2RHJ - JenaLib

Title :   SYNTHETIC GENE ENCODED BACILLUS SUBTILIS FTSZ WITH TWO SULFATE IONS AND SODIUM ION IN THE NUCLEOTIDE POCKET

Authors :   S. Lovell, Z. Halloran, K. Hjerrild, D. Sheridan, A. Burgin, L. Stewart, Accelerated Technologies Center For Gene To 3D Structure (Atcg3D)

Date :   09 Oct 07 (Deposition) - 21 Oct 08 (Release) - 01 Sep 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.76

Chains :   Asym. Unit : A
Biol. Unit 1: A  (2x)
Biol. Unit 2: A  (1x)

Keywords :   Cell Division Protein, Tubulin Homolog, Gtp-Binding, Polymerization, Gtpase, Cell Cycle, Structural Genomics, Psi-2, Protein Structure Initiative, Accelerated Technologies Center For Gene To 3D Structure, Atcg3D (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Raymond, S. Lovell, D. Lorimer, J. Walchli, M. Mixon, E. Wallace, K. Thompkins, K. Archer, A. Burgin, L. Stewart
Combined Protein Construct And Synthetic Gene Engineering For Heterologous Protein Expression And Crystallization Using Gene Composer.
Bmc Biotechnol. V. 9 37 2009
PubMed-ID: 19383143 | Reference-DOI: 10.1186/1472-6750-9-37
(for further references see the PDB file header)

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 9)

Sites (9, 9)

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	GLY A:62 , ALA A:63 , LYS A:64 , SER A:85 , HOH A:454 , HOH A:490	BINDING SITE FOR RESIDUE ACT A 1
2	AC2	SOFTWARE	THR A:45 , ALA A:71 , GLY A:72 , ALA A:73 , GLY A:108 , THR A:109 , NA A:337 , HOH A:415 , HOH A:444	BINDING SITE FOR RESIDUE SO4 A 336
3	AC3	SOFTWARE	GLY A:21 , GLY A:22 , GLN A:48 , GLY A:104 , NA A:337 , HOH A:348 , HOH A:435 , HOH A:436 , HOH A:452	BINDING SITE FOR RESIDUE SO4 A 2
4	AC4	SOFTWARE	SER A:152 , LYS A:155 , GLY A:222 , LEU A:316 , GLU A:317 , ASN A:318 , HOH A:394	BINDING SITE FOR RESIDUE SO4 A 3
5	AC5	SOFTWARE	ALA A:252 , ALA A:253 , GLN A:322 , HOH A:358 , HOH A:507	BINDING SITE FOR RESIDUE SO4 A 4
6	AC6	SOFTWARE	SO4 A:2 , GLY A:110 , SO4 A:336 , HOH A:451	BINDING SITE FOR RESIDUE NA A 337
7	AC7	SOFTWARE	LEU A:145 , GLY A:256 , ALA A:257 , ASP A:289 , HOH A:449 , HOH A:467 , HOH A:476 , HOH A:504	BINDING SITE FOR RESIDUE PG4 A 338
8	AC8	SOFTWARE	ALA A:279 , ASP A:280 , MET A:292 , PHE A:294	BINDING SITE FOR RESIDUE PG4 A 339
9	AC9	SOFTWARE	GLY A:233 , GLU A:234 , ARG A:236 , ASP A:304	BINDING SITE FOR RESIDUE PG4 A 340

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 2)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:311
 aligned with FTSZ_BACSU | P17865 from UniProtKB/Swiss-Prot  Length:382

    Alignment length:328
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331        
           FTSZ_BACSU    12 ASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGFIEQEKDVTKPQRPSLNQSIKTHNQ 339
               SCOP domains d2rhja1 A:12-208 Cell-division protein FtsZ                                                                                                                                                          d2rhja2 A:209-322 Cell-division protein FtsZ                                                                                        SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -Tubulin-2rhjA02 A:13-185                                                                                                                                                     ------------------------------------FtsZ_C-2rhjA01 A:222-315                                                                      ------------------------ Pfam domains
         Sec.struct. author ..eeeeeehhhhhhhhhhhhhh.....eeeeee.hhhhhh.....eeee.hhhhhh......hhhhhhhhhhhhhhhhhhhhh...eeeeeee...hhhhhhhhhhhhhhhhh..eeeeeeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeeeehhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhh....eeeeeeeee...hhhhhhhhhhhh......hhhhh.eeeeeeee....hhhhhhhhhhhhhhhh....eeeeeeee.......eeeeeeeeeehhh-----------------hhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------FTSZ_1  PDB: A:44-78 UniProt: 44-78------------------FTSZ_2  PDB: A:97-118 ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rhj A  12 ASIKVIGVGGGGNNAVNRMIENEVQGVEYIAVNTDAQALNLSKAEVKMQIGAKLTRGLGAGANPEVGKKAAEESKEQIEEALKGADMVFVTAGMGGGTGTGAAPVIAQIAKDLGALTVGVVTRPFTFEGRKRQLQAAGGISAMKEAVDTLIVIPNDRILEIVDKNTPMLEAFREADNVLRQGVQGISDLIATPGLINLDFADVKTIMSNKGSALMGIGIATGENRAAEAAKKAISSPLLEAAIDGAQGVLMNITGGTNLSLYEVQEAADIVASASDQDVNMIFGSVINENLKDEIVVTVIATGFLEN-----------------LYFQ 322
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311      |  -         -    |   
                                                                                                                                                                                                                                                                                                                                            318               319

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (2, 2)

CATH Domains (0, 0)

Pfam Domains (2, 2)

Gene Ontology (12, 12)

Asymmetric Unit(hide GO term definitions)

Chain A (FTSZ_BACSU | P17865)

molecular function
	GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
	GO:0003924	GTPase activity	Catalysis of the reaction: GTP + H2O = GDP + phosphate.
	GO:0042802	identical protein binding	Interacting selectively and non-covalently with an identical protein or proteins.
	GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0043093	FtsZ-dependent cytokinesis	A cytokinesis process that involves a set of conserved proteins including FtsZ, and results in the formation of two similarly sized and shaped cells.
	GO:0007049	cell cycle	The progression of biochemical and morphological phases and events that occur in a cell during successive cell replication or nuclear replication events. Canonically, the cell cycle comprises the replication and segregation of genetic material followed by the division of the cell, but in endocycles or syncytial cells nuclear replication or nuclear division may not be followed by cell division.
	GO:0051301	cell division	The process resulting in division and partitioning of components of a cell to form more cells; may or may not be accompanied by the physical separation of a cell into distinct, individually membrane-bounded daughter cells.
	GO:0051258	protein polymerization	The process of creating protein polymers, compounds composed of a large number of component monomers; polymeric proteins may be made up of different or identical monomers. Polymerization occurs by the addition of extra monomers to an existing poly- or oligomeric protein.
cellular component
	GO:0032153	cell division site	The eventual plane of cell division (also known as cell cleavage or cytokinesis) in a dividing cell. In Eukaryotes, the cleavage apparatus, composed of septin structures and the actomyosin contractile ring, forms along this plane, and the mitotic, or meiotic, spindle is aligned perpendicular to the division plane. In bacteria, the cell division site is generally located at mid-cell and is the site at which the cytoskeletal structure, the Z-ring, assembles.
	GO:0030428	cell septum	A structure composed of peptidoglycan and often chitin in addition to other materials. It usually forms perpendicular to the long axis of a cell or hypha and grows centripetally from the cell wall to the center of the cell and often functions in the compartmentalization of a cell into two daughter cells.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.

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