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(-) Description

Title :  STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A PROTEIN LPG0085 WITH UNKNOWN FUNCTION (DUF785) FROM LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1.
 
Authors :  K. Tan, R. Mulligan, S. Moy, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)
Date :  20 Apr 07  (Deposition) - 22 May 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Apc86035. 2, Protein Lpg0085, Duf785, Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. Tan, R. Mulligan, S. Moy, A. Joachimiak
The Crystal Structure Of A Protein Lpg0085 With Unknown Function (Duf785) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Atcc: 33152
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21
    Expression System Plasmid: PMCSG19
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 26-168
    Gene: LPG0085
    Organism Scientific: LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1
    Organism Taxid: 272624
    Strain: PHILADELPHIA 1, DSM 7513
    Synonym: PROTEIN LPG0085, PROTEIN DUF785

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1ACT5Ligand/IonACETATE ION
2FMT5Ligand/IonFORMIC ACID
Biological Unit 1 (2, 7)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2FMT4Ligand/IonFORMIC ACID
Biological Unit 2 (2, 3)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2FMT1Ligand/IonFORMIC ACID

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS B:32 , THR B:34 , GLY B:123 , THR B:165BINDING SITE FOR RESIDUE ACT B 201
2AC2SOFTWARELEU A:40 , THR A:41 , ILE A:60 , THR A:61 , THR A:79 , TYR A:82BINDING SITE FOR RESIDUE ACT A 203
3AC3SOFTWARETHR A:162BINDING SITE FOR RESIDUE ACT A 204
4AC4SOFTWAREGLY A:49 , LYS A:51 , ARG A:147BINDING SITE FOR RESIDUE ACT A 205
5AC5SOFTWAREVAL A:126 , GLY B:86 , GLU B:87 , LEU B:117 , ASN B:119BINDING SITE FOR RESIDUE FMT B 301
6AC6SOFTWAREGLY A:86 , GLU A:87 , LEU A:117 , VAL B:126BINDING SITE FOR RESIDUE FMT A 302
7AC7SOFTWAREASP A:47 , ASP B:47BINDING SITE FOR RESIDUE FMT A 303
8AC8SOFTWARELYS A:51 , ARG A:147 , TYR B:29 , HOH B:327BINDING SITE FOR RESIDUE FMT A 304
9AC9SOFTWARESER A:23 , ASN A:24BINDING SITE FOR RESIDUE FMT A 305

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2PMA)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2PMA)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2PMA)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2PMA)

(-) Exons   (0, 0)

(no "Exon" information available for 2PMA)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:129
 aligned with Q5ZZC6_LEGPH | Q5ZZC6 from UniProtKB/TrEMBL  Length:175

    Alignment length:147
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       
         Q5ZZC6_LEGPH    20 ANSEAQIYGYVEKATLIDQNLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALTFTTK 166
               SCOP domains --   -d2pmaa1 A:26-166 Uncharacterized protein LPG0085                                                                                              SCOP domains
               CATH domains 2p   maA01 A:23-158 Acid Proteases                                                                                                         -------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..---eeee.eeeeee.hhheeeeeee......eeee.eeeeeeee..eeeeeeeeee..eeeeeeeeeeeeee.---------------..eeeeeeeeeee..eeeeeeeeee........eeehhhhhhhh.eeee........ Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pma A  23 SN---AIYGYVEKATLIDQNLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKI---------------PIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALTFTTK 166
                             |   |  29        39        49        59        69        79        89    |    -         -|      119       129       139       149       159       
                             |  25                                                                   94             110                                                        
                            24                                                                                                                                                 


Chain B from PDB  Type:PROTEIN  Length:127
 aligned with Q5ZZC6_LEGPH | Q5ZZC6 from UniProtKB/TrEMBL  Length:175

    Alignment length:147
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       
         Q5ZZC6_LEGPH    20 ANSEAQIYGYVEKATLIDQNLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKVKIKVRSSETNPGLLRTTPIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALTFTTK 166
               SCOP domains d2   pmab_ B: Uncharacterized protein LPG0085                                                                                                       SCOP domains
               CATH domains 2p   maB01 B:23-158 Acid Proteases                                                                                                         -------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..---eee..eeeeee.hhheeeeeee......eeee.eeeeeeee..eeeeeeeeee..eeeeeeee.....-----------------.....eeeeeeee..eeeeeeeeee........eeehhhhhhhh.eee......... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pma B  23 SN---AIYGYVEKATLIDQNLTLSAKLDTGAKSASLHAVNITEIEKKGIPYLRFTVPTKTGDYSFEGEYVGKV-----------------PIKRPVVLLNIKLGDKVRTIKVNLTNRKRFLYPLLLGRDAIIDFNGAVDPALTFTTK 166
                             |   |  29        39        49        59        69        79        89  |      -         -|      119       129       139       149       159       
                            24  25                                                                 92               110
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

Asymmetric Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (1, 2)

Asymmetric Unit
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2PMA)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 2PMA)

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