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2PDO
Asym. Unit
Info
Asym.Unit (217 KB)
Biol.Unit 1 (56 KB)
Biol.Unit 2 (55 KB)
Biol.Unit 3 (55 KB)
Biol.Unit 4 (56 KB)
Biol.Unit 5 (207 KB)
Biol.Unit 6 (106 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PUTATIVE ACETYLTRANSFERASE OF GNAT FAMILY FROM SHIGELLA FLEXNERI
Authors
:
Y. Kim, H. Li, D. Holzle, A. Joachimiak, Midwest Center For Structur Genomics (Mcsg)
Date
:
01 Apr 07 (Deposition) - 24 Apr 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.00
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Biol. Unit 5: A,B,C,D,E,F,G,H (1x)
Biol. Unit 6: C,D,G,H (1x)
Keywords
:
Alpha-Beta-Alpha Sandwich, Structural Genomics, Psi-2, Protein Structure Initiative, Midwest Center For Structural Genomics, Mcsg, Transferase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
Y. Kim, H. Li, D. Holzle, A. Joachimiak
Crystal Structure Of The Putative Acetyltransferase Of Gnat Family From Shigella Flexneri
To Be Published
[
close entry info
]
Hetero Components
(4, 62)
Info
All Hetero Components
1a: ACETIC ACID (ACYa)
1b: ACETIC ACID (ACYb)
2a: 1,2-ETHANEDIOL (EDOa)
2b: 1,2-ETHANEDIOL (EDOb)
2c: 1,2-ETHANEDIOL (EDOc)
2d: 1,2-ETHANEDIOL (EDOd)
2e: 1,2-ETHANEDIOL (EDOe)
2f: 1,2-ETHANEDIOL (EDOf)
2g: 1,2-ETHANEDIOL (EDOg)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3ap: SELENOMETHIONINE (MSEap)
3aq: SELENOMETHIONINE (MSEaq)
3ar: SELENOMETHIONINE (MSEar)
3as: SELENOMETHIONINE (MSEas)
3at: SELENOMETHIONINE (MSEat)
3au: SELENOMETHIONINE (MSEau)
3av: SELENOMETHIONINE (MSEav)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ACY
2
Ligand/Ion
ACETIC ACID
2
EDO
7
Ligand/Ion
1,2-ETHANEDIOL
3
MSE
48
Mod. Amino Acid
SELENOMETHIONINE
4
ZN
5
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:124 , HIS B:125 , HOH B:625 , HOH B:628 , GLU H:124 , HIS H:125 , HOH H:618
BINDING SITE FOR RESIDUE ZN B 601
02
AC2
SOFTWARE
GLU D:124 , HIS D:125 , GLU E:124 , HIS E:125 , HOH E:619 , HOH E:638 , HOH E:661
BINDING SITE FOR RESIDUE ZN E 602
03
AC3
SOFTWARE
ASP G:127 , HOH G:610
BINDING SITE FOR RESIDUE ZN G 603
04
AC4
SOFTWARE
GLU B:9 , GLU B:12 , GLU B:13 , HOH B:661
BINDING SITE FOR RESIDUE ZN B 604
05
AC5
SOFTWARE
ASP G:127 , HOH G:627 , HOH G:654 , GLU H:109
BINDING SITE FOR RESIDUE ZN H 605
06
AC6
SOFTWARE
VAL D:74 , PHE D:78 , ARG D:79 , GLY D:80 , ARG D:81 , GLY D:82 , ILE D:83 , ALA D:84
BINDING SITE FOR RESIDUE EDO D 608
07
AC7
SOFTWARE
ASP E:63 , LYS F:37 , HIS F:40 , ASP F:41 , LEU F:44 , GLY F:61 , TYR F:62
BINDING SITE FOR RESIDUE EDO F 609
08
AC8
SOFTWARE
VAL F:74 , HOH F:635
BINDING SITE FOR RESIDUE EDO F 610
09
AC9
SOFTWARE
HOH A:216 , ASP B:127 , HOH G:668 , HIS H:125 , ASP H:127
BINDING SITE FOR RESIDUE EDO H 611
10
BC1
SOFTWARE
VAL F:114 , TYR F:118 , HOH F:673 , HOH F:686
BINDING SITE FOR RESIDUE EDO F 612
11
BC2
SOFTWARE
MSE H:117
BINDING SITE FOR RESIDUE EDO H 613
12
BC3
SOFTWARE
TRP E:27 , ARG E:134 , ARG F:66 , LYS F:102
BINDING SITE FOR RESIDUE EDO E 614
13
BC4
SOFTWARE
LYS G:102 , TRP H:27 , ARG H:134
BINDING SITE FOR RESIDUE ACY H 606
14
BC5
SOFTWARE
ASP A:63 , LYS B:37 , HIS B:40 , ASP B:41 , GLY B:61 , TYR B:62 , HOH B:609 , HOH B:615
BINDING SITE FOR RESIDUE ACY B 607
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: GNAT (A:1-139,B:1-141,C:1-139,D:1-141,E:...)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
GNAT
PS51186
Gcn5-related N-acetyltransferase (GNAT) domain profile.
YPEA_SHIFL
1-141
8
A:1-139
B:1-141
C:1-139
D:1-141
E:1-140
F:1-140
G:1-138
H:1-140
[
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Exons
(0, 0)
Info
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Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
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Sorry, no Info available
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CATH Domains
(1, 8)
Info
all CATH domains
1a: CATH_2pdoA01 (A:0-123)
1b: CATH_2pdoC01 (C:0-123)
1c: CATH_2pdoD01 (D:0-123)
1d: CATH_2pdoF01 (F:0-123)
1e: CATH_2pdoB01 (B:2-123)
1f: CATH_2pdoE01 (E:2-123)
1g: CATH_2pdoG01 (G:2-123)
1h: CATH_2pdoH01 (H:2-123)
View:
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(
)
(
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(
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(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Aminopeptidase
(284)
Homologous Superfamily
:
[code=3.40.630.30, no name defined]
(126)
2457t (Shigella flexneri 2a str)
(1)
1a
2pdoA01
A:0-123
1b
2pdoC01
C:0-123
1c
2pdoD01
D:0-123
1d
2pdoF01
F:0-123
1e
2pdoB01
B:2-123
1f
2pdoE01
E:2-123
1g
2pdoG01
G:2-123
1h
2pdoH01
H:2-123
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Acetyltransf_1_2pdoH01 (H:48-124)
1b: PFAM_Acetyltransf_1_2pdoH02 (H:48-124)
1c: PFAM_Acetyltransf_1_2pdoH03 (H:48-124)
1d: PFAM_Acetyltransf_1_2pdoH04 (H:48-124)
1e: PFAM_Acetyltransf_1_2pdoH05 (H:48-124)
1f: PFAM_Acetyltransf_1_2pdoH06 (H:48-124)
1g: PFAM_Acetyltransf_1_2pdoH07 (H:48-124)
1h: PFAM_Acetyltransf_1_2pdoH08 (H:48-124)
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Clans
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(
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Organisms
(
)
(
)
Clan
:
Acetyltrans
(109)
Family
:
Acetyltransf_1
(58)
Shigella flexneri
(1)
1a
Acetyltransf_1-2pdoH01
H:48-124
1b
Acetyltransf_1-2pdoH02
H:48-124
1c
Acetyltransf_1-2pdoH03
H:48-124
1d
Acetyltransf_1-2pdoH04
H:48-124
1e
Acetyltransf_1-2pdoH05
H:48-124
1f
Acetyltransf_1-2pdoH06
H:48-124
1g
Acetyltransf_1-2pdoH07
H:48-124
1h
Acetyltransf_1-2pdoH08
H:48-124
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