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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE PHOU-LIKE PHOSPHATE REGULATORY PROTEIN (NP_719307.1) FROM SHEWANELLA ONEIDENSIS MR-1 AT 2.28 A RESOLUTION.
 
Authors :  Joint Center For Structural Genomics (Jcsg)
Date :  28 Sep 06  (Deposition) - 17 Oct 06  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.28
Chains :  Asym. Unit :  A,B,C
Biol. Unit 1:  A  (6x)
Biol. Unit 2:  B,C  (3x)
Biol. Unit 3:  A (6x),B (6x),C (6x)
Keywords :  Np_719307. 1, Conserved Hypothetical Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Joint Center For Structural Genomics, Jcsg, Structural Genomics-Unknown Function Complex (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Joint Center For Structural Genomics (Jcsg)
Crystal Structure Of Conserved Hypothetical Protein (Np_719307. 1) From Shewanella Oneidensis Mr-1 At 2. 28 A Resolution
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - HYPOTHETICAL PROTEIN
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: NP_719307.1
    Organism Scientific: SHEWANELLA ONEIDENSIS
    Organism Taxid: 70863

 Structural Features

(-) Chains, Units

  123
Asymmetric Unit : ABC
Biological Unit 1 (6x): A  
Biological Unit 2 (3x):  BC
Biological Unit 3 (6x): A (6x)B (6x)C (6x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 19)

Asymmetric Unit (2, 19)
No.NameCountTypeFull Name
1EDO4Ligand/Ion1,2-ETHANEDIOL
2MSE15Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (2, 48)
No.NameCountTypeFull Name
1EDO18Ligand/Ion1,2-ETHANEDIOL
2MSE30Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (2, 33)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2MSE30Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (2, 48)
No.NameCountTypeFull Name
1EDO18Ligand/Ion1,2-ETHANEDIOL
2MSE30Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:105 , GLY A:108 , ARG A:109 , HOH A:257 , HOH A:275 , HOH A:304 , HOH A:315BINDING SITE FOR RESIDUE EDO A 227
2AC2SOFTWAREALA A:212 , GLU A:213 , GLY A:216 , HOH A:272BINDING SITE FOR RESIDUE EDO A 228
3AC3SOFTWAREGLY B:108 , ARG B:180 , HOH B:252BINDING SITE FOR RESIDUE EDO B 227
4AC4SOFTWAREMSE A:78 , VAL A:80 , GLU A:81 , ARG A:82BINDING SITE FOR RESIDUE EDO A 229

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2IIU)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2IIU)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2IIU)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2IIU)

(-) Exons   (0, 0)

(no "Exon" information available for 2IIU)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:208
 aligned with Q8EAX1_SHEON | Q8EAX1 from UniProtKB/TrEMBL  Length:226

    Alignment length:214
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
         Q8EAX1_SHEON    13 SPIKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLADLAERVGSRLELMLARV 226
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhh---......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh---.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iiu A  13 SPIKPLQEHmDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLT---GLFmPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLE---RGREVDFVAKmINELDIIEEDTDDLQIQLRRQLFALESELNPVDVmFLYKTIEWVGGLADLAERVGSRLELmLARV 226
                                    22        32        42        52        62        |-  |  |  82        92       102       112       122       132       142    |  152       162       172       182       192   |   202       212       222    
                                    22-MSE                                           71  75  |                                                                  147 151       161-MSE                            196-MSE                   222-MSE
                                                                                            78-MSE                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:209
 aligned with Q8EAX1_SHEON | Q8EAX1 from UniProtKB/TrEMBL  Length:226

    Alignment length:214
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222    
         Q8EAX1_SHEON    13 SPIKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLADLAERVGSRLELMLARV 226
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..-.-.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.---.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iiu B  13 SPIKPLQEHmDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTL-S-LFmPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLE---RGREVDFVAKmINELDIIEEDTDDLQIQLRRQLFALESELNPVDVmFLYKTIEWVGGLADLAERVGSRLELmLARV 226
                                    22        32        42        52        62        72 | | |  82        92       102       112       122       132       142    |  152       162       172       182       192   |   202       212       222    
                                    22-MSE                                            72 | | |                                                                  147 151       161-MSE                            196-MSE                   222-MSE
                                                                                        74 | |                                                                                                                                                    
                                                                                          76 |                                                                                                                                                    
                                                                                            78-MSE                                                                                                                                                


Chain C from PDB  Type:PROTEIN  Length:214
 aligned with Q8EAX1_SHEON | Q8EAX1 from UniProtKB/TrEMBL  Length:226

    Alignment length:220
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226
         Q8EAX1_SHEON     7 LGVFAKSPIKPLQEHMDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTLPSGLFMPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEAGFRGREVDFVAKMINELDIIEEDTDDLQIQLRRQLFALESELNPVDVMFLYKTIEWVGGLADLAERVGSRLELMLARV 226
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ........hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhh..----....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh--hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2iiu C   7 LGVFAKSPIKPLQEHmDKVYDCASLLVPFFEATITGNWDDAVQIRKQISLAEKQGDSLKREIRLTL----FmPVERTDLLELLTQQDKIANKAKDISGRVIGRQLLIPQALQVPFIAYLQRCIDAVGLAQQVINELDDLLEA--RGREVDFVAKmINELDIIEEDTDDLQIQLRRQLFALESELNPVDVmFLYKTIEWVGGLADLAERVGSRLELmLARV 226
                                    16     |  26        36        46        56        66     |   -||      86        96       106       116       126       136       146 |  |  156    |  166       176       186       196       206       216     | 226
                                          22-MSE                                            72   77|                                                                   148  |       161-MSE                            196-MSE                   222-MSE
                                                                                                  78-MSE                                                                  151
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2IIU)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2IIU)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2IIU)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C   (Q8EAX1_SHEON | Q8EAX1)
molecular function
    GO:0003674    molecular_function    Elemental activities, such as catalysis or binding, describing the actions of a gene product at the molecular level. A given gene product may exhibit one or more molecular functions.
biological process
    GO:0008150    biological_process    Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
cellular component
    GO:0005575    cellular_component    The part of a cell, extracellular environment or virus in which a gene product is located. A gene product may be located in one or more parts of a cell and its location may be as specific as a particular macromolecular complex, that is, a stable, persistent association of macromolecules that function together.

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        Q8EAX1_SHEON | Q8EAX1: 2olt

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