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Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Biological Unit 4 (Jmol Viewer)

Biological Unit 5 (Jmol Viewer)

Biological Unit 6 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE PUTATIVE ACETYLTRANSFERASE OF GNAT FAMILY FROM SHIGELLA FLEXNERI

Authors :   Y. Kim, H. Li, D. Holzle, A. Joachimiak, Midwest Center For Structur Genomics (Mcsg)

Date :   01 Apr 07 (Deposition) - 24 Apr 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.00

Chains :   Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: E,F  (1x)
Biol. Unit 4: G,H  (1x)
Biol. Unit 5: A (1x),B (1x),C (1x),D (1x),E (1x),F (1x),G (1x),H (1x)
Biol. Unit 6: C (1x),D (1x),G (1x),H (1x)

Keywords :   Alpha-Beta-Alpha Sandwich, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   Y. Kim, H. Li, D. Holzle, A. Joachimiak
Crystal Structure Of The Putative Acetyltransferase Of Gnat Family From Shigella Flexneri
To Be Published
PubMed: search

Molecule 1 - ACETYLTRANSFERASE YPEA
	Atcc	:	700930
	Chains	:	A, B, C, D, E, F, G, H
	EC Number	:	2.3.1.-
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PMCSG7
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	YPEA, SF2487, S_2635
	Organism Scientific	:	SHIGELLA FLEXNERI 2A
	Organism Taxid	:	198215
	Strain	:	2457T

		1	2	3	4	5	6	7	8
Asymmetric Unit	:	A	B	C	D	E	F	G	H
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:					E	F
Biological Unit 4 (1x)	:							G	H
Biological Unit 5 (1x)	:	A (1x)	B (1x)	C (1x)	D (1x)	E (1x)	F (1x)	G (1x)	H (1x)
Biological Unit 6 (1x)	:			C (1x)	D (1x)			G (1x)	H (1x)

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 62)

No.	Name	Count	Type	Full Name
1	ACY	2	Ligand/Ion	ACETIC ACID
2	EDO	7	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	48	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	5	Ligand/Ion	ZINC ION

Biological Unit 1 (2, 13)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	EDO	-1	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 2 (2, 13)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 3 (2, 16)

No.	Name	Count	Type	Full Name
1	ACY	-1	Ligand/Ion	ACETIC ACID
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 4 (3, 15)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 5 (3, 28)

No.	Name	Count	Type	Full Name
1	ACY	2	Ligand/Ion	ACETIC ACID
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	24	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Biological Unit 6 (3, 15)

No.	Name	Count	Type	Full Name
1	ACY	1	Ligand/Ion	ACETIC ACID
2	EDO	2	Ligand/Ion	1,2-ETHANEDIOL
3	MSE	12	Mod. Amino Acid	SELENOMETHIONINE
4	ZN	-1	Ligand/Ion	ZINC ION

Asymmetric Unit (14, 14)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	GLU B:124 , HIS B:125 , HOH B:625 , HOH B:628 , GLU H:124 , HIS H:125 , HOH H:618	BINDING SITE FOR RESIDUE ZN B 601
02	AC2	SOFTWARE	GLU D:124 , HIS D:125 , GLU E:124 , HIS E:125 , HOH E:619 , HOH E:638 , HOH E:661	BINDING SITE FOR RESIDUE ZN E 602
03	AC3	SOFTWARE	ASP G:127 , HOH G:610	BINDING SITE FOR RESIDUE ZN G 603
04	AC4	SOFTWARE	GLU B:9 , GLU B:12 , GLU B:13 , HOH B:661	BINDING SITE FOR RESIDUE ZN B 604
05	AC5	SOFTWARE	ASP G:127 , HOH G:627 , HOH G:654 , GLU H:109	BINDING SITE FOR RESIDUE ZN H 605
06	AC6	SOFTWARE	VAL D:74 , PHE D:78 , ARG D:79 , GLY D:80 , ARG D:81 , GLY D:82 , ILE D:83 , ALA D:84	BINDING SITE FOR RESIDUE EDO D 608
07	AC7	SOFTWARE	ASP E:63 , LYS F:37 , HIS F:40 , ASP F:41 , LEU F:44 , GLY F:61 , TYR F:62	BINDING SITE FOR RESIDUE EDO F 609
08	AC8	SOFTWARE	VAL F:74 , HOH F:635	BINDING SITE FOR RESIDUE EDO F 610
09	AC9	SOFTWARE	HOH A:216 , ASP B:127 , HOH G:668 , HIS H:125 , ASP H:127	BINDING SITE FOR RESIDUE EDO H 611
10	BC1	SOFTWARE	VAL F:114 , TYR F:118 , HOH F:673 , HOH F:686	BINDING SITE FOR RESIDUE EDO F 612
11	BC2	SOFTWARE	MSE H:117	BINDING SITE FOR RESIDUE EDO H 613
12	BC3	SOFTWARE	TRP E:27 , ARG E:134 , ARG F:66 , LYS F:102	BINDING SITE FOR RESIDUE EDO E 614
13	BC4	SOFTWARE	LYS G:102 , TRP H:27 , ARG H:134	BINDING SITE FOR RESIDUE ACY H 606
14	BC5	SOFTWARE	ASP A:63 , LYS B:37 , HIS B:40 , ASP B:41 , GLY B:61 , TYR B:62 , HOH B:609 , HOH B:615	BINDING SITE FOR RESIDUE ACY B 607

(no "SS Bond" information available for 2PDO)

(no "Cis Peptide Bond" information available for 2PDO)

(no "SAP(SNP)/Variant" information available for 2PDO)

Asymmetric Unit (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	YPEA_SHIFL	1-141	8	A:1-139 B:1-141 C:1-139 D:1-141 E:1-140 F:1-140 G:1-138 H:1-140

Biological Unit 1 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	YPEA_SHIFL	1-141	2	A:1-139 B:1-141 - - - - - -

Biological Unit 2 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	YPEA_SHIFL	1-141	2	- - C:1-139 D:1-141 - - - -

Biological Unit 3 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	YPEA_SHIFL	1-141	2	- - - - E:1-140 F:1-140 - -

Biological Unit 4 (1, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	YPEA_SHIFL	1-141	2	- - - - - - G:1-138 H:1-140

Biological Unit 5 (1, 8)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	YPEA_SHIFL	1-141	8	A:1-139 B:1-141 C:1-139 D:1-141 E:1-140 F:1-140 G:1-138 H:1-140

Biological Unit 6 (1, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	GNAT	PS51186	Gcn5-related N-acetyltransferase (GNAT) domain profile.	YPEA_SHIFL	1-141	4	- - C:1-139 D:1-141 - - G:1-138 H:1-140

(no "Exon" information available for 2PDO)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:140
 aligned with YPEA_SHIFL | P63422 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:140
                             1                                                                                                                                          
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139
           YPEA_SHIFL     - -MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDE 139
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2pdoA01 A:0-123  [code=3.40.630.30, no name defined]                                                                        ---------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: A:1-139 UniProt: 1-141                                                                                                           PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pdo A   0 AmEIRVFRQEDFEEVITLWERCDLLRPWNDPEmDIERKmNHDVSLFLVAEVNGEVVGTVmGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDmVLGmYERLGYEHADVLSLGKRLIEDE 139
                             |       9        19        29  |     39        49        59        69        79        89        99       109   |   119       129       139
                             |                             32-MSE |                   59-MSE                                               113-MSE                      
                             1-MSE                               38-MSE                                                                        117-MSE

Chain B from PDB  Type:PROTEIN  Length:141
 aligned with YPEA_SHIFL | P63422 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:141
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140 
           YPEA_SHIFL     1 MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEEY 141
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2pdoB01 B:2-123  [code=3.40.630.30, no name defined]                                                                      ------------------ CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee..eeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE GNAT  PDB: B:1-141 UniProt: 1-141                                                                                                             PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pdo B   1 mEIRVFRQEDFEEVITLWERCDLLRPWNDPEmDIERKmNHDVSLFLVAEVNGEVVGTVmGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDmVLGmYERLGYEHADVLSLGKRLIEDEEY 141
                            |       10        20        30 |     |40        50        60        70        80        90       100       110  |   |120       130       140 
                            1-MSE                         32-MSE |                   59-MSE                                               113-MSE                        
                                                                38-MSE                                                                        117-MSE

Chain C from PDB  Type:PROTEIN  Length:140
 aligned with YPEA_SHIFL | P63422 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:140
                             1                                                                                                                                          
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139
           YPEA_SHIFL     - -MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDE 139
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2pdoC01 C:0-123  [code=3.40.630.30, no name defined]                                                                        ---------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee..eeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: C:1-139 UniProt: 1-141                                                                                                           PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pdo C   0 AmEIRVFRQEDFEEVITLWERCDLLRPWNDPEmDIERKmNHDVSLFLVAEVNGEVVGTVmGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDmVLGmYERLGYEHADVLSLGKRLIEDE 139
                             |       9        19        29  |     39        49        59        69        79        89        99       109   |   119       129       139
                             1-MSE                         32-MSE |                   59-MSE                                               113-MSE                      
                                                                 38-MSE                                                                        117-MSE

Chain D from PDB  Type:PROTEIN  Length:142
 aligned with YPEA_SHIFL | P63422 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:142
                             1                                                                                                                                            
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139  
           YPEA_SHIFL     - -MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEEY 141
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2pdoD01 D:0-123  [code=3.40.630.30, no name defined]                                                                        ------------------ CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeee.hhhhhhhhhhhhhhhh......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee..eeeeeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: D:1-141 UniProt: 1-141                                                                                                             PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pdo D   0 AmEIRVFRQEDFEEVITLWERCDLLRPWNDPEmDIERKmNHDVSLFLVAEVNGEVVGTVmGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDmVLGmYERLGYEHADVLSLGKRLIEDEEY 141
                             |       9        19        29  |     39        49        59        69        79        89        99       109   |   119       129       139  
                             1-MSE                         32-MSE |                   59-MSE                                               113-MSE                        
                                                                 38-MSE                                                                        117-MSE

Chain E from PDB  Type:PROTEIN  Length:140
 aligned with YPEA_SHIFL | P63422 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           YPEA_SHIFL     1 MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEE 140
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2pdoE01 E:2-123  [code=3.40.630.30, no name defined]                                                                      ----------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.......hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee..eeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE GNAT  PDB: E:1-140 UniProt: 1-141                                                                                                            PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pdo E   1 mEIRVFRQEDFEEVITLWERCDLLRPWNDPEmDIERKmNHDVSLFLVAEVNGEVVGTVmGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDmVLGmYERLGYEHADVLSLGKRLIEDEE 140
                            |       10        20        30 |     |40        50        60        70        80        90       100       110  |   |120       130       140
                            1-MSE                         32-MSE |                   59-MSE                                               113-MSE                       
                                                                38-MSE                                                                        117-MSE

Chain F from PDB  Type:PROTEIN  Length:141
 aligned with YPEA_SHIFL | P63422 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:141
                             1                                                                                                                                           
                             |       9        19        29        39        49        59        69        79        89        99       109       119       129       139 
           YPEA_SHIFL     - -MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEE 140
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2pdoF01 F:0-123  [code=3.40.630.30, no name defined]                                                                        ----------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee..eeeeeee...... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -GNAT  PDB: F:1-140 UniProt: 1-141                                                                                                            PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pdo F   0 AmEIRVFRQEDFEEVITLWERCDLLRPWNDPEmDIERKmNHDVSLFLVAEVNGEVVGTVmGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDmVLGmYERLGYEHADVLSLGKRLIEDEE 140
                             |       9        19        29  |     39        49        59        69        79        89        99       109   |   119       129       139 
                             1-MSE                         32-MSE |                   59-MSE                                               113-MSE                       
                                                                 38-MSE                                                                        117-MSE

Chain G from PDB  Type:PROTEIN  Length:138
 aligned with YPEA_SHIFL | P63422 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:138
                                    10        20        30        40        50        60        70        80        90       100       110       120       130        
           YPEA_SHIFL     1 MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIED 138
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains -2pdoG01 G:2-123  [code=3.40.630.30, no name defined]                                                                      --------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee..eeeeeee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE GNAT  PDB: G:1-138 UniProt: 1-141                                                                                                          PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2pdo G   1 mEIRVFRQEDFEEVITLWERCDLLRPWNDPEmDIERKmNHDVSLFLVAEVNGEVVGTVmGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDmVLGmYERLGYEHADVLSLGKRLIED 138
                            |       10        20        30 |     |40        50        60        70        80        90       100       110  |   |120       130        
                            1-MSE                         32-MSE |                   59-MSE                                               113-MSE                     
                                                                38-MSE                                                                        117-MSE

Chain H from PDB  Type:PROTEIN  Length:140
 aligned with YPEA_SHIFL | P63422 from UniProtKB/Swiss-Prot  Length:141

    Alignment length:140
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140
           YPEA_SHIFL     1 MEIRVFRQEDFEEVITLWERCDLLRPWNDPEMDIERKMNHDVSLFLVAEVNGEVVGTVMGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDMVLGMYERLGYEHADVLSLGKRLIEDEE 140
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -2pdoH01 H:2-123  [code=3.40.630.30, no name defined]                                                                      ----------------- CATH domains
           Pfam domains (1) -----------------------------------------------Acetyltransf_1-2pdoH01 H:48-124                                              ---------------- Pfam domains (1)
           Pfam domains (2) -----------------------------------------------Acetyltransf_1-2pdoH02 H:48-124                                              ---------------- Pfam domains (2)
           Pfam domains (3) -----------------------------------------------Acetyltransf_1-2pdoH03 H:48-124                                              ---------------- Pfam domains (3)
           Pfam domains (4) -----------------------------------------------Acetyltransf_1-2pdoH04 H:48-124                                              ---------------- Pfam domains (4)
           Pfam domains (5) -----------------------------------------------Acetyltransf_1-2pdoH05 H:48-124                                              ---------------- Pfam domains (5)
           Pfam domains (6) -----------------------------------------------Acetyltransf_1-2pdoH06 H:48-124                                              ---------------- Pfam domains (6)
           Pfam domains (7) -----------------------------------------------Acetyltransf_1-2pdoH07 H:48-124                                              ---------------- Pfam domains (7)
           Pfam domains (8) -----------------------------------------------Acetyltransf_1-2pdoH08 H:48-124                                              ---------------- Pfam domains (8)
         Sec.struct. author .eeee.hhhhhhhhhhhhhhh.......hhhhhhhhhhhhh...eeeeee..eeeeeeeeee....eeeeeeee.hhhh..hhhhhhhhhhhhhhhhh...eeeeeee..hhhhhhhhhhh..ee..eeeeeee...... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE GNAT  PDB: H:1-140 UniProt: 1-141                                                                                                            PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2pdo H   1 mEIRVFRQEDFEEVITLWERCDLLRPWNDPEmDIERKmNHDVSLFLVAEVNGEVVGTVmGGYDGHRGSAYYLGVHPEFRGRGIANALLNRLEKKLIARGCPKIQINVPEDNDmVLGmYERLGYEHADVLSLGKRLIEDEE 140
                            |       10        20        30 |     |40        50        60        70        80        90       100       110  |   |120       130       140
                            1-MSE                         32-MSE |                   59-MSE                                               113-MSE                       
                                                                38-MSE                                                                        117-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2PDO)

Asymmetric Unit

Classes(

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Architectures( (-)

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Topologies( (-)

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Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aminopeptidase (284)

Homologous Superfamily: [code=3.40.630.30, no name defined] (126)

2457t (Shigella flexneri 2a str) (1)

1a	2pdoA01	A:0-123
1b	2pdoC01	C:0-123
1c	2pdoD01	D:0-123
1d	2pdoF01	F:0-123
1e	2pdoB01	B:2-123
1f	2pdoE01	E:2-123
1g	2pdoG01	G:2-123
1h	2pdoH01	H:2-123

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Acetyltrans (109)

Family: Acetyltransf_1 (58)

Shigella flexneri (1)

1a	Acetyltransf_1-2pdoH01	H:48-124
1b	Acetyltransf_1-2pdoH02	H:48-124
1c	Acetyltransf_1-2pdoH03	H:48-124
1d	Acetyltransf_1-2pdoH04	H:48-124
1e	Acetyltransf_1-2pdoH05	H:48-124
1f	Acetyltransf_1-2pdoH06	H:48-124
1g	Acetyltransf_1-2pdoH07	H:48-124
1h	Acetyltransf_1-2pdoH08	H:48-124

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (YPEA_SHIFL | P63422)


GO:0008080	N-acetyltransferase activity	Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.
GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
GO:0016746	transferase activity, transferring acyl groups	Catalysis of the transfer of an acyl group from one compound (donor) to another (acceptor).
GO:0016747	transferase activity, transferring acyl groups other than amino-acyl groups	Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).

Asymmetric Unit
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	2pdo
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Description

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Chains, Units

Ligands, Modified Residues, Ions (4, 62)

Sites (14, 14)

SS Bonds (0, 0)

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