2PSW - JenaLib

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Biological Unit 3 (Jmol Viewer)

Title :   HUMAN MAK3 HOMOLOG IN COMPLEX WITH COA

Authors :   J. R. Walker, A. Schuetz, T. Antoshenko, H. Wu, G. Bernstein, P. Loppnau J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkare A. N. Plotnikov, Structural Genomics Consortium (Sgc)

Date :   07 May 07 (Deposition) - 05 Jun 07 (Release) - 31 Aug 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.10

Chains :   Asym. Unit : A,B,C
Biol. Unit 1: A  (1x)
Biol. Unit 2: B  (1x)
Biol. Unit 3: C  (1x)

Keywords :   Acetyltransferase, Structural Genomics Consortium, Sgc, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   A. Schuetz, J. R. Walker, T. Antoshenko, H. Wu, G. Bernstein, P. Loppnau, J. Weigelt, M. Sundstrom, C. H. Arrowsmith, A. M. Edwards, A. Bochkarev, A. N. Plotnikov
Structure Of Human Mak3 Homolog.
To Be Published
PubMed: search

Molecule 1 - N-ACETYLTRANSFERASE 13
	Chains	:	A, B, C
	EC Number	:	2.3.1.88
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET28-LIC
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	NAT13, MAK3, NAT5
	Organism Common	:	HUMAN
	Organism Scientific	:	HOMO SAPIENS
	Organism Taxid	:	9606
	Synonym	:	HNAT5, HSAN

		1	2	3
Asymmetric Unit	:	A	B	C
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		B
Biological Unit 3 (1x)	:			C

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (2, 9)

No.	Name	Count	Type	Full Name
1	COA	3	Ligand/Ion	COENZYME A
2	MSE	6	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 1 (2, 3)

No.	Name	Count	Type	Full Name
1	COA	1	Ligand/Ion	COENZYME A
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	COA	1	Ligand/Ion	COENZYME A
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Biological Unit 3 (2, 3)

No.	Name	Count	Type	Full Name
1	COA	1	Ligand/Ion	COENZYME A
2	MSE	2	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (3, 3)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	PHE A:27 , LEU A:77 , GLY A:78 , CYS A:79 , ARG A:84 , ARG A:85 , LEU A:86 , GLY A:87 , ILE A:88 , GLY A:89 , THR A:90 , ASN A:117 , SER A:119 , ASP A:122 , PHE A:123 , TYR A:124 , LYS A:126 , HOH A:203 , HOH A:226 , HOH A:243 , HOH A:244 , HOH A:248	BINDING SITE FOR RESIDUE COA A 201
2	AC2	SOFTWARE	ILE B:26 , PHE B:27 , LEU B:77 , GLY B:78 , CYS B:79 , ARG B:84 , ARG B:85 , LEU B:86 , GLY B:87 , ILE B:88 , GLY B:89 , THR B:90 , ASN B:117 , SER B:119 , ALA B:120 , ASP B:122 , PHE B:123 , TYR B:124 , LYS B:126 , HOH B:202 , HOH B:203 , HOH B:228 , HOH B:230 , HOH B:233 , HOH B:240 , HOH B:241	BINDING SITE FOR RESIDUE COA B 201
3	AC3	SOFTWARE	ILE C:26 , PHE C:27 , LEU C:77 , GLY C:78 , CYS C:79 , ARG C:84 , ARG C:85 , LEU C:86 , GLY C:87 , ILE C:88 , GLY C:89 , THR C:90 , LEU C:111 , ASN C:117 , SER C:119 , ASP C:122 , PHE C:123 , TYR C:124 , LYS C:126 , HOH C:202 , HOH C:236 , HOH C:248 , HOH C:255 , HOH C:258	BINDING SITE FOR RESIDUE COA C 201

(no "SS Bond" information available for 2PSW)

Asymmetric Unit

No.	Residues
1	Glu A:143	-	Pro A:144
2	Glu B:143	-	Pro B:144
3	Glu C:143	-	Pro C:144

(no "SAP(SNP)/Variant" information available for 2PSW)

Asymmetric Unit (1, 3)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	NAA50_HUMAN	6-155	3	A:6-155 B:6-155 C:6-155

Biological Unit 1 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	NAA50_HUMAN	6-155	1	A:6-155 - -

Biological Unit 2 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	NAA50_HUMAN	6-155	1	- B:6-155 -

Biological Unit 3 (1, 1)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	NAA50_HUMAN	6-155	1	- - C:6-155

Asymmetric Unit (5, 13)

	ENSEMBL					UniProtKB			PDB
No.	Transcript ID	Exon	Exon ID	Genome Location	Length	ID	Location	Length	Count	Location	Length
1.1b	ENST00000240922	1b	ENSE00001891972	chr3:113465121-113464789	333	NAA50_HUMAN	1-3	3	1	A:1-3 - -	3 - -
1.4c	ENST00000240922	4c	ENSE00001175035	chr3:113442942-113442806	137	NAA50_HUMAN	3-49	47	3	A:3-49 B:4-49 C:4-49	47 46 46
1.5b	ENST00000240922	5b	ENSE00000823545	chr3:113442388-113442269	120	NAA50_HUMAN	49-89	41	3	A:49-89 B:49-89 C:49-89	41 41 41
1.6	ENST00000240922	6	ENSE00000823544	chr3:113441819-113441753	67	NAA50_HUMAN	89-111	23	3	A:89-111 B:89-111 C:89-111	23 23 23
1.7f	ENST00000240922	7f	ENSE00001380209	chr3:113440784-113437841	2944	NAA50_HUMAN	111-169	59	3	A:111-155 B:111-155 C:111-155	45 45 45

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:155
 aligned with NAA50_HUMAN | Q9GZZ1 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:155
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150     
          NAA50_HUMAN     1 MKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLK 155
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee....hhhhhhhhhhhhh....hhhhhhhhhhhhh.eeeeee..eeeeeeeeeeeee..eeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeee...........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -----GNAT  PDB: A:6-155 UniProt: 6-155                                                                                                                      PROSITE
           Transcript 1 (1) 1.1---------------------------------------------Exon 1.5b  PDB: A:49-89 UniProt: 49-89   ---------------------Exon 1.7f  PDB: A:111-155 UniProt: 111-169    Transcript 1 (1)
           Transcript 1 (2) --Exon 1.4c  PDB: A:3-49 UniProt: 3-49           ---------------------------------------Exon 1.6  PDB: A:89-111-------------------------------------------- Transcript 1 (2)
                 2psw A   1 SKGSRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYImTLGCLAPYRRLGIGTKmLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLK 155
                                    10        20        30        40        50        60        70    |   80        90 |     100       110       120       130       140       150     
                                                                                                     75-MSE           92-MSE

Chain B from PDB  Type:PROTEIN  Length:152
 aligned with NAA50_HUMAN | Q9GZZ1 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:152
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153  
          NAA50_HUMAN     4 SRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLK 155
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee....hhhhhhhhhhhhh....hhhhhhhhhhhhh.eeeeee..eeeeeeeeeee......eeeeeeeee.hhhh..hhhhhhhhhhhhhhhh.....eeeeeee..hhhhhhhhhhh..eeeeee...........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --GNAT  PDB: B:6-155 UniProt: 6-155                                                                                                                      PROSITE
           Transcript 1 (1) ---------------------------------------------Exon 1.5b  PDB: B:49-89 UniProt: 49-89   ---------------------Exon 1.7f  PDB: B:111-155 UniProt: 111-169    Transcript 1 (1)
           Transcript 1 (2) Exon 1.4c  PDB: B:4-49 UniProt: 3-49          ---------------------------------------Exon 1.6  PDB: B:89-111-------------------------------------------- Transcript 1 (2)
                 2psw B   4 SRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYImTLGCLAPYRRLGIGTKmLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLK 155
                                    13        23        33        43        53        63        73 |      83        93       103       113       123       133       143       153  
                                                                                                  75-MSE           92-MSE

Chain C from PDB  Type:PROTEIN  Length:152
 aligned with NAA50_HUMAN | Q9GZZ1 from UniProtKB/Swiss-Prot  Length:169

    Alignment length:152
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153  
          NAA50_HUMAN     4 SRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYIMTLGCLAPYRRLGIGTKMLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLK 155
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) ---------------------------------------------Acetyltransf_1-2pswC01 C:49-130                                                   ------------------------- Pfam domains (1)
           Pfam domains (2) ---------------------------------------------Acetyltransf_1-2pswC02 C:49-130                                                   ------------------------- Pfam domains (2)
           Pfam domains (3) ---------------------------------------------Acetyltransf_1-2pswC03 C:49-130                                                   ------------------------- Pfam domains (3)
         Sec.struct. author ..eeeee....hhhhhhhhhhhhh....hhhhhhhhhhhhh.eeeeee..eeeeeeeeeeeee..eeeeeeeeeee.hhhh..hhhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..eeeeee...........eeeeeee.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --GNAT  PDB: C:6-155 UniProt: 6-155                                                                                                                      PROSITE
           Transcript 1 (1) ---------------------------------------------Exon 1.5b  PDB: C:49-89 UniProt: 49-89   ---------------------Exon 1.7f  PDB: C:111-155 UniProt: 111-169    Transcript 1 (1)
           Transcript 1 (2) Exon 1.4c  PDB: C:4-49 UniProt: 3-49          ---------------------------------------Exon 1.6  PDB: C:89-111-------------------------------------------- Transcript 1 (2)
                 2psw C   4 SRIELGDVTPHNIKQLKRLNQVIFPVSYNDKFYKDVLEVGELAKLAYFNDIAVGAVCCRVDHSQNQKRLYImTLGCLAPYRRLGIGTKmLNHVLNICEKDGTFDNIYLHVQISNESAIDFYRKFGFEIIETKKNYYKRIEPADAHVLQKNLK 155
                                    13        23        33        43        53        63        73 |      83        93       103       113       123       133       143       153  
                                                                                                  75-MSE           92-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2PSW)

(no "CATH Domain" information available for 2PSW)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Acetyltrans (109)

Family: Acetyltransf_1 (58)

Homo sapiens (Human) (6)

1a	Acetyltransf_1-2pswC01	C:49-130
1b	Acetyltransf_1-2pswC02	C:49-130
1c	Acetyltransf_1-2pswC03	C:49-130

Asymmetric Unit(hide GO term definitions)

Chain A,B,C (NAA50_HUMAN | Q9GZZ1)

molecular function
	GO:0010485	H4 histone acetyltransferase activity	Catalysis of the reaction: acetyl-CoA + histone H4 = CoA + acetyl-histone H4.
	GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
	GO:0004596	peptide alpha-N-acetyltransferase activity	Catalysis of the reaction: acetyl-CoA + peptide = CoA + N-alpha-acetylpeptide. This reaction is the acetylation of the N-terminal amino acid residue of a peptide or protein.
	GO:0052858	peptidyl-lysine acetyltransferase activity	Catalysis of the reaction: acetyl phosphate + peptidyl-L-lysine = phosphate + peptidyl-N6-acetyl-L-lysine.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
	GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
biological process
	GO:0006474	N-terminal protein amino acid acetylation	The acetylation of the N-terminal amino acid of proteins.
	GO:0043967	histone H4 acetylation	The modification of histone H4 by the addition of an acetyl group.
	GO:0071962	mitotic sister chromatid cohesion, centromeric	The cell cycle process in which centromeres of sister chromatids are joined during mitosis.
cellular component
	GO:0031415	NatA complex	A conserved complex that catalyzes the transfer of an acetyl group to an N-terminal Ser, Ala, Gly, or Thr residue of a protein acceptor molecule. In Saccharomyces the complex includes Nat1p and Ard1p, and may contain additional proteins.
	GO:0005737	cytoplasm	All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
	GO:0070062	extracellular exosome	A vesicle that is released into the extracellular region by fusion of the limiting endosomal membrane of a multivesicular body with the plasma membrane. Extracellular exosomes, also simply called exosomes, have a diameter of about 40-100 nm.

Asymmetric Unit
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	Cis Peptide Bonds
		Glu A:143 - Pro A:144	[ RasMol ]
		Glu B:143 - Pro B:144	[ RasMol ]
		Glu C:143 - Pro C:144	[ RasMol ]

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	NAA50_HUMAN \| Q9GZZ1	:	2ob0 3tfy 4x5k

2ob0	HUMAN MAK3 HOMOLOG IN COMPLEX WITH ACETYL-COA

Description

Compounds

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Ligands, Modified Residues, Ions (2, 9)

Sites (3, 3)

SS Bonds (0, 0)

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