2RHL - JenaLib

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Title :   SYNTHETIC GENE ENCODED BACILLUS SUBTILIS FTSZ NCS DIMER WITH BOUND GDP

Authors :   S. Lovell, Z. Halloran, K. Hjerrild, D. Sheridan, A. Burgin, L. Stewart, Accelerated Technologies Center For Gene To 3D Structure (Atcg3D)

Date :   09 Oct 07 (Deposition) - 21 Oct 08 (Release) - 01 Sep 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.45

Chains :   Asym. Unit : A,B
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)

Keywords :   Cell Division Protein, Tubulin Homolog, Gtp-Binding, Polymerization, Gtpase, Cell Cycle, Structural Genomics, Psi-2, Protein Structure Initiative, Accelerated Technologies Center For Gene To 3D Structure, Atcg3D (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Raymond, S. Lovell, D. Lorimer, J. Walchli, M. Mixon, E. Wallace, K. Thompkins, K. Archer, A. Burgin, L. Stewart
Combined Protein Construct And Synthetic Gene Engineering For Heterologous Protein Expression And Crystallization Using Gene Composer.
Bmc Biotechnol. V. 9 37 2009
PubMed-ID: 19383143 | Reference-DOI: 10.1186/1472-6750-9-37
(for further references see the PDB file header)

Molecule 1 - CELL DIVISION PROTEIN FTSZ
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28C
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Fragment	:	RESIDUES 12-315
	Gene	:	FTSZ
	Organism Scientific	:	BACILLUS SUBTILIS
	Organism Taxid	:	1423

		1	2
Asymmetric Unit	:	A	B
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (1, 2)

No.	Name	Count	Type	Full Name
1	GDP	2	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE

Biological Unit 1 (1, 1)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE

Biological Unit 2 (1, 1)

No.	Name	Count	Type	Full Name
1	GDP	1	Ligand/Ion	GUANOSINE-5'-DIPHOSPHATE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:20 , GLY A:21 , GLY A:22 , ASN A:25 , GLY A:104 , GLY A:107 , GLY A:108 , THR A:109 , GLY A:110 , PRO A:135 , GLU A:139 , ARG A:143 , PHE A:183 , ASP A:187 , HOH A:337 , HOH A:338 , HOH A:344 , HOH A:348 , HOH A:369 , HOH A:380	BINDING SITE FOR RESIDUE GDP A 1
2	AC2	SOFTWARE	GLY B:20 , GLY B:21 , GLY B:22 , ASN B:25 , GLY B:104 , GLY B:107 , GLY B:108 , THR B:109 , GLY B:110 , PRO B:135 , GLU B:139 , ARG B:143 , PHE B:183 , ALA B:186 , ASP B:187 , HOH B:340 , HOH B:343 , HOH B:345 , HOH B:350 , HOH B:351 , HOH B:353 , HOH B:362 , HOH B:370	BINDING SITE FOR RESIDUE GDP B 1

(no "SS Bond" information available for 2RHL)

(no "Cis Peptide Bond" information available for 2RHL)

(no "SAP(SNP)/Variant" information available for 2RHL)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTSZ_1	PS01134	FtsZ protein signature 1.	FTSZ_BACSU	44-78	2	A:44-78 B:44-78
2	FTSZ_2	PS01135	FtsZ protein signature 2.	FTSZ_BACSU	97-118	2	A:97-118 B:97-118

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTSZ_1	PS01134	FtsZ protein signature 1.	FTSZ_BACSU	44-78	1	A:44-78 -
2	FTSZ_2	PS01135	FtsZ protein signature 2.	FTSZ_BACSU	97-118	1	A:97-118 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	FTSZ_1	PS01134	FtsZ protein signature 1.	FTSZ_BACSU	44-78	1	- B:44-78
2	FTSZ_2	PS01135	FtsZ protein signature 2.	FTSZ_BACSU	97-118	1	- B:97-118

(no "Exon" information available for 2RHL)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:305
 aligned with FTSZ_BACSU | P17865 from UniProtKB/Swiss-Prot  Length:382

    Alignment length:305
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311     
           FTSZ_BACSU    12 ASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGFI 316
               SCOP domains d2rhla1 A:12-208 Cell-division protein FtsZ                                                                                                                                                          d2rhla2 A:209-316 Cell-division protein FtsZ                                                                 SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhh.....eeeeee.hhhhhhh....eeee.hhhhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh......eeeeeee...hhhhhhhhhhhh......hhhhh.eeeeeeee....hhhhhhhhhhhhhhhh....eeeeeeee.......eeeeeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------FTSZ_1  PDB: A:44-78 UniProt: 44-78------------------FTSZ_2  PDB: A:97-118 ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rhl A  12 ASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGFL 316
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311

Chain B from PDB  Type:PROTEIN  Length:315
 aligned with FTSZ_BACSU | P17865 from UniProtKB/Swiss-Prot  Length:382

    Alignment length:328
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
           FTSZ_BACSU    12 ASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGFIEQEKDVTKPQRPSLNQSIKTHNQ 339
               SCOP domains d2rhlb1 B:12-208 Cell-division protein FtsZ                                                                                                                                                          d2rhlb2 B:209-326 Cell-division protein FtsZ                                                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Tubulin-2rhlB03 B:13-185                                                                                                                                                     ------------------------------------FtsZ_C-2rhlB01 B:222-315                                                                      ------------------------ Pfam domains (1)
           Pfam domains (2) -Tubulin-2rhlB04 B:13-185                                                                                                                                                     ------------------------------------FtsZ_C-2rhlB02 B:222-315                                                                      ------------------------ Pfam domains (2)
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhh.....eeeeee.hhhhhh.....eeee.hhhhhh......hhhhhhhhhhhhhhhhhhhh....eeeeeee...hhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhh...eeeeeeeeee..hhhhhhhhhhhh......hhhhh.eeeeeeee....hhhhhhhhhhhhhhhh....eeeeeeee......eeeeeeeeeeehh-------------hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------FTSZ_1  PDB: B:44-78 UniProt: 44-78------------------FTSZ_2  PDB: B:97-118 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rhl B  12 ASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGFLE-------------NLYFQGHHH 326
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311     |   -       318        
                                                                                                                                                                                                                                                                                                                                           317           318

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "CATH Domain" information available for 2RHL)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Tubulin-like (34)

Family: FtsZ_C (20)

Bacillus subtilis (4)

1a	FtsZ_C-2rhlB01	B:222-315
1b	FtsZ_C-2rhlB02	B:222-315

Family: Tubulin (34)

Bacillus subtilis (4)

2a	Tubulin-2rhlB03	B:13-185
2b	Tubulin-2rhlB04	B:13-185

Asymmetric Unit(hide GO term definitions)

Chain A,B (FTSZ_BACSU | P17865)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0043093	FtsZ-dependent cytokinesis	A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0051258	protein polymerization	The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
cellular component
	GO:0032153	cell division site	The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
	GO:0030428	cell septum	A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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	2rhl
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	FTSZ_BACSU \| P17865
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	FTSZ_BACSU \| P17865	:	2rhh 2rhj 2rho 2vam 2vxy 4u39

2rhh
2rhj
2rho	RELATED ID: ATCG3D_187 RELATED DB: TARGETDB

Description

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Ligands, Modified Residues, Ions (1, 2)

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