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2R17
Biol. Unit 2
Info
Asym.Unit (162 KB)
Biol.Unit 1 (82 KB)
Biol.Unit 2 (78 KB)
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(1)
Title
:
FUNCTIONAL ARCHITECTURE OF THE RETROMER CARGO-RECOGNITION COMPLEX
Authors
:
A. Hierro, A. L. Rojas, R. Rojas, N. Murthy, G. Effantin, A. V. Kajava, A. J. S. Bonifacino, J. H. Hurley
Date
:
22 Aug 07 (Deposition) - 30 Oct 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Protein Transport, Membrane, Phosphorylation
(Keyword Search:
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Gene Ontology, PubMed, Web (Google)
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Reference
:
A. Hierro, A. L. Rojas, R. Rojas, N. Murthy, G. Effantin, A. V. Kajava, A. C. Steven, J. S. Bonifacino, J. H. Hurley
Functional Architecture Of The Retromer Cargo-Recognition Complex.
Nature V. 449 1063 2007
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: SELENOMETHIONINE (MSEa)
2b: SELENOMETHIONINE (MSEb)
2c: SELENOMETHIONINE (MSEc)
2d: SELENOMETHIONINE (MSEd)
2e: SELENOMETHIONINE (MSEe)
2f: SELENOMETHIONINE (MSEf)
2g: SELENOMETHIONINE (MSEg)
2h: SELENOMETHIONINE (MSEh)
2i: SELENOMETHIONINE (MSEi)
2j: SELENOMETHIONINE (MSEj)
2k: SELENOMETHIONINE (MSEk)
2l: SELENOMETHIONINE (MSEl)
2m: SELENOMETHIONINE (MSEm)
2n: SELENOMETHIONINE (MSEn)
2o: SELENOMETHIONINE (MSEo)
2p: SELENOMETHIONINE (MSEp)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
MSE
8
Mod. Amino Acid
SELENOMETHIONINE
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ALA D:577 , GLU D:578 , LEU D:579
BINDING SITE FOR RESIDUE GOL D 1
2
AC2
SOFTWARE
HOH C:787 , ASN D:744
BINDING SITE FOR RESIDUE GOL D 2
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SAPs(SNPs)/Variants
(4, 4)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_066658 (R524W, chain D, )
2: VAR_054046 (V602D, chain D, )
3: VAR_066659 (D620N, chain D, )
4: VAR_066661 (L774M, chain D, )
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dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_066658
R
524
W
VPS35_HUMAN
Unclassified
---
D
R
524
W
2
UniProt
VAR_054046
V
602
D
VPS35_HUMAN
Polymorphism
34687100
D
V
602
D
3
UniProt
VAR_066659
D
620
N
VPS35_HUMAN
Disease (PARK17)
---
D
D
620
N
5
UniProt
VAR_066661
L
774
M
VPS35_HUMAN
Polymorphism
---
D
L
774
M
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(, 0)
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Exons
(0, 0)
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2r17a_ (A:)
1b: SCOP_d2r17b_ (B:)
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)
Protein Domains
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(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
Metallo-dependent phosphatases
(115)
Superfamily
:
Metallo-dependent phosphatases
(115)
Family
:
YfcE-like
(12)
Protein domain
:
Vacuolar protein sorting 29, VPS29
(6)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d2r17a_
A:
1b
d2r17b_
B:
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(2, 4)
Info
all PFAM domains
1a: PFAM_Metallophos_2_2r17B01 (B:1-158)
1b: PFAM_Metallophos_2_2r17B02 (B:1-158)
2a: PFAM_Vps35_2r17D01 (D:484-754)
2b: PFAM_Vps35_2r17D02 (D:484-754)
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Clans
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Families
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)
Organisms
(
)
(
)
Clan
:
Calcineurin
(56)
Family
:
Metallophos_2
(10)
Homo sapiens (Human)
(2)
1a
Metallophos_2-2r17B01
B:1-158
1b
Metallophos_2-2r17B02
B:1-158
Clan
:
no clan defined [family: Vps35]
(1)
Family
:
Vps35
(1)
Homo sapiens (Human)
(1)
2a
Vps35-2r17D01
D:484-754
2b
Vps35-2r17D02
D:484-754
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Chain D
Asymmetric Unit 1
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Show PDB file:
Asym.Unit (162 KB)
Header - Asym.Unit
Biol.Unit 1 (82 KB)
Header - Biol.Unit 1
Biol.Unit 2 (78 KB)
Header - Biol.Unit 2
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