Show PDB file:   
         Plain Text   HTML   (compressed file size)
QuickSearch:   
by PDB,NDB,UniProt,PROSITE Code or Search Term(s)  
(-)Asym.Unit - manually
(-)Asymmetric Unit
(-)Biological Unit 1
(-)Biological Unit 2
collapse expand < >
Image Asym.Unit - manually
Asym.Unit - manually  (Jmol Viewer)
Image Asymmetric Unit
Asymmetric Unit  (Jmol Viewer)
Image Biological Unit 1
Biological Unit 1  (Jmol Viewer)
Image Biological Unit 2
Biological Unit 2  (Jmol Viewer)

(-) Description

Title :  STRUCTURE OF V267F MUTANT HPRK/P
 
Authors :  V. Chaptal, Vincent F. , V. Gueguen-Chaignon, S. Poncet, J. Deutscher, S. Nessler, S. Morera
Date :  16 Jul 07  (Deposition) - 18 Sep 07  (Release) - 24 Feb 09  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D,E,F,G,H,I,J,K,L
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  G,H,I,J,K,L  (1x)
Keywords :  V267F Mutation, Atp-Binding, Carbohydrate Metabolism, Kinase, Magnesium, Metal-Binding, Multifunctional Enzyme, Nucleotide-Binding, Serine/Threonine-Protein Kinase, Transferase, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  V. Chaptal, F. Vincent, V. Gueguen-Chaignon, V. Monedero, S. Poncet, J. Deutscher, S. Nessler, S. Morera
Structural Analysis Of The Bacterial Hpr Kinase/Phosphorylase V267F Mutant Gives Insights Into The Allosteric Regulation Mechanism Of This Bifunctional Enzyme.
J. Biol. Chem. V. 282 34952 2007
PubMed-ID: 17878158  |  Reference-DOI: 10.1074/JBC.M705979200
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HPR KINASE/PHOSPHORYLASE
    Chains: A, B, C, D, E, F, G, H, I, J, K, L
    EC Number: 2.7.11.-, 2.7.4.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PQE30
    Expression System Strain: M15
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Fragment: C-TERMINAL DOMAIN (128-319)
    Gene: HPRK
    Mutation: YES
    Organism Scientific: LACTOBACILLUS CASEI
    Organism Taxid: 1582
    Synonym: HPRK/P, HPRSER, KINASE/PHOSPHORYLASE, HPR KINASE/PHOSPHATASE

 Structural Features

(-) Chains, Units

  123456789101112
Asymmetric Unit : ABCDEFGHIJKL
Biological Unit 1 (1x): ABCDEF      
Biological Unit 2 (1x):       GHIJKL

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2QMH)

(-) Sites  (0, 0)

(no "Site" information available for 2QMH)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QMH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QMH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QMH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QMH)

(-) Exons   (0, 0)

(no "Exon" information available for 2QMH)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:161
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:174
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304    
           HPRK_LACCA   135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
               SCOP domains d2qmha_ A: HPr kinase HprK C-terminal domain                                                                                                                                   SCOP domains
               CATH domains 2qmhA00 A:135-308 P-loop containing nucleotide triphosphate hydrolases                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee.eeeee..eeeeee......hhhhhhhhhh...eeee..eeeeee.....eeee.......eeee...eeeehhhhhh...........eeeee.-------------.eeeee....eeeeeee......hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qmh A 135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLE-------------GEQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
                                   144       154       164       174       184       194       204       214       224       234|        -    |  254       264       274       284       294       304    
                                                                                                                              235           249                                                           


Chain B from PDB  Type:PROTEIN  Length:181
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:181
                                   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 
           HPRK_LACCA   132 QLAERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEETD 312
               SCOP domains d2qmhb_ B: HPr kinase HprK C-terminal domain                                                                                                                                          SCOP domains
               CATH domains 2qmhB00 B:132-312 P-loop containing nucleotide triphosphate hydrolases                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.eeeee..eeeeee.....hhhhhhhhhhhh..eeee..eeeeee.....eeee.hhhhh.eeee...eeeehhhhhhhhhh..eee..eeeeeee...............eeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmh B 132 QLAERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEETD 312
                                   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 


Chain C from PDB  Type:PROTEIN  Length:164
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:173
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305   
           HPRK_LACCA   136 RRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
               SCOP domains d2qmhc_ C: HPr kinase HprK C-terminal domain                                                                                                                                  SCOP domains
               CATH domains 2qmhC00 C:136-308 P-loop containing nucleotide triphosphate hydrolases                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..eeeeee.....hhhhhhhhhhhh..eeeee...eeee.....eeee.......eeee...eeeehhhhhhhhhh..eeeeeeeeeee....---------..eeee....eeeeeeee.....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmh C 136 RRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTP---------GEQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
                                   145       155       165       175       185       195       205       215       225       235   |     -   |   255       265       275       285       295       305   
                                                                                                                                 239       249                                                           


Chain D from PDB  Type:PROTEIN  Length:181
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:181
                                   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 
           HPRK_LACCA   132 QLAERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEETD 312
               SCOP domains d2qmhd_ D: HPr kinase HprK C-terminal domain                                                                                                                                          SCOP domains
               CATH domains 2qmhD00 D:132-312 P-loop containing nucleotide triphosphate hydrolases                                                                                                                CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee.eeeee..eeeeeee....hhhhhhhhhhhh..eeee..eeeeeeee..eeeee.hhhhh.eeee...eeeehhhhhhhhhh..eee..eeeeeee...............eeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmh D 132 QLAERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEETD 312
                                   141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311 


Chain E from PDB  Type:PROTEIN  Length:164
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:175
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304     
           HPRK_LACCA   135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNE 309
               SCOP domains d2qmhe_ E: HPr kinase HprK C-terminal domain                                                                                                                                    SCOP domains
               CATH domains 2qmhE00 E:135-309 P-loop containing nucleotide triphosphate hydrolases                                                                                                          CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee.eeeee..eeeeee.....hhhhhhhhhhhh..eeee..eeeeeeee..eeeee.......eeee...eeeehhhhhh......eeee.eeeeee.-----------......ee..ee..eeeee.....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmh E 135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLEN-----------SGEQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNE 309
                                   144       154       164       174       184       194       204       214       224       234 |       -   |   254       264       274       284       294       304     
                                                                                                                               236         248                                                             


Chain F from PDB  Type:PROTEIN  Length:160
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:173
                                   146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306   
           HPRK_LACCA   137 RSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNE 309
               SCOP domains d2qmhf_ F: HPr kinase HprK C-terminal domain                                                                                                                                  SCOP domains
               CATH domains 2qmhF00 F:137-309 P-loop containing nucleotide triphosphate hydrolases                                                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..eeeee......hhhhhhhhhhhh..eeeee...eeee.....eeee.......eeee...eeeehhhhhhhhhh..eeeeeeeeee..-------------..eeee..eeeeeeee......hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmh F 137 RSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLEN-------------EQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNE 309
                                   146       156       166       176       186       196       206       216       226       236         -   |   256       266       276       286       296       306   
                                                                                                                             236           250                                                           


Chain G from PDB  Type:PROTEIN  Length:160
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:174
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304    
           HPRK_LACCA   135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
               SCOP domains d2qmhg_ G: HPr kinase HprK C-terminal domain                                                                                                                                   SCOP domains
               CATH domains 2qmhG00 G:135-308 P-loop containing nucleotide triphosphate hydrolases                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee.eeeee..eeeeee......hhhhhhhhhhh..eeee..eeeeeeee..eeeee.......eeee...eeeehhhhhh......eeee.eeee..--------------..eee....eeeeee.......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qmh G 135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLE--------------EQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
                                   144       154       164       174       184       194       204       214       224       234|        -     | 254       264       274       284       294       304    
                                                                                                                              235            250                                                          


Chain H from PDB  Type:PROTEIN  Length:178
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:178
                                   143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303        
           HPRK_LACCA   134 AERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEET 311
               SCOP domains d2qmhh_ H: HPr kinase HprK C-terminal domain                                                                                                                                       SCOP domains
               CATH domains 2qmhH00 H:134-311 P-loop containing nucleotide triphosphate hydrolases                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee.eeeee..eeeeee.....hhhhhhhhhhh...eeee..eeeeeeee..eeeee.hhhhh.eee.....eeehhhhhhhhhh..eee..eeeeeee...............eeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmh H 134 AERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEET 311
                                   143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303        


Chain I from PDB  Type:PROTEIN  Length:160
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:174
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304    
           HPRK_LACCA   135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
               SCOP domains d2qmhi_ I: HPr kinase HprK C-terminal domain                                                                                                                                   SCOP domains
               CATH domains 2qmhI00 I:135-308 P-loop containing nucleotide triphosphate hydrolases                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......eeeee..eeeee......hhhhhhhhhhhh..eeeee...eeee.....eeee.......eeee...eeeehhhhhhhhhh..eee..eeeee.--------------............eeee......hhhhhhhhhhhhhhhhh....hhhhhhhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qmh I 135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLE--------------EQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
                                   144       154       164       174       184       194       204       214       224       234|        -     | 254       264       274       284       294       304    
                                                                                                                              235            250                                                          


Chain J from PDB  Type:PROTEIN  Length:178
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:178
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304        
           HPRK_LACCA   135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEETD 312
               SCOP domains d2qmhj_ J: HPr kinase HprK C-terminal domain                                                                                                                                       SCOP domains
               CATH domains 2qmhJ00 J:135-312 P-loop containing nucleotide triphosphate hydrolases                                                                                                             CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.eeeee..eeeeee.....hhhhhhhhhhh...eeee..eeeeeeee..eeeee.hhhhh.eeee...eeeehhhhhhhhhh..eee..eeeeeee...............eeee..eeeeeeeeee....hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qmh J 135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNEETD 312
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304        


Chain K from PDB  Type:PROTEIN  Length:162
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:174
                                   144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304    
           HPRK_LACCA   135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
               SCOP domains d2qmhk_ K: HPr kinase HprK C-terminal domain                                                                                                                                   SCOP domains
               CATH domains 2qmhK00 K:135-308 P-loop containing nucleotide triphosphate hydrolases                                                                                                         CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....ee.eeeee..eeeeee......hhhhhhhhhhh..eeee..eeeeeeee..eeeee.......eeee...eeeehhhhhh......eee..eeee...------------..eeeee..eeeeeee.......hhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qmh K 135 ERRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLEN------------GEQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHN 308
                                   144       154       164       174       184       194       204       214       224       234 |       -    |  254       264       274       284       294       304    
                                                                                                                               236          249                                                           


Chain L from PDB  Type:PROTEIN  Length:161
 aligned with HPRK_LACCA | Q9RE09 from UniProtKB/Swiss-Prot  Length:319

    Alignment length:174
                                   145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305    
           HPRK_LACCA   136 RRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLENWTPDKTFDRLGSGEQTQLIFDVPVPKITVPVKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNE 309
               SCOP domains d2qmhl_ L: HPr kinase HprK C-terminal domain                                                                                                                                   SCOP domains
               CATH domains 2qmhL00 L:136-309 P-loop containing nucleotide triphosphate hydrolases                                                                                                         CATH domains
           Pfam domains (1) Hpr_kinase_C-2qmhL01 L:136-301                                                                                                                                        -------- Pfam domains (1)
           Pfam domains (2) Hpr_kinase_C-2qmhL02 L:136-301                                                                                                                                        -------- Pfam domains (2)
           Pfam domains (3) Hpr_kinase_C-2qmhL03 L:136-301                                                                                                                                        -------- Pfam domains (3)
           Pfam domains (4) Hpr_kinase_C-2qmhL04 L:136-301                                                                                                                                        -------- Pfam domains (4)
           Pfam domains (5) Hpr_kinase_C-2qmhL05 L:136-301                                                                                                                                        -------- Pfam domains (5)
           Pfam domains (6) Hpr_kinase_C-2qmhL06 L:136-301                                                                                                                                        -------- Pfam domains (6)
           Pfam domains (7) Hpr_kinase_C-2qmhL07 L:136-301                                                                                                                                        -------- Pfam domains (7)
           Pfam domains (8) Hpr_kinase_C-2qmhL08 L:136-301                                                                                                                                        -------- Pfam domains (8)
           Pfam domains (9) Hpr_kinase_C-2qmhL09 L:136-301                                                                                                                                        -------- Pfam domains (9)
          Pfam domains (10) Hpr_kinase_C-2qmhL10 L:136-301                                                                                                                                        -------- Pfam domains (10)
          Pfam domains (11) Hpr_kinase_C-2qmhL11 L:136-301                                                                                                                                        -------- Pfam domains (11)
          Pfam domains (12) Hpr_kinase_C-2qmhL12 L:136-301                                                                                                                                        -------- Pfam domains (12)
         Sec.struct. author ...ee.eeeee..eeeeee.....hhhhhhhhhhhh..eeee..eeeeee.....eeee.......eeee...eeeehhhhhhhhhh..eeee.eeeeee.-------------...eee..eee.eeeee.....hhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qmh L 136 RRSMHGVLVDIYGLGVLITGDSGVGKSETALELVQRGHRLIADDRVDVYQQDEQTIVGAAPPILSHLLEIRGLGIIDVMNLFGAGAVREDTTISLIVHLEN-------------EQTQLIFDVPVPKITVPFKVGRNLAIIIEVAAMNFRAKSMGYDATKTFEKNLNHLIEHNE 309
                                   145       155       165       175       185       195       205       215       225       235|        -    |  255       265       275       285       295       305    
                                                                                                                              236           250
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)

(-) CATH Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Architecture: 3-Layer(aba) Sandwich (12045)
(-)
Topology: Rossmann fold (7312)
(-)
Homologous Superfamily: P-loop containing nucleotide triphosphate hydrolases (1378)
(-)
Lactobacillus casei. Organism_taxid: 1582. (4)
1a2qmhB00B:132-312
1b2qmhD00D:132-312
1c2qmhG00G:135-308
1d2qmhI00I:135-308
1e2qmhH00H:134-311
1f2qmhJ00J:135-312
1g2qmhC00C:136-308
1h2qmhE00E:135-309
1i2qmhK00K:135-308
1j2qmhA00A:135-308
1k2qmhL00L:136-309
1l2qmhF00F:137-309

(-) Pfam Domains  (1, 12)

Asymmetric Unit
(-)
Clan: PEP-carboxyk (36)

(-) Gene Ontology  (19, 19)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F,G,H,I,J,K,L   (HPRK_LACCA | Q9RE09)
molecular function
    GO:0005524    ATP binding    Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016301    kinase activity    Catalysis of the transfer of a phosphate group, usually from ATP, to a substrate molecule.
    GO:0000287    magnesium ion binding    Interacting selectively and non-covalently with magnesium (Mg) ions.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
    GO:0000155    phosphorelay sensor kinase activity    Catalysis of the phosphorylation of a histidine residue in response to detection of an extracellular signal such as a chemical ligand or change in environment, to initiate a change in cell state or activity. The two-component sensor is a histidine kinase that autophosphorylates a histidine residue in its active site. The phosphate is then transferred to an aspartate residue in a downstream response regulator, to trigger a response.
    GO:0004672    protein kinase activity    Catalysis of the phosphorylation of an amino acid residue in a protein, usually according to the reaction: a protein + ATP = a phosphoprotein + ADP.
    GO:0004674    protein serine/threonine kinase activity    Catalysis of the reactions: ATP + protein serine = ADP + protein serine phosphate, and ATP + protein threonine = ADP + protein threonine phosphate.
    GO:0004712    protein serine/threonine/tyrosine kinase activity    Catalysis of the reactions: ATP + a protein serine = ADP + protein serine phosphate; ATP + a protein threonine = ADP + protein threonine phosphate; and ATP + a protein tyrosine = ADP + protein tyrosine phosphate.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0005975    carbohydrate metabolic process    The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
    GO:0008152    metabolic process    The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
    GO:0000160    phosphorelay signal transduction system    A conserved series of molecular signals found in prokaryotes and eukaryotes; involves autophosphorylation of a histidine kinase and the transfer of the phosphate group to an aspartate that then acts as a phospho-donor to response regulator proteins.
    GO:0016310    phosphorylation    The process of introducing a phosphate group into a molecule, usually with the formation of a phosphoric ester, a phosphoric anhydride or a phosphoric amide.
    GO:0006468    protein phosphorylation    The process of introducing a phosphate group on to a protein.
    GO:0006109    regulation of carbohydrate metabolic process    Any process that modulates the frequency, rate or extent of the chemical reactions and pathways involving carbohydrates.
    GO:0023014    signal transduction by protein phosphorylation    A process in which the transfer of one or more phosphate groups to a substrate transmits a signal to the phosphorylated substrate.
cellular component
    GO:0005622    intracellular    The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

 Visualization

(-) Interactive Views

Asymmetric Unit
  Complete Structure
    Jena3D(integrated viewing of ligand, site, SAP, PROSITE, SCOP information)
    WebMol | AstexViewer[tm]@PDBe
(Java Applets, require no local installation except for Java; loading may be slow)
    STRAP
(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    RasMol
(require local installation)
    Molscript (VRML)
(requires installation of a VRML viewer; select preferred view via VRML and generate a mono or stereo PDF format file)
 
  Ligands, Modified Residues, Ions
(no "Ligands, Modified Residues, Ions" information available for 2qmh)
 
  Sites
(no "Sites" information available for 2qmh)
 
  Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2qmh)
 
Biological Units
  Complete Structure
    Biological Unit 1  [ Jena3D ]
    Biological Unit 2  [ Jena3D ]

(-) Still Images

Jmol
  protein: cartoon or spacefill or dots and stick; nucleic acid: cartoon and stick; ligands: spacefill; active site: stick
[ Asym. Unit PNG format | Biol. Unit 1 PNG format | Biol. Unit 2 PNG format ](automatic orientation, automatically generated)
Molscript
  protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick
[ mono PDF format | stereo PDF format ](default orientation, automatically generated)

 Databases and Analysis Tools

(-) Databases

Access by PDB/NDB ID
  2qmh
    Family and Domain Information: ProDom | SYSTERS
    General Structural Information: GlycoscienceDB | MMDB | NDB | OCA | PDB | PDBe | PDBj | PDBsum | PDBWiki | PQS | PROTEOPEDIA
    Orientation in Membranes: OPM
    Protein Surface: SURFACE
    Secondary Structure: DSSP (structure derived) | HSSP (homology derived)
    Structural Genomics: GeneCensus
    Structural Neighbours: CE | VAST
    Structure Classification: CATH | Dali | SCOP
    Validation and Original Data: BMRB Data View | BMRB Restraints Grid | EDS | PROCHECK | RECOORD | WHAT_CHECK
 
Access by UniProt ID/Accession number
  HPRK_LACCA | Q9RE09
    Comparative Protein Structure Models: ModBase
    Genomic Information: Ensembl
    Protein-protein Interaction: DIP
    Sequence, Family and Domain Information: InterPro | Pfam | SMART | UniProtKB/SwissProt
 
Access by Enzyme Classificator   (EC Number)
  2.7.11.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
  2.7.4.-
    General Enzyme Information: BRENDA | EC-PDB | Enzyme | IntEnz
    Pathway: KEGG | MetaCyc
 
Access by Disease Identifier   (MIM ID)
  (no 'MIM ID' available)
    Disease Information: OMIM
 
Access by GenAge ID
  (no 'GenAge ID' available)
    Age Related Information: GenAge

(-) Analysis Tools

Access by PDB/NDB ID
    Domain Information: XDom
    Interatomic Contacts of Structural Units: CSU
    Ligand-protein Contacts: LPC
    Protein Cavities: castP
    Sequence and Secondary Structure: PDBCartoon
    Structure Alignment: STRAP(Java WebStart application, automatic local installation, requires Java; full application with system access!)
    Structure and Sequence Browser: STING
 
Access by UniProt ID/Accession number
  HPRK_LACCA | Q9RE09
    Protein Disorder Prediction: DisEMBL | FoldIndex | GLOBPLOT (for more information see DisProt)

 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        HPRK_LACCA | Q9RE09: 1jb1 1kkl 1kkm

(-) Related Entries Specified in the PDB File

1jb1 STRUCTURE OF WILD TYPE HPRK/P
1kkl STRUCTURE OF HPRK/P-HPR
1kkm STRUCTURE OF HPRK/P-SER46-P-HPR