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(-) Description

Title :  CRYSTAL STRUCTURE OF UNKNOWN FUNCTION PROTEIN VPA0580
 
Authors :  C. Chang, Y. Kim, L. Volkart, J. Abdullah, A. Joachimiak, Midwest Cent Structural Genomics (Mcsg)
Date :  02 Jul 07  (Deposition) - 17 Jul 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.76
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Vibrio Parahaemolyticus, Unknown Function Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  C. Chang, Y. Kim, L. Volkart, J. Abdullah, A. Joachimiak
Crystal Structure Of Unknown Function Protein Vpa0580.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNKNOWN FUNCTION PROTEIN VPA0580
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG
    Expression System Strain: BL21(DE3) DERIVATIVE
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: VPA0580
    Organism Scientific: VIBRIO PARAHAEMOLYTICUS
    Organism Taxid: 223926
    Strain: RIMD 2210633

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 20)

Asymmetric/Biological Unit (3, 20)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2MLY10Mod. Amino AcidN-DIMETHYL-LYSINE
3MSE9Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE B:84 , HIS B:92 , HIS B:98 , HOH B:254BINDING SITE FOR RESIDUE ACT B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2QHQ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2QHQ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2QHQ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2QHQ)

(-) Exons   (0, 0)

(no "Exon" information available for 2QHQ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:120
 aligned with Q87IM6_VIBPA | Q87IM6 from UniProtKB/TrEMBL  Length:122

    Alignment length:120
                                    12        22        32        42        52        62        72        82        92       102       112       122
         Q87IM6_VIBPA     3 LGFGMKMELQQFLDALASSPEKIEFETTMAVIEDNYDFTPAAFTNGNTQNDANENNGSCKIFAFGLLNALDKEATLACFGRFYREDVLLHPENNDHQNIRNFMVTGWEGIQFETSALTAK 122
               SCOP domains ------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2qhqA00 A:3-121 vpa0580 domain like                                                                                    - CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhhheee....eee..eee....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhh...eee....eee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------ Transcript
                 2qhq A   3 LGFGmkmELQQFLDALASSPEkIEFETTmAVIEDNYDFTPAAFTNGNTQNDANENNGSCkIFAFGLLNALDkEATLACFGRFYREDVLLHPENNDHQNIRNFmVTGWEGIQFETSALTAk 122
                                ||| 12        22 |      32        42        52        62        72 |      82        92       102  |    112       122
                                |||             24-MLY 31-MSE                         62-MLY      74-MLY                        105-MSE          122-MLY
                                7-MSE                                                                                                               
                                 8-MLY                                                                                                              
                                  9-MSE                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:122
 aligned with Q87IM6_VIBPA | Q87IM6 from UniProtKB/TrEMBL  Length:122

    Alignment length:122
                                    10        20        30        40        50        60        70        80        90       100       110       120  
         Q87IM6_VIBPA     1 MALGFGMKMELQQFLDALASSPEKIEFETTMAVIEDNYDFTPAAFTNGNTQNDANENNGSCKIFAFGLLNALDKEATLACFGRFYREDVLLHPENNDHQNIRNFMVTGWEGIQFETSALTAK 122
               SCOP domains -------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2qhqB00 B:2-121 vpa0580 domain like                                                                                     - CATH domains
           Pfam domains (1) --------HopJ-2qhqB01 B:9-119                                                                                           --- Pfam domains (1)
           Pfam domains (2) --------HopJ-2qhqB02 B:9-119                                                                                           --- Pfam domains (2)
         Sec.struct. author .........hhhhhhhhhhhhhhhhhhhhhhhhhhhheee....eee..eee....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhh..........hhhhhhhhhhh...eee....eee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------- Transcript
                 2qhq B   1 mALGFGmkmELQQFLDALASSPEkIEFETTmAVIEDNYDFTPAAFTNGNTQNDANENNGSCkIFAFGLLNALDkEATLACFGRFYREDVLLHPENNDHQNIRNFmVTGWEGIQFETSALTAk 122
                            |     ||10        20   |    30|       40        50        60 |      70   |    80        90       100    |  110       120 |
                            |     7-MSE           24-MLY 31-MSE                         62-MLY      74-MLY                        105-MSE          122-MLY
                            1-MSE  8-MLY                                                                                                              
                                    9-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2QHQ)

(-) CATH Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Class: Alpha Beta (26913)

(-) Pfam Domains  (1, 2)

Asymmetric/Biological Unit
(-)
Clan: no clan defined [family: HopJ] (2)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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