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2Q8K
Asym. Unit
Info
Asym.Unit (140 KB)
Biol.Unit 1 (135 KB)
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(1)
Title
:
THE CRYSTAL STRUCTURE OF EBP1
Authors
:
E. Kowalinski, G. Bange, K. Wild, I. Sinning
Date
:
11 Jun 07 (Deposition) - 25 Sep 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.60
Chains
:
Asym. Unit : A
Biol. Unit 1: A (1x)
Keywords
:
Ebp1, Pa2G4, Methionine Aminopeptidase, Pita-Bread, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
E. Kowalinski, G. Bange, B. Bradatsch, E. Hurt, K. Wild, I. Sinning
The Crystal Structure Of Ebp1 Reveals A Methionine Aminopeptidase Fold As Binding Platform For Multiple Interactions.
Febs Lett. V. 581 4450 2007
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GOL
2
Ligand/Ion
GLYCEROL
2
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
ARG A:33 , PRO A:337 , HOH A:815 , HOH A:847 , HOH A:877 , HOH A:959
BINDING SITE FOR RESIDUE SO4 A 501
2
AC2
SOFTWARE
HIS A:147 , ARG A:332 , GLY A:336 , HOH A:623 , HOH A:678 , HOH A:799 , HOH A:806 , HOH A:815 , HOH A:890
BINDING SITE FOR RESIDUE SO4 A 502
3
AC3
SOFTWARE
LYS A:191 , VAL A:194 , GLY A:197 , GLU A:198 , HOH A:729
BINDING SITE FOR RESIDUE SO4 A 503
4
AC4
SOFTWARE
ASN A:171 , HIS A:175 , HOH A:684 , HOH A:754 , HOH A:767 , HOH A:811 , HOH A:1017
BINDING SITE FOR RESIDUE SO4 A 504
5
AC5
SOFTWARE
LYS A:258 , MET A:259 , LYS A:260 , HOH A:684 , HOH A:743 , HOH A:902
BINDING SITE FOR RESIDUE SO4 A 505
6
AC6
SOFTWARE
ILE A:80 , SER A:81 , VAL A:82 , PHE A:89 , TYR A:98 , TYR A:309
BINDING SITE FOR RESIDUE GOL A 601
7
AC7
SOFTWARE
PHE A:64 , LYS A:65 , LYS A:66 , GLU A:67
BINDING SITE FOR RESIDUE GOL A 602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: MAP_2 (A:104-120)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
MAP_2
PS01202
Methionine aminopeptidase subfamily 2 signature.
PA2G4_HUMAN
104-120
1
A:104-120
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Exons
(12, 12)
Info
All Exons
Exon 1.1a (A:7-30)
Exon 1.2 (A:30-73)
Exon 1.3 (A:73-108)
Exon 1.4 (A:108-131)
Exon 1.5 (A:132-162)
Exon 1.6 (A:163-184)
Exon 1.7 (A:184-210)
Exon 1.8 (A:210-236)
Exon 1.9 (A:237-281)
Exon 1.10 (A:281-313 (gaps))
Exon 1.11 (A:313-355)
Exon 1.12 (A:356-362)
View:
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All Exon Boundaries
01: Boundary -/1.1a
02: Boundary 1.1a/1.2
03: Boundary 1.2/1.3
04: Boundary 1.3/1.4
05: Boundary 1.4/1.5
06: Boundary 1.5/1.6
07: Boundary 1.6/1.7
08: Boundary 1.7/1.8
09: Boundary 1.8/1.9
10: Boundary 1.9/1.10
11: Boundary 1.10/1.11
12: Boundary 1.11/1.12
13: Boundary 1.12/1.14
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000303305
1a
ENSE00001324147
chr12:
56498103-56498609
507
PA2G4_HUMAN
1-30
30
1
A:7-30
24
1.2
ENST00000303305
2
ENSE00001301849
chr12:
56500372-56500500
129
PA2G4_HUMAN
30-73
44
1
A:30-73
44
1.3
ENST00000303305
3
ENSE00001144359
chr12:
56500774-56500879
106
PA2G4_HUMAN
73-108
36
1
A:73-108
36
1.4
ENST00000303305
4
ENSE00001144349
chr12:
56500971-56501040
70
PA2G4_HUMAN
108-131
24
1
A:108-131
24
1.5
ENST00000303305
5
ENSE00001144338
chr12:
56501305-56501397
93
PA2G4_HUMAN
132-162
31
1
A:132-162
31
1.6
ENST00000303305
6
ENSE00001144329
chr12:
56503014-56503077
64
PA2G4_HUMAN
163-184
22
1
A:163-184
22
1.7
ENST00000303305
7
ENSE00001144320
chr12:
56503641-56503719
79
PA2G4_HUMAN
184-210
27
1
A:184-210
27
1.8
ENST00000303305
8
ENSE00001144310
chr12:
56504183-56504261
79
PA2G4_HUMAN
210-236
27
1
A:210-236
27
1.9
ENST00000303305
9
ENSE00001144302
chr12:
56504343-56504476
134
PA2G4_HUMAN
237-281
45
1
A:237-281
45
1.10
ENST00000303305
10
ENSE00001144293
chr12:
56504748-56504842
95
PA2G4_HUMAN
281-313
33
1
A:281-313 (gaps)
33
1.11
ENST00000303305
11
ENSE00001144284
chr12:
56504966-56505093
128
PA2G4_HUMAN
313-355
43
1
A:313-355
43
1.12
ENST00000303305
12
ENSE00001242625
chr12:
56505260-56505313
54
PA2G4_HUMAN
356-373
18
1
A:356-362
7
1.14
ENST00000303305
14
ENSE00001322593
chr12:
56506607-56507693
1087
PA2G4_HUMAN
374-394
21
0
-
-
[
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SCOP Domains
(0, 0)
Info
All SCOP Domains
View:
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Sorry, no Info available
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CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
(1, 1)
Info
all PFAM domains
1a: PFAM_Peptidase_M24_2q8kA01 (A:19-263)
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Clans
(
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Families
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)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Peptidase_M24]
(23)
Family
:
Peptidase_M24
(23)
Homo sapiens (Human)
(2)
1a
Peptidase_M24-2q8kA01
A:19-263
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Chain A
Asymmetric Unit 1
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