2P5V - JenaLib

Asym./Biol. Unit - manually (Jmol Viewer)

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF TRANSCRIPTIONAL REGULATOR NMB0573 FROM NEISSERIA MENINGITIDIS

Authors :   J. Ren, S. Sainsbury, R. J. Owens, Oxford Protein Production Facili

Date :   16 Mar 07 (Deposition) - 03 Apr 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.99

Chains :   Asym./Biol. Unit : A,B,C,D,E,F,G,H

Keywords :   Nmb0573, Transcriptional Regulator, Lrp/Asnc-Family, Structural Genomics, Structural And Functional Analysis Of N. Meninigitidis Transcriptional Regulators, Oxford Protein Production Facility, Oppf, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   J. Ren, S. Sainsbury, S. E. Combs, R. G. Capper, P. W. Jordan, N. S. Berrow, D. K. Stammers, N. J. Saunders, R. J. Owens
The Structure And Transcriptional Analysis Of A Global Regulator From Neisseria Meningitidis.
J. Biol. Chem. V. 282 14655 2007
PubMed-ID: 17374605 | Reference-DOI: 10.1074/JBC.M701082200

Molecule 1 - TRANSCRIPTIONAL REGULATOR, LRP/ASNC FAMILY
	Chains	:	A, B, C, D, E, F, G, H
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	OPPF2146
	Expression System Strain	:	B834(DE3)
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NMB0573
	Organism Scientific	:	NEISSERIA MENINGITIDIS
	Organism Taxid	:	122586
	Strain	:	MC58

		1	2	3	4	5	6	7	8
Asymmetric/Biological Unit	:	A	B	C	D	E	F	G	H

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (4, 35)

No.	Name	Count	Type	Full Name
1	CA	8	Ligand/Ion	CALCIUM ION
2	CL	10	Ligand/Ion	CHLORIDE ION
3	GOL	8	Ligand/Ion	GLYCEROL
4	MSE	9	Mod. Amino Acid	SELENOMETHIONINE

Asymmetric Unit (26, 26)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	ASP A:136 , HOH A:285 , GLU C:105 , ASP C:107 , HOH C:1126	BINDING SITE FOR RESIDUE CA C 1001
02	AC2	SOFTWARE	ASP C:136 , HOH C:1161 , GLU E:105 , ASP E:107 , HOH E:293	BINDING SITE FOR RESIDUE CA C 1002
03	AC3	SOFTWARE	ASP E:136 , GLU G:105 , ASP G:107	BINDING SITE FOR RESIDUE CA G 1003
04	AC4	SOFTWARE	GLU A:105 , ASP A:107 , ASP G:136	BINDING SITE FOR RESIDUE CA A 1004
05	AC5	SOFTWARE	GLU F:105 , ASP F:107 , HOH F:376 , HOH F:993 , HOH F:1099 , HOH F:1300 , ASP H:136	BINDING SITE FOR RESIDUE CA F 1005
06	AC6	SOFTWARE	ASP B:136 , HOH B:209 , GLU H:105 , ASP H:107 , HOH H:545 , HOH H:1307	BINDING SITE FOR RESIDUE CA H 1006
07	AC7	SOFTWARE	GLU D:105 , ASP D:107 , HOH D:1047 , ASP F:136 , HOH F:251 , HOH F:442	BINDING SITE FOR RESIDUE CA D 1007
08	AC8	SOFTWARE	GLU B:105 , ASP B:107 , HOH B:539 , ASP D:136 , HOH D:421	BINDING SITE FOR RESIDUE CA B 1008
09	AC9	SOFTWARE	MSE C:117 , HOH C:676 , ASP F:116 , MSE F:117	BINDING SITE FOR RESIDUE CL C 1009
10	BC1	SOFTWARE	MSE A:117 , HOH A:513 , ASP D:116 , MSE D:117 , HOH D:661	BINDING SITE FOR RESIDUE CL A 1011
11	BC2	SOFTWARE	MSE B:117 , HOH B:530 , ASP G:116 , MSE G:117 , HOH G:202	BINDING SITE FOR RESIDUE CL B 1012
12	BC3	SOFTWARE	ARG D:83 , TYR D:108	BINDING SITE FOR RESIDUE CL D 1014
13	BC4	SOFTWARE	ARG B:83 , TYR B:108 , HOH B:537	BINDING SITE FOR RESIDUE CL B 1015
14	BC5	SOFTWARE	ARG C:83 , TYR C:108	BINDING SITE FOR RESIDUE CL C 1016
15	BC6	SOFTWARE	ASN E:20 , ARG E:22 , CL F:1018	BINDING SITE FOR RESIDUE CL E 1017
16	BC7	SOFTWARE	CL E:1017 , GLN F:54 , TYR F:55	BINDING SITE FOR RESIDUE CL F 1018
17	BC8	SOFTWARE	HOH E:296 , ASN F:20 , GLY F:21 , ARG F:22	BINDING SITE FOR RESIDUE CL F 1019
18	BC9	SOFTWARE	MSE E:117 , MSE H:117 , HOH H:1250	BINDING SITE FOR RESIDUE CL E 1020
19	CC1	SOFTWARE	MSE A:117 , ASN A:118 , SER A:121 , HOH A:586 , VAL D:142 , LEU D:143	BINDING SITE FOR RESIDUE GOL A 901
20	CC2	SOFTWARE	GLU B:62 , GLY B:67 , HOH B:1141 , HOH B:1221 , HOH B:1255 , HOH B:1276 , ASN G:118	BINDING SITE FOR RESIDUE GOL B 902
21	CC3	SOFTWARE	ARG C:73 , LEU C:109 , HOH C:677 , ARG D:73 , THR D:106	BINDING SITE FOR RESIDUE GOL D 903
22	CC4	SOFTWARE	ARG E:73 , GLN E:138 , SER E:139 , SER E:140 , HOH E:643 , HOH E:1164 , GLY F:104	BINDING SITE FOR RESIDUE GOL E 905
23	CC5	SOFTWARE	ASN B:118 , GLU G:62 , GLY G:67 , HOH G:360 , HOH G:708 , HOH G:1202	BINDING SITE FOR RESIDUE GOL G 906
24	CC6	SOFTWARE	ASN E:118 , HOH E:363 , HOH E:694 , GLU H:62 , GLY H:67 , HOH H:329	BINDING SITE FOR RESIDUE GOL E 907
25	CC7	SOFTWARE	GLN A:3 , LEU A:4 , LEU A:6 , LEU A:157 , HOH A:500 , HOH A:1029 , SER B:63	BINDING SITE FOR RESIDUE GOL A 904
26	CC8	SOFTWARE	GLY E:67 , HOH E:603 , ASN H:118	BINDING SITE FOR RESIDUE GOL E 909

(no "SS Bond" information available for 2P5V)

(no "Cis Peptide Bond" information available for 2P5V)

(no "SAP(SNP)/Variant" information available for 2P5V)

(no "PROSITE Motif" information available for 2P5V)

(no "Exon" information available for 2P5V)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:156
 aligned with Q9K0L9_NEIMB | Q9K0L9 from UniProtKB/TrEMBL  Length:187

    Alignment length:156
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179      
         Q9K0L9_NEIMB    30 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 185
               SCOP domains d2p5va1 A:3-65 automated matches                               d2p5va2 A:66-158 automated matches                                                            SCOP domains
               CATH domains ----2p5vA01 A:7-58                                      ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee....hhhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhh......eeeeeeeeeeeeeee.....hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p5v A   3 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDmNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 158
                                    12        22        32        42        52        62        72        82        92       102       112    |  122       132       142       152      
                                                                                                                                            117-MSE

Chain B from PDB  Type:PROTEIN  Length:156
 aligned with Q9K0L9_NEIMB | Q9K0L9 from UniProtKB/TrEMBL  Length:187

    Alignment length:156
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179      
         Q9K0L9_NEIMB    30 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 185
               SCOP domains d2p5vb1 B:3-65 automated matches                               d2p5vb2 B:66-158 automated matches                                                            SCOP domains
               CATH domains ----2p5vB01 B:7-58                                      ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee....hhhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhh......eeeeeeeeeeeeeee.....hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p5v B   3 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDmNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 158
                                    12        22        32        42        52        62        72        82        92       102       112    |  122       132       142       152      
                                                                                                                                            117-MSE

Chain C from PDB  Type:PROTEIN  Length:154
 aligned with Q9K0L9_NEIMB | Q9K0L9 from UniProtKB/TrEMBL  Length:187

    Alignment length:154
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181    
         Q9K0L9_NEIMB    32 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 185
               SCOP domains d2p5vc1 C:5-65 automated matches                             d2p5vc2 C:66-158 automated matches                                                            SCOP domains
               CATH domains --2p5vC01 C:7-58                                      ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee....hhhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhh......eeeeeeeeeeeeeee.....hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p5v C   5 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDmNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 158
                                    14        24        34        44        54        64        74        84        94       104       114  |    124       134       144       154    
                                                                                                                                          117-MSE

Chain D from PDB  Type:PROTEIN  Length:156
 aligned with Q9K0L9_NEIMB | Q9K0L9 from UniProtKB/TrEMBL  Length:187

    Alignment length:156
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179      
         Q9K0L9_NEIMB    30 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 185
               SCOP domains d2p5vd1 D:3-65 automated matches                               --------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----2p5vD01 D:7-58                                      ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee....hhhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhh......eeeeeeeeeeeeeee.....hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p5v D   3 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDmNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 158
                                    12        22        32        42        52        62        72        82        92       102       112    |  122       132       142       152      
                                                                                                                                            117-MSE

Chain E from PDB  Type:PROTEIN  Length:156
 aligned with Q9K0L9_NEIMB | Q9K0L9 from UniProtKB/TrEMBL  Length:187

    Alignment length:156
                                    39        49        59        69        79        89        99       109       119       129       139       149       159       169       179      
         Q9K0L9_NEIMB    30 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 185
               SCOP domains d2p5ve1 E:3-65 automated matches                               d2p5ve2 E:66-158 automated matches                                                            SCOP domains
               CATH domains ----2p5vE01 E:7-58                                      ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee....hhhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhh......eeeeeeeeeeeeeee.....hhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2p5v E   3 QLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDmNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 158
                                    12        22        32        42        52        62        72        82        92       102       112    |  122       132       142       152      
                                                                                                                                            117-MSE

Chain F from PDB  Type:PROTEIN  Length:154
 aligned with Q9K0L9_NEIMB | Q9K0L9 from UniProtKB/TrEMBL  Length:187

    Alignment length:154
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181    
         Q9K0L9_NEIMB    32 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 185
               SCOP domains d2p5vf1 F:5-65 automated matches                             d2p5vf2 F:66-158 automated matches                                                            SCOP domains
               CATH domains --2p5vF01 F:7-58                                      ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhhh.hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee....hhhhhhhhhhhh...eeeeeee.....eeeeeee.hhhhhhhhhhhh......eeeeeeeeeeeeeee.....hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p5v F   5 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDmNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 158
                                    14        24        34        44        54        64        74        84        94       104       114  |    124       134       144       154    
                                                                                                                                          117-MSE

Chain G from PDB  Type:PROTEIN  Length:158
 aligned with Q9K0L9_NEIMB | Q9K0L9 from UniProtKB/TrEMBL  Length:187

    Alignment length:158
                                    37        47        57        67        77        87        97       107       117       127       137       147       157       167       177        
         Q9K0L9_NEIMB    28 MPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 185
               SCOP domains d2p5vg1 G:1-65 automated matches                                 d2p5vg2 G:66-158 automated matches                                                            SCOP domains
               CATH domains ------2p5vG01 G:7-58                                      ---------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee....hhhhhhhhhhhhh..eeeeeee.....eeeeeee.hhhhhhhhhhhh......eeeeeeeeeeeeeee.....hhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p5v G   1 mPQLTLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDmNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 158
                            |       10        20        30        40        50        60        70        80        90       100       110      |120       130       140       150        
                            1-MSE                                                                                                             117-MSE

Chain H from PDB  Type:PROTEIN  Length:154
 aligned with Q9K0L9_NEIMB | Q9K0L9 from UniProtKB/TrEMBL  Length:187

    Alignment length:154
                                    41        51        61        71        81        91       101       111       121       131       141       151       161       171       181    
         Q9K0L9_NEIMB    32 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDMNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 185
               SCOP domains d2p5vh1 H:5-65 automated matches                             d2p5vh2 H:66-158 automated matches                                                            SCOP domains
               CATH domains --2p5vH01 H:7-58                                      ---------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) -HTH_24-2p5vH09 H:6-53                           ------------------AsnC_trans_reg-2p5vH01 H:72-145                                           ------------- Pfam domains (1)
           Pfam domains (2) -HTH_24-2p5vH10 H:6-53                           ------------------AsnC_trans_reg-2p5vH02 H:72-145                                           ------------- Pfam domains (2)
           Pfam domains (3) -HTH_24-2p5vH11 H:6-53                           ------------------AsnC_trans_reg-2p5vH03 H:72-145                                           ------------- Pfam domains (3)
           Pfam domains (4) -HTH_24-2p5vH12 H:6-53                           ------------------AsnC_trans_reg-2p5vH04 H:72-145                                           ------------- Pfam domains (4)
           Pfam domains (5) -HTH_24-2p5vH13 H:6-53                           ------------------AsnC_trans_reg-2p5vH05 H:72-145                                           ------------- Pfam domains (5)
           Pfam domains (6) -HTH_24-2p5vH14 H:6-53                           ------------------AsnC_trans_reg-2p5vH06 H:72-145                                           ------------- Pfam domains (6)
           Pfam domains (7) -HTH_24-2p5vH15 H:6-53                           ------------------AsnC_trans_reg-2p5vH07 H:72-145                                           ------------- Pfam domains (7)
           Pfam domains (8) -HTH_24-2p5vH16 H:6-53                           ------------------AsnC_trans_reg-2p5vH08 H:72-145                                           ------------- Pfam domains (8)
         Sec.struct. author ..hhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhh..eeeeeeee.hhhhh..eeeeeeeee....hhhhhhhhhhh....eeeeeee.....eeeeeee.hhhhhhhhhhhh......eeeeeeeeeeeeeee.....hhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2p5v H   5 TLDKTDIKILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGIVRQYAALLSPESVNLGLQAFIRVSIRKAKDAREDFAASVRKWPEVLSCFALTGETDYLLQAFFTDmNAFSHFVLDTLLSHHGVQDAQSSFVLKEIKHTTSLPLNHLL 158
                                    14        24        34        44        54        64        74        84        94       104       114  |    124       134       144       154    
                                                                                                                                          117-MSE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric/Biological Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: All alpha proteins (14657)

Fold: DNA/RNA-binding 3-helical bundle (1299)

Superfamily: Winged helix DNA-binding domain (576)

Family: automated matches (118)

Protein domain: automated matches (118)

Neisseria meningitidis [TaxId: 122586] (3)

1a	d2p5va1	A:3-65
1b	d2p5vb1	B:3-65
1c	d2p5vc1	C:5-65
1d	d2p5vd1	D:3-65
1e	d2p5ve1	E:3-65
1f	d2p5vf1	F:5-65
1g	d2p5vg1	G:1-65
1h	d2p5vh1	H:5-65

Class: Alpha and beta proteins (a+b) (23004)

Fold: Ferredoxin-like (1795)

Superfamily: Dimeric alpha+beta barrel (122)

Family: automated matches (41)

Protein domain: automated matches (41)

Neisseria meningitidis [TaxId: 122586] (3)

2a	d2p5va2	A:66-158
2b	d2p5vb2	B:66-158
2c	d2p5vc2	C:66-158
2d	d2p5ve2	E:66-158
2e	d2p5vf2	F:66-158
2f	d2p5vg2	G:66-158
2g	d2p5vh2	H:66-158

Asymmetric/Biological Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Mainly Alpha (13335)

Architecture: Orthogonal Bundle (10391)

Topology: Arc Repressor Mutant, subunit A (1030)

Homologous Superfamily: 'winged helix' repressor DNA binding domain (507)

Neisseria meningitidis mc58. Organism_taxid: 122586. Strain: mc58. (3)

1a	2p5vA01	A:7-58
1b	2p5vB01	B:7-58
1c	2p5vC01	C:7-58
1d	2p5vD01	D:7-58
1e	2p5vE01	E:7-58
1f	2p5vF01	F:7-58
1g	2p5vG01	G:7-58
1h	2p5vH01	H:7-58

Asymmetric/Biological Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: Dim_A_B_barrel (36)

Family: AsnC_trans_reg (8)

Neisseria meningitidis serogroup B (3)

1a	AsnC_trans_reg-2p5vH01	H:72-145
1b	AsnC_trans_reg-2p5vH02	H:72-145
1c	AsnC_trans_reg-2p5vH03	H:72-145
1d	AsnC_trans_reg-2p5vH04	H:72-145
1e	AsnC_trans_reg-2p5vH05	H:72-145
1f	AsnC_trans_reg-2p5vH06	H:72-145
1g	AsnC_trans_reg-2p5vH07	H:72-145
1h	AsnC_trans_reg-2p5vH08	H:72-145

Clan: HTH (544)

Family: HTH_24 (3)

Neisseria meningitidis serogroup B (3)

2a	HTH_24-2p5vH09	H:6-53
2b	HTH_24-2p5vH10	H:6-53
2c	HTH_24-2p5vH11	H:6-53
2d	HTH_24-2p5vH12	H:6-53
2e	HTH_24-2p5vH13	H:6-53
2f	HTH_24-2p5vH14	H:6-53
2g	HTH_24-2p5vH15	H:6-53
2h	HTH_24-2p5vH16	H:6-53

Asymmetric/Biological Unit(hide GO term definitions)

Chain A,B,C,D,E,F,G,H (Q9K0L9_NEIMB | Q9K0L9)

molecular function
	GO:0003677	DNA binding	Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0043565	sequence-specific DNA binding	Interacting selectively and non-covalently with DNA of a specific nucleotide composition, e.g. GC-rich DNA binding, or with a specific sequence motif or type of DNA e.g. promotor binding or rDNA binding.
	GO:0003700	transcription factor activity, sequence-specific DNA binding	Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
biological process
	GO:0006355	regulation of transcription, DNA-templated	Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
	GO:0006351	transcription, DNA-templated	The cellular synthesis of RNA on a template of DNA.
cellular component
	GO:0005622	intracellular	The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.

Asymmetric/Biological Unit
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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2p5v)

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	2p5v
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	Q9K0L9_NEIMB \| Q9K0L9	:	2p6s 2p6t

(no "Related Entries Specified in the PDB File" available for 2P5V)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 35)

Sites (26, 26)

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

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Exons (0, 0)

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SCOP Domains (2, 15)

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