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2PMA
Biol. Unit 1
Info
Asym.Unit (52 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (23 KB)
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(1)
Title
:
STRUCTURAL GENOMICS, THE CRYSTAL STRUCTURE OF A PROTEIN LPG0085 WITH UNKNOWN FUNCTION (DUF785) FROM LEGIONELLA PNEUMOPHILA SUBSP. PNEUMOPHILA STR. PHILADELPHIA 1.
Authors
:
K. Tan, R. Mulligan, S. Moy, A. Joachimiak, Midwest Center For Struc Genomics (Mcsg)
Date
:
20 Apr 07 (Deposition) - 22 May 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.89
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A (1x)
Biol. Unit 2: B (1x)
Keywords
:
Apc86035. 2, Protein Lpg0085, Duf785, Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Unknown Function
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Reference
:
K. Tan, R. Mulligan, S. Moy, A. Joachimiak
The Crystal Structure Of A Protein Lpg0085 With Unknown Function (Duf785) From Legionella Pneumophila Subsp. Pneumophila Str. Philadelphia 1.
To Be Published
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: ACETATE ION (ACTa)
1b: ACETATE ION (ACTb)
1c: ACETATE ION (ACTc)
1d: ACETATE ION (ACTd)
1e: ACETATE ION (ACTe)
2a: FORMIC ACID (FMTa)
2b: FORMIC ACID (FMTb)
2c: FORMIC ACID (FMTc)
2d: FORMIC ACID (FMTd)
2e: FORMIC ACID (FMTe)
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No.
Name
Count
Type
Full Name
1
ACT
3
Ligand/Ion
ACETATE ION
2
FMT
4
Ligand/Ion
FORMIC ACID
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Sites
(8, 8)
Info
All Sites
1: AC2 (SOFTWARE)
2: AC3 (SOFTWARE)
3: AC4 (SOFTWARE)
4: AC5 (SOFTWARE)
5: AC6 (SOFTWARE)
6: AC7 (SOFTWARE)
7: AC8 (SOFTWARE)
8: AC9 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC2
SOFTWARE
LEU A:40 , THR A:41 , ILE A:60 , THR A:61 , THR A:79 , TYR A:82
BINDING SITE FOR RESIDUE ACT A 203
2
AC3
SOFTWARE
THR A:162
BINDING SITE FOR RESIDUE ACT A 204
3
AC4
SOFTWARE
GLY A:49 , LYS A:51 , ARG A:147
BINDING SITE FOR RESIDUE ACT A 205
4
AC5
SOFTWARE
VAL A:126 , GLY B:86 , GLU B:87 , LEU B:117 , ASN B:119
BINDING SITE FOR RESIDUE FMT B 301
5
AC6
SOFTWARE
GLY A:86 , GLU A:87 , LEU A:117 , VAL B:126
BINDING SITE FOR RESIDUE FMT A 302
6
AC7
SOFTWARE
ASP A:47 , ASP B:47
BINDING SITE FOR RESIDUE FMT A 303
7
AC8
SOFTWARE
LYS A:51 , ARG A:147 , TYR B:29 , HOH B:327
BINDING SITE FOR RESIDUE FMT A 304
8
AC9
SOFTWARE
SER A:23 , ASN A:24
BINDING SITE FOR RESIDUE FMT A 305
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
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Exons
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
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SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d2pmaa1 (A:26-166)
1b: SCOP_d2pmab_ (B:)
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Class
:
All beta proteins
(24004)
Fold
:
Acid proteases
(1120)
Superfamily
:
Acid proteases
(1120)
Family
:
LPG0085-like
(1)
Protein domain
:
Uncharacterized protein LPG0085
(1)
Legionella pneumophila [TaxId: 446]
(1)
1a
d2pmaa1
A:26-166
1b
d2pmab_
B:
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_2pmaA01 (A:23-158)
1b: CATH_2pmaB01 (B:23-158)
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Organisms
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(
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Class
:
Mainly Beta
(13760)
Architecture
:
Beta Barrel
(4804)
Topology
:
Cathepsin D, subunit A; domain 1
(745)
Homologous Superfamily
:
Acid Proteases
(745)
Pneumophila str (Legionella pneumophila subsp)
(1)
1a
2pmaA01
A:23-158
1b
2pmaB01
B:23-158
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Pfam Domains
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Asym.Unit (52 KB)
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