2Q8K - JenaLib

Asymmetric/Biological Unit (12, 12)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1a	ENST00000303305	1a	ENSE00001324147	chr12:56498103-56498609	507	PA2G4_HUMAN	1-30	30	1	A:7-30	24
1.2	ENST00000303305	2	ENSE00001301849	chr12:56500372-56500500	129	PA2G4_HUMAN	30-73	44	1	A:30-73	44
1.3	ENST00000303305	3	ENSE00001144359	chr12:56500774-56500879	106	PA2G4_HUMAN	73-108	36	1	A:73-108	36
1.4	ENST00000303305	4	ENSE00001144349	chr12:56500971-56501040	70	PA2G4_HUMAN	108-131	24	1	A:108-131	24
1.5	ENST00000303305	5	ENSE00001144338	chr12:56501305-56501397	93	PA2G4_HUMAN	132-162	31	1	A:132-162	31
1.6	ENST00000303305	6	ENSE00001144329	chr12:56503014-56503077	64	PA2G4_HUMAN	163-184	22	1	A:163-184	22
1.7	ENST00000303305	7	ENSE00001144320	chr12:56503641-56503719	79	PA2G4_HUMAN	184-210	27	1	A:184-210	27
1.8	ENST00000303305	8	ENSE00001144310	chr12:56504183-56504261	79	PA2G4_HUMAN	210-236	27	1	A:210-236	27
1.9	ENST00000303305	9	ENSE00001144302	chr12:56504343-56504476	134	PA2G4_HUMAN	237-281	45	1	A:237-281	45
1.10	ENST00000303305	10	ENSE00001144293	chr12:56504748-56504842	95	PA2G4_HUMAN	281-313	33	1	A:281-313 (gaps)	33
1.11	ENST00000303305	11	ENSE00001144284	chr12:56504966-56505093	128	PA2G4_HUMAN	313-355	43	1	A:313-355	43
1.12	ENST00000303305	12	ENSE00001242625	chr12:56505260-56505313	54	PA2G4_HUMAN	356-373	18	1	A:356-362	7
1.14	ENST00000303305	14	ENSE00001322593	chr12:56506607-56507693	1087	PA2G4_HUMAN	374-394	21	0	-	-

Sequences/Alignments

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:354
 aligned with PA2G4_HUMAN | Q9UQ80 from UniProtKB/Swiss-Prot  Length:394

    Alignment length:356
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356      
          PA2G4_HUMAN     7 QQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAFEDEKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSSA 362
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------Peptidase_M24-2q8kA01 A:19-263                                                                                                                                                                                                                       --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh.........eeeeeeeeeee..eee.................eeeeeeeeee..eeeeeeeeee.........hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...ee....eeeee.........eee...hhhhhhhh.........eeeeeeeee......ee......eeee.........hhhhhhhhhhhhhhhh...ee.hhh--hhhhhhhhhhhhhh..eeee..ee......eeeeeeeeeee..eeee......hhhhh.......hhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------MAP_2            -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
           Transcript 1 (1) Exon 1.1a  PDB: A:7-30  ------------------------------------------Exon 1.3  PDB: A:73-108             -----------------------Exon 1.5  PDB: A:132-162       Exon 1.6              -------------------------Exon 1.8  PDB: A:210-236   --------------------------------------------Exon 1.10  PDB: A:281-313 (gaps) ------------------------------------------1.12    Transcript 1 (1)
           Transcript 1 (2) -----------------------Exon 1.2  PDB: A:30-73 UniProt: 30-73       ----------------------------------Exon 1.4  PDB: A:108-131----------------------------------------------------Exon 1.7  PDB: A:184-210   --------------------------Exon 1.9  PDB: A:237-281 UniProt: 237-281    -------------------------------Exon 1.11  PDB: A:313-355 UniProt: 313-355 ------- Transcript 1 (2)
                 2q8k A   7 QQEQTIAEDLVVTKYKMGGDIANRVLRSLVEASSSGVSVLSLCEKGDAMIMEETGKIFKKEKEMKKGIAFPTSISVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVVDVAQGTQVTGRKADVIKAAHLCAEAALRLVKPGNQNTQVTEAWNKVAHSFNCTPIEGMLSHQLKQHVIDGEKTIIQNPTDQQKKDHEKAEFEVHEVYAVDVLVSSGEGKAKDAGQRTTIYKRDPSKQYGLKMKTSRAFFSEVERRFDAMPFTLRAF--EKKARMGVVECAKHELLQPFNVLYEKEGEFVAQFKFTVLLMPNGPMRITSGPFEPDLYKSEMEVQDAELKALLQSSA 362
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276      |286       296       306       316       326       336       346       356      
                                                                                                                                                                                                                                                                                                              283  |                                                                            
                                                                                                                                                                                                                                                                                                                 286

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (21, 21)

Asymmetric/Biological Unit(hide GO term definitions)

Chain A (PA2G4_HUMAN | Q9UQ80)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0003723	RNA binding	Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
	GO:0031625	ubiquitin protein ligase binding	Interacting selectively and non-covalently with a ubiquitin protein ligase enzyme, any of the E3 proteins.
biological process
	GO:0007050	cell cycle arrest	A regulatory process that halts progression through the cell cycle during one of the normal phases (G1, S, G2, M).
	GO:0008283	cell proliferation	The multiplication or reproduction of cells, resulting in the expansion of a cell population.
	GO:0043066	negative regulation of apoptotic process	Any process that stops, prevents, or reduces the frequency, rate or extent of cell death by apoptotic process.
	GO:0045892	negative regulation of transcription, DNA-templated	Any process that stops, prevents, or reduces the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0045597	positive regulation of cell differentiation	Any process that activates or increases the frequency, rate or extent of cell differentiation.
	GO:0006364	rRNA processing	Any process involved in the conversion of a primary ribosomal RNA (rRNA) transcript into one or more mature rRNA molecules.
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006417	regulation of translation	Any process that modulates the frequency, rate or extent of the chemical reactions and pathways resulting in the formation of proteins by the translation of mRNA or circRNA.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.
	GO:0030529	intracellular ribonucleoprotein complex	An intracellular macromolecular complex containing both protein and RNA molecules.
	GO:0016020	membrane	A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
	GO:0005730	nucleolus	A small, dense body one or more of which are present in the nucleus of eukaryotic cells. It is rich in RNA and protein, is not bounded by a limiting membrane, and is not seen during mitosis. Its prime function is the transcription of the nucleolar DNA into 45S ribosomal-precursor RNA, the processing of this RNA into 5.8S, 18S, and 28S components of ribosomal RNA, and the association of these components with 5S RNA and proteins synthesized outside the nucleolus. This association results in the formation of ribonucleoprotein precursors; these pass into the cytoplasm and mature into the 40S and 60S subunits of the ribosome.
	GO:0005654	nucleoplasm	That part of the nuclear content other than the chromosomes or the nucleolus.
	GO:0005634	nucleus	A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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	2q8k
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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 7)

Sites (7, 7)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (1, 1)

Exons (12, 12)