2R17 - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   FUNCTIONAL ARCHITECTURE OF THE RETROMER CARGO-RECOGNITION COMPLEX

Authors :   A. Hierro, A. L. Rojas, R. Rojas, N. Murthy, G. Effantin, A. V. Kajava, A. J. S. Bonifacino, J. H. Hurley

Date :   22 Aug 07 (Deposition) - 30 Oct 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.80

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,C  (1x)
Biol. Unit 2: B,D  (1x)

Keywords :   Protein Transport, Membrane, Phosphorylation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Hierro, A. L. Rojas, R. Rojas, N. Murthy, G. Effantin, A. V. Kajava, A. C. Steven, J. S. Bonifacino, J. H. Hurley
Functional Architecture Of The Retromer Cargo-Recognition Complex.
Nature V. 449 1063 2007
PubMed-ID: 17891154 | Reference-DOI: 10.1038/NATURE06216

Molecule 1 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 29
	Chains	:	A, B
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Gene	:	VPS29
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	VESICLE PROTEIN SORTING 29, HVPS29, PEP11

Molecule 2 - VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 35
	Chains	:	C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Gene	:	VPS35, MEM3
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	VESICLE PROTEIN SORTING 35, HVPS35, MATERNAL-EMBRYONIC 3

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A		C
Biological Unit 2 (1x)	:		B		D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 18)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	16	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (1, 8)

No.	Name	Count	Type	Full Name
1	GOL	-1	Ligand/Ion	GLYCEROL
2	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 10)

No.	Name	Count	Type	Full Name
1	GOL	2	Ligand/Ion	GLYCEROL
2	MSE	8	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (2, 2)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA D:577 , GLU D:578 , LEU D:579	BINDING SITE FOR RESIDUE GOL D 1
2	AC2	SOFTWARE	HOH C:787 , ASN D:744	BINDING SITE FOR RESIDUE GOL D 2

(no "SS Bond" information available for 2R17)

Asymmetric Unit

No.	Residues
1	Ile A:11	-	Pro A:12
2	Ile A:91	-	Pro A:92
3	Ile B:11	-	Pro B:12
4	Ile B:91	-	Pro B:92

Asymmetric Unit (5, 9)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_066658	R	524	W	VPS35_HUMAN	Polymorphism	184277092	C/D	R	524	W
2	UniProt	VAR_054046	V	602	D	VPS35_HUMAN	Polymorphism	34687100	C/D	V	602	D
3	UniProt	VAR_066659	D	620	N	VPS35_HUMAN	Disease (PARK17)	188286943	C/D	D	620	N
4	UniProt	VAR_066660	A	737	V	VPS35_HUMAN	Polymorphism	749516404	C	A	737	V
5	UniProt	VAR_066661	L	774	M	VPS35_HUMAN	Polymorphism	192419029	C/D	L	774	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 1 (5, 5)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_066658	R	524	W	VPS35_HUMAN	Polymorphism	184277092	C	R	524	W
2	UniProt	VAR_054046	V	602	D	VPS35_HUMAN	Polymorphism	34687100	C	V	602	D
3	UniProt	VAR_066659	D	620	N	VPS35_HUMAN	Disease (PARK17)	188286943	C	D	620	N
4	UniProt	VAR_066660	A	737	V	VPS35_HUMAN	Polymorphism	749516404	C	A	737	V
5	UniProt	VAR_066661	L	774	M	VPS35_HUMAN	Polymorphism	192419029	C	L	774	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

Biological Unit 2 (4, 4)

								dbSNP	PDB
No.	Source	Variant ID	Variant			UniProt ID	Status	ID	Chain	Variant
1	UniProt	VAR_066658	R	524	W	VPS35_HUMAN	Polymorphism	184277092	D	R	524	W
2	UniProt	VAR_054046	V	602	D	VPS35_HUMAN	Polymorphism	34687100	D	V	602	D
3	UniProt	VAR_066659	D	620	N	VPS35_HUMAN	Disease (PARK17)	188286943	D	D	620	N
5	UniProt	VAR_066661	L	774	M	VPS35_HUMAN	Polymorphism	192419029	D	L	774	M

SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(no "PROSITE Motif" information available for 2R17)

Asymmetric Unit (6, 12)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1	ENST00000299138	1	ENSE00001370884	chr16:46723104-46723043	62	VPS35_HUMAN	1-1	1	0	-	-
1.2	ENST00000299138	2	ENSE00001203286	chr16:46717518-46717420	99	VPS35_HUMAN	2-34	33	0	-	-
1.3	ENST00000299138	3	ENSE00001300680	chr16:46716087-46715991	97	VPS35_HUMAN	35-67	33	0	-	-
1.4	ENST00000299138	4	ENSE00001301097	chr16:46715412-46715289	124	VPS35_HUMAN	67-108	42	0	-	-
1.5	ENST00000299138	5	ENSE00001324372	chr16:46714765-46714583	183	VPS35_HUMAN	108-169	62	0	-	-
1.6	ENST00000299138	6	ENSE00001304859	chr16:46713068-46712855	214	VPS35_HUMAN	169-240	72	0	-	-
1.7	ENST00000299138	7	ENSE00001328477	chr16:46711310-46711227	84	VPS35_HUMAN	241-268	28	0	-	-
1.8	ENST00000299138	8	ENSE00001308709	chr16:46710604-46710495	110	VPS35_HUMAN	269-305	37	0	-	-
1.9	ENST00000299138	9	ENSE00001322169	chr16:46708572-46708476	97	VPS35_HUMAN	305-337	33	0	-	-
1.10	ENST00000299138	10	ENSE00001303884	chr16:46708374-46708226	149	VPS35_HUMAN	338-387	50	0	-	-
1.11	ENST00000299138	11	ENSE00001325496	chr16:46706384-46706177	208	VPS35_HUMAN	387-456	70	0	-	-
1.12	ENST00000299138	12	ENSE00001307618	chr16:46705772-46705617	156	VPS35_HUMAN	457-508	52	2	C:483-508 D:484-508	26 25
1.13	ENST00000299138	13	ENSE00001316290	chr16:46702964-46702842	123	VPS35_HUMAN	509-549	41	2	C:509-549 D:509-549	41 41
1.14	ENST00000299138	14	ENSE00001299009	chr16:46697074-46696895	180	VPS35_HUMAN	550-609	60	2	C:550-609 D:550-609	60 60
1.15	ENST00000299138	15	ENSE00001320388	chr16:46696394-46696155	240	VPS35_HUMAN	610-689	80	2	C:610-689 D:610-678	80 69
1.16	ENST00000299138	16	ENSE00000945117	chr16:46695773-46695630	144	VPS35_HUMAN	690-737	48	2	C:690-737 D:695-733	48 39
1.17	ENST00000299138	17	ENSE00001324467	chr16:46694563-46691891	2673	VPS35_HUMAN	738-796	59	2	C:738-780 D:739-780	43 42

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:183
 aligned with VPS29_HUMAN | Q9UBQ0 from UniProtKB/Swiss-Prot  Length:182

    Alignment length:183
                             1                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179   
          VPS29_HUMAN     - -MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKP 182
               SCOP domains d2r17a_ A: Vacuolar protein sorting 29, VPS29                                                                                                                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee............hhhhhhhh......eeee.....hhhhhhhhhhhh..eee.............eeeeee..eeeeee.........hhhhhhhhhhhhh..eee.......eeeee..eeeee.................eeeeeee....eeeeeee......eeeeeee... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r17 A   0 mmLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDmASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLmDIQASTVVTYVYQLIGDDVKVERIEYKKP 182
                            ||       9        19        29        39        49        59        69        79        89      | 99       109       119       129       139       149   |   159       169       179   
                            ||                                                                                             96-MSE                                                  153-MSE                         
                            0-MSE                                                                                                                                                                                  
                             1-MSE

Chain B from PDB  Type:PROTEIN  Length:183
 aligned with VPS29_HUMAN | Q9UBQ0 from UniProtKB/Swiss-Prot  Length:182

    Alignment length:183
                             1                                                                                                                                                                                     
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179   
          VPS29_HUMAN     - -MLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDMASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLMDIQASTVVTYVYQLIGDDVKVERIEYKKP 182
               SCOP domains d2r17b_ B: Vacuolar protein sorting 29, VPS29                                                                                                                                           SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -Metallophos_2-2r17B01 B:1-158                                                                                                                                 ------------------------ Pfam domains (1)
           Pfam domains (2) -Metallophos_2-2r17B02 B:1-158                                                                                                                                 ------------------------ Pfam domains (2)
         Sec.struct. author .eeeeee............hhhhhhhh......eeee.....hhhhhhhhhhhh.eeee.............eeeeee..eeeeee.........hhhhhhhhhhhhh..eee.......eeeee..eeeee.................eeeeeee...eeeeeeeeee..eeeeeeeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2r17 B   0 mmLVLVLGDLHIPHRCNSLPAKFKKLLVPGKIQHILCTGNLCTKESYDYLKTLAGDVHIVRGDFDENLNYPEQKVVTVGQFKIGLIHGHQVIPWGDmASLALLQRQFDVDILISGHTHKFEAFEHENKFYINPGSATGAYNALETNIIPSFVLmDIQASTVVTYVYQLIGDDVKVERIEYKKP 182
                            ||       9        19        29        39        49        59        69        79        89      | 99       109       119       129       139       149   |   159       169       179   
                            0-MSE                                                                                          96-MSE                                                  153-MSE                         
                             1-MSE

Chain C from PDB  Type:PROTEIN  Length:298
 aligned with VPS35_HUMAN | Q96QK1 from UniProtKB/Swiss-Prot  Length:796

    Alignment length:298
                                   492       502       512       522       532       542       552       562       572       582       592       602       612       622       632       642       652       662       672       682       692       702       712       722       732       742       752       762       772        
          VPS35_HUMAN   483 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 780
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh............hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) -----------------------------------------W-----------------------------------------------------------------------------D-----------------N--------------------------------------------------------------------------------------------------------------------V------------------------------------M------ SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.12  PDB: C:483-508 Exon 1.13  PDB: C:509-549                Exon 1.14  PDB: C:550-609 UniProt: 550-609                  Exon 1.15  PDB: C:610-689 UniProt: 610-689                                      Exon 1.16  PDB: C:690-737 UniProt: 690-737      Exon 1.17  PDB: C:738-780 UniProt: 738-796  Transcript 1
                 2r17 C 483 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFmSQAFSLYEDEISDSKAQLAAITLIIGTFERmKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVmECLKKALKIANQCmDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 780
                                   492       502       512       522       532       542       552       562       572       582       592       602    |  612       622       632     | 642       652       662       672       682       692    |  702       712       722       732       742       752       762       772        
                                                                                                                                                      607-MSE                        638-MSE                                                    697-MSE       711-MSE

Chain D from PDB  Type:PROTEIN  Length:276
 aligned with VPS35_HUMAN | Q96QK1 from UniProtKB/Swiss-Prot  Length:796

    Alignment length:297
                                   493       503       513       523       533       543       553       563       573       583       593       603       613       623       633       643       653       663       673       683       693       703       713       723       733       743       753       763       773       
          VPS35_HUMAN   484 FADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMDPSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 780
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) Vps35-2r17D01 D:484-754                                                                                                                                                                                                                                                        -------------------------- Pfam domains (1)
           Pfam domains (2) Vps35-2r17D02 D:484-754                                                                                                                                                                                                                                                        -------------------------- Pfam domains (2)
         Sec.struct. author hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh----------------hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh.-----..hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------W-----------------------------------------------------------------------------D-----------------N---------------------------------------------------------------------------------------------------------------------------------------------------------M------ SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
               Transcript 1 Exon 1.12  PDB: D:484-508Exon 1.13  PDB: D:509-549                Exon 1.14  PDB: D:550-609 UniProt: 550-609                  Exon 1.15  PDB: D:610-678 UniProt: 610-689 [INCOMPLETE]                         Exon 1.16  PDB: D:695-733 UniProt: 690-737      Exon 1.17  PDB: D:739-780 UniProt: 738-796  Transcript 1
                 2r17 D 484 FADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFmSQAFSLYEDEISDSKAQLAAITLIIGTFERmKCFSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFW----------------RVmECLKKALKIANQCmDPSLQVQLFIEILNRYIYFYEK-----TIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR 780
                                   493       503       513       523       533       543       553       563       573       583       593       603   |   613       623       633    |  643       653       663       673    |    -         - | |   703       713       723       733     | 743       753       763       773       
                                                                                                                                                     607-MSE                        638-MSE                                 678              695 |           711-MSE               733   739                                         
                                                                                                                                                                                                                                               697-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a+b) (23004)

Fold: Metallo-dependent phosphatases (115)

Superfamily: Metallo-dependent phosphatases (115)

Family: YfcE-like (12)

Protein domain: Vacuolar protein sorting 29, VPS29 (6)

Human (Homo sapiens) [TaxId: 9606] (2)

1a	d2r17a_	A:
1b	d2r17b_	B:

(no "CATH Domain" information available for 2R17)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Calcineurin (56)

Family: Metallophos_2 (10)

Homo sapiens (Human) (2)

1a	Metallophos_2-2r17B01	B:1-158
1b	Metallophos_2-2r17B02	B:1-158

Clan: no clan defined [family: Vps35] (1)

Family: Vps35 (1)

Homo sapiens (Human) (1)

2a	Vps35-2r17D01	D:484-754
2b	Vps35-2r17D02	D:484-754

Asymmetric Unit(hide GO term definitions)

Chain A,B (VPS29_HUMAN | Q9UBQ0)

molecular function
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008565	protein transporter activity	Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
	GO:0016055	Wnt signaling pathway	The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
	GO:0006886	intracellular protein transport	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0042147	retrograde transport, endosome to Golgi	The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
	GO:1990126	retrograde transport, endosome to plasma membrane	The directed movement of membrane-bounded vesicles from endosomes back to the plasma membrane, a trafficking pathway that promotes the recycling of internalized transmembrane proteins.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005769	early endosome	A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0010008	endosome membrane	The lipid bilayer surrounding an endosome.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0043231	intracellular membrane-bounded organelle	Organized structure of distinctive morphology and function, bounded by a single or double lipid bilayer membrane and occurring within the cell. Includes the nucleus, mitochondria, plastids, vacuoles, and vesicles. Excludes the plasma membrane.
	GO:0005770	late endosome	A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030904	retromer complex	A conserved hetero-pentameric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. The budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p. The mammalian complex shows slight variation in composition compared to yeast, and comprises SNX1 or SNX2, SNX5 or SNX6, VPS26A or VPS26B, VPS29, and VPS35.
	GO:0030906	retromer, cargo-selective complex	The trimeric subcomplex of the retromer, believed to be closely associated with the membrane. This trimeric complex is responsible for recognizing and binding to cargo molecules. The complex comprises three Vps proteins in both yeast and mammalian cells: Vps35p, Vps29p, and Vps26p in yeast, and VPS35, VPS29 and VPS26A or VPS26B in mammals.

Chain C,D (VPS35_HUMAN | Q96QK1)

molecular function
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0008565	protein transporter activity	Enables the directed movement of proteins into, out of or within a cell, or between cells.
biological process
	GO:0016055	Wnt signaling pathway	The series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell and ending with a change in cell state.
	GO:0006886	intracellular protein transport	The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
	GO:1902823	negative regulation of late endosome to lysosome transport	Any process that stops, prevents or reduces the frequency, rate or extent of late endosome to lysosome transport.
	GO:0061357	positive regulation of Wnt protein secretion	Any process that activates or increases the frequency, rate or extent of the controlled release of a Wnt protein from a cell.
	GO:0090263	positive regulation of canonical Wnt signaling pathway	Any process that increases the rate, frequency, or extent of the Wnt signaling pathway through beta-catenin, the series of molecular signals initiated by binding of a Wnt protein to a frizzled family receptor on the surface of the target cell, followed by propagation of the signal via beta-catenin, and ending with a change in transcription of target genes.
	GO:0015031	protein transport	The directed movement of proteins into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
	GO:0016241	regulation of macroautophagy	Any process that modulates the frequency, rate or extent of macroautophagy.
	GO:0031647	regulation of protein stability	Any process that affects the structure and integrity of a protein, altering the likelihood of its degradation or aggregation.
	GO:0042147	retrograde transport, endosome to Golgi	The directed movement of membrane-bounded vesicles from endosomes back to the trans-Golgi network where they are recycled for further rounds of transport.
	GO:1990126	retrograde transport, endosome to plasma membrane	The directed movement of membrane-bounded vesicles from endosomes back to the plasma membrane, a trafficking pathway that promotes the recycling of internalized transmembrane proteins.
	GO:0045056	transcytosis	The directed movement of endocytosed material through the cell and its exocytosis from the plasma membrane at the opposite side.
	GO:0006810	transport	The directed movement of substances (such as macromolecules, small molecules, ions) or cellular components (such as complexes and organelles) into, out of or within a cell, or between cells, or within a multicellular organism by means of some agent such as a transporter, pore or motor protein.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0005829	cytosol	The part of the cytoplasm that does not contain organelles but which does contain other particulate matter, such as protein complexes.
	GO:0005769	early endosome	A membrane-bounded organelle that receives incoming material from primary endocytic vesicles that have been generated by clathrin-dependent and clathrin-independent endocytosis; vesicles fuse with the early endosome to deliver cargo for sorting into recycling or degradation pathways.
	GO:0005768	endosome	A vacuole to which materials ingested by endocytosis are delivered.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0005770	late endosome	A prelysosomal endocytic organelle differentiated from early endosomes by lower lumenal pH and different protein composition. Late endosomes are more spherical than early endosomes and are mostly juxtanuclear, being concentrated near the microtubule organizing center.
	GO:0005765	lysosomal membrane	The lipid bilayer surrounding the lysosome and separating its contents from the cell cytoplasm.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0030904	retromer complex	A conserved hetero-pentameric membrane-associated complex involved in retrograde transport from endosomes to the Golgi apparatus. The budding yeast retromer comprises Vps35p, Vps29p, Vps26p, Vps5p, and Vps17p. The mammalian complex shows slight variation in composition compared to yeast, and comprises SNX1 or SNX2, SNX5 or SNX6, VPS26A or VPS26B, VPS29, and VPS35.
	GO:0030906	retromer, cargo-selective complex	The trimeric subcomplex of the retromer, believed to be closely associated with the membrane. This trimeric complex is responsible for recognizing and binding to cargo molecules. The complex comprises three Vps proteins in both yeast and mammalian cells: Vps35p, Vps29p, and Vps26p in yeast, and VPS35, VPS29 and VPS26A or VPS26B in mammals.
	GO:0097422	tubular endosome	A network of fine tubules in the vicinity of the Golgi complex and around the centriole.

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	2r17
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	VPS29_HUMAN \| Q9UBQ0
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	VPS35_HUMAN \| Q96QK1
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	VPS29_HUMAN \| Q9UBQ0	:	1w24 5gtu
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(no "Related Entries Specified in the PDB File" available for 2R17)

Description

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Ligands, Modified Residues, Ions (2, 18)

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