2RFM - JenaLib

Asymmetric Unit (5, 22)

No.	Name	Count	Type	Full Name
1	144	1	Ligand/Ion	TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2	BU2	4	Ligand/Ion	1,3-BUTANEDIOL
3	CL	3	Ligand/Ion	CHLORIDE ION
4	GOL	6	Ligand/Ion	GLYCEROL
5	SO4	8	Ligand/Ion	SULFATE ION

Biological Unit 1 (4, 10)

No.	Name	Count	Type	Full Name
1	144	1	Ligand/Ion	TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2	BU2	2	Ligand/Ion	1,3-BUTANEDIOL
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	GOL	3	Ligand/Ion	GLYCEROL
5	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 2 (3, 9)

No.	Name	Count	Type	Full Name
1	144	-1	Ligand/Ion	TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2	BU2	2	Ligand/Ion	1,3-BUTANEDIOL
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	GOL	3	Ligand/Ion	GLYCEROL
5	SO4	4	Ligand/Ion	SULFATE ION

Biological Unit 3 (4, 38)

No.	Name	Count	Type	Full Name
1	144	2	Ligand/Ion	TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2	BU2	8	Ligand/Ion	1,3-BUTANEDIOL
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	GOL	12	Ligand/Ion	GLYCEROL
5	SO4	16	Ligand/Ion	SULFATE ION

Biological Unit 4 (0, 0)

No.	Name	Count	Type	Full Name
1	144	-1	Ligand/Ion	TRIS-HYDROXYMETHYL-METHYL-AMMONIUM
2	BU2	-1	Ligand/Ion	1,3-BUTANEDIOL
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	GOL	-1	Ligand/Ion	GLYCEROL
5	SO4	-1	Ligand/Ion	SULFATE ION

Sites (20, 20)

Asymmetric Unit (20, 20)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASN A:76 , ARG A:77 , LEU A:78 , GLY A:79 , HOH A:232 , HOH A:233 , HOH A:275 , HOH A:330 , HOH A:354 , HOH A:399 , HOH A:400	BINDING SITE FOR RESIDUE SO4 A 190
02	AC2	SOFTWARE	ASN B:76 , ARG B:77 , LEU B:78 , GLY B:79 , HOH B:220 , HOH B:308 , HOH B:339	BINDING SITE FOR RESIDUE SO4 B 190
03	AC3	SOFTWARE	LYS A:181 , ASN B:76 , GLY B:109 , SER B:111 , GLU B:112 , HOH B:211 , HOH B:241 , HOH B:349 , HOH B:377 , HOH B:421	BINDING SITE FOR RESIDUE SO4 B 191
04	AC4	SOFTWARE	LYS A:61 , HOH A:286 , HOH A:349 , HOH A:430 , ARG B:127 , HOH B:281	BINDING SITE FOR RESIDUE SO4 B 192
05	AC5	SOFTWARE	GLY A:175 , GLN A:177 , GLU A:178 , HOH A:393 , HOH A:402	BINDING SITE FOR RESIDUE SO4 A 191
06	AC6	SOFTWARE	ARG A:127 , SER A:158 , ALA A:159 , ARG A:160	BINDING SITE FOR RESIDUE SO4 A 193
07	AC7	SOFTWARE	ASN B:123 , ASN B:125 , HOH B:414	BINDING SITE FOR RESIDUE SO4 B 193
08	AC8	SOFTWARE	LYS B:61 , THR B:93 , LYS B:94	BINDING SITE FOR RESIDUE CL B 194
09	AC9	SOFTWARE	ASN B:123 , HOH B:322	BINDING SITE FOR RESIDUE CL B 195
10	BC1	SOFTWARE	SER A:111 , GLY A:142 , ARG A:143 , SER A:144 , GLU A:145 , ILE A:146 , HOH A:215 , HOH A:229 , HOH A:315 , HOH A:406	BINDING SITE FOR RESIDUE 144 A 194
11	BC2	SOFTWARE	GLY B:142 , GLY B:175 , ARG B:176 , GLN B:177 , GLU B:178 , HOH B:248	BINDING SITE FOR RESIDUE BU2 B 197
12	BC3	SOFTWARE	ARG B:25 , ASN B:26 , TYR B:27 , ARG B:28 , THR B:34 , PRO B:35 , LYS B:57 , HOH B:328 , HOH B:331	BINDING SITE FOR RESIDUE BU2 B 198
13	BC4	SOFTWARE	LYS A:74 , ASN A:75 , TYR A:110 , HOH A:236 , HOH A:438 , ARG B:176 , HOH B:352	BINDING SITE FOR RESIDUE BU2 A 195
14	BC5	SOFTWARE	GLU A:53 , ASN A:54 , GLY A:154 , HOH A:308 , HOH A:388 , HOH A:394	BINDING SITE FOR RESIDUE BU2 A 196
15	BC6	SOFTWARE	ARG B:28 , ASN B:32 , ASP B:60 , LYS B:61 , HOH B:337	BINDING SITE FOR RESIDUE GOL B 199
16	BC7	SOFTWARE	SER B:111 , TYR B:115 , GLY B:142 , ARG B:143 , SER B:144 , GLU B:145 , ILE B:146 , HOH B:264 , HOH B:394	BINDING SITE FOR RESIDUE GOL B 200
17	BC8	SOFTWARE	ARG A:33 , MET A:41 , HOH A:282 , HOH A:304 , HOH A:418 , HOH A:432 , ARG B:172 , ILE B:173	BINDING SITE FOR RESIDUE GOL A 197
18	BC9	SOFTWARE	HOH A:216 , LYS B:140 , TYR B:141 , PHE B:174 , ARG B:176 , HOH B:234 , HOH B:254 , HOH B:306 , HOH B:323 , HOH B:352	BINDING SITE FOR RESIDUE GOL B 201
19	CC1	SOFTWARE	LYS A:140 , TYR A:141 , PHE A:174 , HOH A:284 , HOH A:319 , HOH A:332 , HOH A:366 , HOH A:395 , HOH B:292	BINDING SITE FOR RESIDUE GOL A 198
20	CC2	SOFTWARE	LYS A:99 , TRP A:104 , ILE A:107 , TYR A:141 , HOH A:283 , HOH A:296 , HOH A:301 , HOH A:341 , HOH A:405 , HOH A:408 , ILE B:107 , HOH B:202	BINDING SITE FOR RESIDUE GOL A 199

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 8)

Asymmetric Unit (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANK_REP_REGION	PS50297	Ankyrin repeat region circular profile.	Y1425_THEVO	26-185	2	A:26-185 B:26-185
2	ANK_REPEAT	PS50088	Ankyrin repeat profile.	Y1425_THEVO	64-96 97-129 130-162	6	A:64-96 B:64-96 A:97-129 B:97-129 A:130-162 B:130-162

Biological Unit 1 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANK_REP_REGION	PS50297	Ankyrin repeat region circular profile.	Y1425_THEVO	26-185	1	A:26-185 -
2	ANK_REPEAT	PS50088	Ankyrin repeat profile.	Y1425_THEVO	64-96 97-129 130-162	3	A:64-96 - A:97-129 - A:130-162 -

Biological Unit 2 (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANK_REP_REGION	PS50297	Ankyrin repeat region circular profile.	Y1425_THEVO	26-185	1	- B:26-185
2	ANK_REPEAT	PS50088	Ankyrin repeat profile.	Y1425_THEVO	64-96 97-129 130-162	3	- B:64-96 - B:97-129 - B:130-162

Biological Unit 3 (2, 16)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANK_REP_REGION	PS50297	Ankyrin repeat region circular profile.	Y1425_THEVO	26-185	4	A:26-185 B:26-185
2	ANK_REPEAT	PS50088	Ankyrin repeat profile.	Y1425_THEVO	64-96 97-129 130-162	12	A:64-96 B:64-96 A:97-129 B:97-129 A:130-162 B:130-162

Biological Unit 4 (2, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	ANK_REP_REGION	PS50297	Ankyrin repeat region circular profile.	Y1425_THEVO	26-185	2	A:26-185 B:26-185
2	ANK_REPEAT	PS50088	Ankyrin repeat profile.	Y1425_THEVO	64-96 97-129 130-162	6	A:64-96 B:64-96 A:97-129 B:97-129 A:130-162 B:130-162

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:183
 aligned with Y1425_THEVO | Q978J0 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:183
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186   
          Y1425_THEVO     7 IVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 189
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh.hhhhhhhhhhhh...........hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) -------------------ANK_REP_REGION  PDB: A:26-185 UniProt: 26-185                                                                                                                   ---- PROSITE (1)
                PROSITE (2) ---------------------------------------------------------ANK_REPEAT  PDB: A:64-96         ANK_REPEAT  PDB: A:97-129        ANK_REPEAT  PDB: A:130-162       --------------------------- PROSITE (2)
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rfm A   7 IVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 189
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186

Chain B from PDB  Type:PROTEIN  Length:184
 aligned with Y1425_THEVO | Q978J0 from UniProtKB/Swiss-Prot  Length:189

    Alignment length:184
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185    
          Y1425_THEVO     6 EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 189
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhh.hhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhh.............hhhhhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --------------------ANK_REP_REGION  PDB: B:26-185 UniProt: 26-185                                                                                                                   ---- PROSITE (1)
                PROSITE (2) ----------------------------------------------------------ANK_REPEAT  PDB: B:64-96         ANK_REPEAT  PDB: B:97-129        ANK_REPEAT  PDB: B:130-162       --------------------------- PROSITE (2)
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2rfm B   6 EIVEKIKDEKSINQNLDFLRNYRDSYNRTPLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLLELGADISARDLTGLTAEASARIFGRQEVIKIFTEVRRA 189
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185

Legend:		→ Mismatch	(orange background)
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	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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Asymmetric Unit
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	Ligands, Modified Residues, Ions
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	Cis Peptide Bonds
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Biological Units
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		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]
		Biological Unit 4	[ Jena3D ]

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	2rfm
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	Y1425_THEVO \| Q978J0
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (5, 22)