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(-) Description

Title :  CRYSTAL STRUCTURE OF A PHOU-LIKE PROTEIN (SO_3770) FROM SHEWANELLA ONEIDENSIS MR-1 AT 2.00 A RESOLUTION
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  19 Jan 07  (Deposition) - 06 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  B,C  (3x)
Biol. Unit 2:  A  (4x)
Biol. Unit 3:  A  (6x)
Keywords :  Structural Genomics, Joint Center For Structural Genomics, Jcsg, Protein Structure Initiative, Psi-2, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Np_719307. 1 From Shewanella Oneidensis At 2. 00 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: SPEEDET
    Expression System Strain: HK100
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_719307.1, SO_3770
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 211586
    Strain: MR-1

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (3x):  BC
Biological Unit 2 (4x): A  
Biological Unit 3 (6x): A  

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 22)

Asymmetric Unit (3, 22)
No.NameCountTypeFull Name
1CL3Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 39)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL9Ligand/IonGLYCEROL
3MSE30Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 24)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL4Ligand/IonGLYCEROL
3MSE20Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 36)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2GOL6Ligand/IonGLYCEROL
3MSE30Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (7, 7)

Asymmetric Unit (7, 7)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG B:105 , PHE B:197 , HOH B:229BINDING SITE FOR RESIDUE CL B 227
2AC2SOFTWAREARG A:105BINDING SITE FOR RESIDUE CL A 227
3AC3SOFTWAREARG C:105 , HOH C:232BINDING SITE FOR RESIDUE CL C 227
4AC4SOFTWAREARG B:105 , GLY B:108 , ARG B:109 , ARG B:180 , TYR B:199BINDING SITE FOR RESIDUE GOL B 228
5AC5SOFTWARELYS A:98 , ASP A:101 , ILE A:102 , ARG A:105 , TRP A:204 , HOH A:254 , HOH A:305BINDING SITE FOR RESIDUE GOL A 228
6AC6SOFTWAREARG C:105 , ARG C:109 , ARG C:180 , TYR C:199BINDING SITE FOR RESIDUE GOL C 228
7AC7SOFTWARELYS C:98 , ASP C:101 , ARG C:105 , ARG C:180 , TRP C:204 , HOH C:277BINDING SITE FOR RESIDUE GOL C 229

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OLT)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OLT)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OLT)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OLT)

(-) Exons   (0, 0)

(no "Exon" information available for 2OLT)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:214
 aligned with Q8EAX1_SHEON | Q8EAX1 from UniProtKB/TrEMBL  Length:226

    Alignment length:214
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
         Q8EAX1_SHEON    13 SPIKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLADLAERVGSRLELMLARV 226
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2olt A  13 SPIKPLQEHmDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFmPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKmINELDIIEEDTDDLQIQLRRQLFALESELNPVDVmFLYKTIEWVGGLADLAERVGSRLELmLARV 226
                                    22        32        42        52        62        72     |  82        92       102       112       122       132       142       152       162       172       182       192   |   202       212       222    
                                    22-MSE                                                  78-MSE                                                                            161-MSE                            196-MSE                   222-MSE


Chain B from PDB  Type:PROTEIN  Length:211
 aligned with Q8EAX1_SHEON | Q8EAX1 from UniProtKB/TrEMBL  Length:226

    Alignment length:213
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223   
         Q8EAX1_SHEON    14 PIKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLADLAERVGSRLELMLARV 226
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2olt B  14 PIKPLQEHmDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFmPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEA--RGREVDFVAKmINELDIIEEDTDDLQIQLRRQLFALESELNPVDVmFLYKTIEWVGGLADLAERVGSRLELmLARV 226
                                    23        33        43        53        63        73    |   83        93       103       113       123       133       143    |  153       163       173       183       193  |    203       213       223   
                                   22-MSE                                                  78-MSE                                                               148  |       161-MSE                            196-MSE                   222-MSE
                                                                                                                                                                   151                                                                           


Chain C from PDB  Type:PROTEIN  Length:217
 aligned with Q8EAX1_SHEON | Q8EAX1 from UniProtKB/TrEMBL  Length:226

    Alignment length:219
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217         
         Q8EAX1_SHEON     8 GVFAKSPIKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLADLAERVGSRLELMLARV 226
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) PhoU_div-2oltC01 C:8-225                                                                                                                                                                                                  - Pfam domains (1)
           Pfam domains (2) PhoU_div-2oltC02 C:8-225                                                                                                                                                                                                  - Pfam domains (2)
           Pfam domains (3) PhoU_div-2oltC03 C:8-225                                                                                                                                                                                                  - Pfam domains (3)
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2olt C   8 GVFAKSPIKPLQEHmDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTL--GLFmPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKmINELDIIEEDTDDLQIQLRRQLFALESELNPVDVmFLYKTIEWVGGLADLAERVGSRLELmLARV 226
                                    17    |   27        37        47        57        67    |  |77|       87        97       107       117       127       137       147       157   |   167       177       187       197       207       217    |    
                                         22-MSE                                            72 75  |                                                                                161-MSE                            196-MSE                   222-MSE
                                                                                                 78-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2OLT)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OLT)

(-) Pfam Domains  (1, 3)

Asymmetric Unit
(-)
Clan: PhoU (6)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q8EAX1_SHEON | Q8EAX1)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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        Q8EAX1_SHEON | Q8EAX1: 2iiu

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