh...hhhhhhhhhhhhhhhh.eeeeeee....ee............eee.....eee.hhhhh..................hhhhhhhhhhhee......ee.......hhhhhhhhhhhhh..........hhhhhhhhh...eeee......hhhhhhhhhhhhhhhhh..........eee...eeeeeeeee.............hhhhh...........hhhhh.eee.......eeeeeee.........hhhhhhhhh.hhhhhhhhhhh......ee.hhhhhhhhhhhhhhhhhhh..hhhhhhh..........hhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh..hhhhhhhhhhhhh..hhhhhh....hhhhhh...eeeeeee..eeeeeeee....hhhhhhhhhh....hhhhhh.....eeeee...eeeee.-. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                2v0g D    1 MEKYNPHAIEAKWQRFWEEKGFMKAKDLPGGRGKQYVLVMFPYPSGDLHMGHLKNYTMGDVLARFRRMQGYEVLHPMGWDAFGLPAENAALKFGVHPKDWTYANIRQAKESLRLMGILYDWDREVTTCEPEYYRWNQWIFLKMWEKGLAYRAKGLVNWCPKCQTVLANEQVVEGRCWRHEDTPVEKRELEQWYLRITAYAERLLKDLEGLNWPEKVKAMQRAWIGRSEGAEILFPVEGKEVRIPVFTTRPDTLFGATFLVLAPEHPLTLELAAPEKREEVLAYVEAAKRKTEIERQAEGREKTGVFLGAYALNPATGERIPIWTADYVLFGYGTGAIMAVPAHDQRDYEFARKFGLPIKKVIERPGEPLPEPLERAYEEPGIMVNSGPFDGTESEEGKRKVIAWLEEKGLGKGRVTYRLRDWLISRQRYWGTPIPMVHCEACGVVPVPEEELPVLLPDLKDVEDIRPKGKSPLEAHPEFYETTCPKCGGPAKRDTDTMDTFFDSSWYYLRYTDPHNDRLPFDPEKANAWMPVDQYIGGVEHAVLHLLYSRFFTKFLHDLGMVKVEEPFQGLFTQGMVLAWTDFGPVEVEGSVVRLPEPTRIRLEIPESALSLEDVRKMGAELRPHEDGTLHLWKPAVMSKSKGNGVMVGPFVKEQGADIARITILFAAPPENEMVWTEEGVQGAWRFLNRIYRRVAEDREALLETSGVFQAEALEGKDRELYGKLHETLKKVTEDLEALRFNTAIAALMEFLNALYEYRKDRPVTPVYRTAIRYYLQMLFPFAPHLAEELWHWFWPDSLFEAGWPELDEKALEKDVVEVAVQVNGRVRGTIHIPKDAPLEVARAEALKVRNVRAHLEGKEVVKEIYVPGKILNLVV-L 1883
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790       800       810       820       830       840       850       860       870     | |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     876 |
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      1883

Chain F from PDB  Type:RNA  Length:76
                                                                                                             
                2v0g F    1 GCCGGGGUGGCGGAAGGUAGACGCGCAUGACAUCAUGUGCGCAAGCGUGCGGGUUCAAGUCCCGCCCCCGGCACCa   76
                                    10    ||  21        31||      46 |||||| 50        60        70     |
                                         15|  |          32|       47A|||||                           76-ANZ
                                          18  |           38        47B||||                             
                                            20A                      47C|||                             
                                                                      47D||                             
                                                                       47E|                             
                                                                        47F

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2V0G)

(no "CATH Domain" information available for 2V0G)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: HUP (230)

Family: tRNA-synt_1 (17)

Thermus thermophilus (5)

1a	tRNA-synt_1-2v0gD01	D:413-581
1b	tRNA-synt_1-2v0gD02	D:413-581

Family: tRNA-synt_1_2 (5)

Thermus thermophilus (3)

2a	tRNA-synt_1_2-2v0gD03	D:221-406
2b	tRNA-synt_1_2-2v0gD04	D:221-406

Family: tRNA-synt_1g (19)

Thermus thermophilus (3)

3a	tRNA-synt_1g-2v0gD05	D:35-229
3b	tRNA-synt_1g-2v0gD06	D:35-229

Clan: no clan defined [family: Anticodon_1] (10)

Family: Anticodon_1 (10)

Thermus thermophilus (3)

4a	Anticodon_1-2v0gD07	D:718-843
4b	Anticodon_1-2v0gD08	D:718-843

Asymmetric Unit(hide GO term definitions)

Chain A,D (Q7SIE4_THETH | Q7SIE4)

molecular function
	GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
	GO:0002161	aminoacyl-tRNA editing activity	The hydrolysis of an incorrectly aminoacylated tRNA.
	GO:0004812	aminoacyl-tRNA ligase activity	Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
	GO:0004823	leucine-tRNA ligase activity	Catalysis of the reaction: L-leucine + ATP + tRNA(Leu) = AMP + diphosphate + 2 H(+) + Leu-tRNA(Leu).
	GO:0016874	ligase activity	Catalysis of the joining of two substances, or two groups within a single molecule, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
	GO:0006429	leucyl-tRNA aminoacylation	The process of coupling leucine to leucyl-tRNA, catalyzed by leucyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
	GO:0006450	regulation of translational fidelity	Any process that modulates the ability of the translational apparatus to interpret the genetic code.
	GO:0006418	tRNA aminoacylation for protein translation	The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
	GO:0006412	translation	The cellular metabolic process in which a protein is formed, using the sequence of a mature mRNA or circRNA molecule to specify the sequence of amino acids in a polypeptide chain. Translation is mediated by the ribosome, and begins with the formation of a ternary complex between aminoacylated initiator methionine tRNA, GTP, and initiation factor 2, which subsequently associates with the small subunit of the ribosome and an mRNA or circRNA. Translation ends with the release of a polypeptide chain from the ribosome.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	Cis Peptide Bonds
		Glu A:371 - Pro A:372	[ RasMol ]
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		Leu A:452 - Pro A:453	[ RasMol ]
		Leu D:452 - Pro D:453	[ RasMol ]
		Met A:530 - Pro A:531	[ RasMol ]
		Met D:530 - Pro D:531	[ RasMol ]

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	2v0g
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UniProtKB/TrEMBL
	Q7SIE4_THETH \| Q7SIE4	:	1h3n 1obh 2bte 2byt 2v0c

1h3n	LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A SULPHAMOYL ANALOGUE OF LEUCYL-ADENYLATE
1obc	LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A POST-TRANSFER EDITING SUBSTRATE ANALOGUE
1obh	LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A PRE-TRANSFER EDITING SUBSTRATE ANALOGUE
2bte	THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH WITH A TRNALEU TRANSCRIPT IN THE POST-EDITING CONFORMATION AND A POST- TRANSFER EDITING SUBSRATE ANALOGUE
2byt	THERMUS THERMOPHILUS LEUCYL-TRNA SYNTHETASE COMPLEXED WITH WITH A TRNALEU TRANSCRIPT IN THE POST-EDITING CONFORMATION
2v0c	LEUCYL-TRNA SYNTHETASE FROM THERMUS THERMOPHILUS COMPLEXED WITH A SULPHAMOYL ANALOGUE OF LEUCYL-ADENYLATE IN THE SYNTHETIC SITE AND AN ADDUCT OF AMP WITH 5-FLUORO-1,3-DIHYDRO-1-HYDROXY-2,1- BENZOXABOROLE (AN2690) IN THE EDITING SITE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 20)

Sites (18, 18)

SS Bonds (0, 0)

Cis Peptide Bonds (6, 6)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (4, 8)

Gene Ontology (12, 12)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File