2OH7 - JenaLib

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Title :   THE CRYSTAL STRUCTURE OF CYPOVIRUS POLYHEDRA CONTAINING THE HUMAN ZIP-KINASE

Authors :   F. Coulibaly, E. Chiu, K. Ikeda, S. Gutmann, P. W. Haebel, C. Schulze- Briese, H. Mori, P. Metcalf

Date :   09 Jan 07 (Deposition) - 06 Mar 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.45

Chains :   Asym. Unit : A
Biol. Unit 1: A  (12x)

Keywords :   Beta Sandwich, Intracellular Crystal, Nucleotide Binding, Structural Protein, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Coulibaly, E. Chiu, K. Ikeda, S. Gutmann, P. W. Haebel, C. Schulze-Briese, H. Mori, P. Metcalf
The Molecular Organization Of Cypovirus Polyhedra.
Nature V. 446 97 2007
PubMed-ID: 17330045 | Reference-DOI: 10.1038/NATURE05628
(for further references see the PDB file header)

Molecule 1 - POLYHEDRIN
	Chains	:	A
	Engineered	:	YES
	Expression System	:	SPODOPTERA FRUGIPERDA
	Expression System Common	:	FALL ARMYWORM
	Expression System Strain	:	SF21 (IPLB-SF21AE)
	Expression System Taxid	:	7108
	Expression System Vector Type	:	BACULOVIRUS
	Gene	:	POLYHEDIN
	Mutation	:	YES
	Organism Common	:	DOMESTIC SILKWORM
	Organism Scientific	:	BOMBYX MORI
	Organism Taxid	:	7091
	Strain	:	CPV1
	Synonym	:	C-POLYHEDRIN

		1
Asymmetric Unit	:	A
Biological Unit 1 (12x)	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (6, 7)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	CL	1	Ligand/Ion	CHLORIDE ION
4	CTP	1	Ligand/Ion	CYTIDINE-5'-TRIPHOSPHATE
5	GTP	1	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
6	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (4, 48)

No.	Name	Count	Type	Full Name
1	ACE	12	Mod. Amino Acid	ACETYL GROUP
2	ATP	12	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	CTP	12	Ligand/Ion	CYTIDINE-5'-TRIPHOSPHATE
5	GTP	12	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
6	MG	-1	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:2 , LEU A:31 , HOH A:354	BINDING SITE FOR RESIDUE CL A 249
2	AC2	SOFTWARE	GLY A:74 , SER A:79 , CTP A:254	BINDING SITE FOR RESIDUE MG A 250
3	AC3	SOFTWARE	ATP A:253	BINDING SITE FOR RESIDUE MG A 251
4	AC4	SOFTWARE	ASN A:9 , ARG A:10 , ARG A:18 , ASP A:156 , HIS A:170 , TYR A:172 , ASN A:173 , LYS A:184 , ATP A:253 , HOH A:283 , HOH A:284	BINDING SITE FOR RESIDUE GTP A 252
5	AC5	SOFTWARE	TYR A:25 , LYS A:152 , LYS A:154 , ARG A:155 , ASP A:156 , GLY A:157 , ILE A:159 , LYS A:184 , MG A:251 , GTP A:252 , HOH A:278 , HOH A:279	BINDING SITE FOR RESIDUE ATP A 253
6	AC6	SOFTWARE	HIS A:76 , ASN A:77 , ASP A:78 , SER A:79 , TYR A:80 , ASP A:81 , ASP A:96 , ARG A:98 , MG A:250 , HOH A:363 , HOH A:364 , HOH A:365	BINDING SITE FOR RESIDUE CTP A 254

(no "SS Bond" information available for 2OH7)

(no "Cis Peptide Bond" information available for 2OH7)

(no "SAP(SNP)/Variant" information available for 2OH7)

(no "PROSITE Motif" information available for 2OH7)

(no "Exon" information available for 2OH7)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:248
 aligned with O10693_CPVBM | O10693 from UniProtKB/TrEMBL  Length:248

    Alignment length:248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
         O10693_CPVBM     1 MADVAGTSNRDFRGREQRLFNSEQYNYNNSLNGEVSVWVYAYYSDGSVLVINKNSQYKVGISETFKALKEYRKGQHNDSYDEYEVNQSIYYPNGGDARKFHSNAKPRAIQIIFSPSVNVRTIKMAKGNAVSVPDEYLQRSHPWEATGIKYRKIKRDGEIVGYSHYFELPHEYNSISLAVSGVHKNPSSYNVGSAHNVMDVFQSCDLALRFCNRYWAELELVNHYISPNAYPYLDINNHSYGVALSNRQ 248
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -Cypo_polyhedrin-2oh7A01 A:2-248                                                                                                                                                                                                                         Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeee.eeeeee..............hhhhhhhhhhhhhh................eeeeee....hhhhheeeee........hhhhh.....hhhhheeeee..eeeeeeeeee........eeeeeee.............hhhhhhhhhhhheeeeeee.hhhhhhhhhhhhhh..ee.....ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oh7 A   1 xADVAGTSNRDFRGREQRLFNSEQYNYNSSLNGEVSVWVYAYYSDGSVLVINKNSQYKVGISETFKALKEYRKGQHNDSYDEYEVNQSIYYPNGGDARKFHSNAKPRAIQIIFSPSVNVRTIKMAKGNAVSVPDEYLQRSHPWEATGIKYRKIKRDGEIVGYSHYFELPHEYNSISLAVSGVHKNPSSYNVGSAHNVMDVFQSCDLALRFCNRYWAELELVNHYISPNAYPYLDINNHSYGVALSNRQ 248
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
                            |                                                                                                                                                                                                                                                       
                            1-ACE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2OH7)

(no "CATH Domain" information available for 2OH7)

Asymmetric Unit

Clans(

)

Families(

)

Organisms( (-)

)

Clan: no clan defined [family: Cypo_polyhedrin] (3)

Family: Cypo_polyhedrin (3)

Bombyx mori cytoplasmic polyhedrosis virus (BmCPV) (3)

Cypo_polyhedrin-2oh7A01

A:2-248

Asymmetric Unit(hide GO term definitions)

Chain A (O10693_CPVBM | O10693)


GO:0005524	ATP binding	Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO:0005525	GTP binding	Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO:0000166	nucleotide binding	Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2oh7)

Biological Unit
	Complete Structure
		Biological Unit 1	[ Jena3D ]

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Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 7)

Sites (6, 6)

SS Bonds (0, 0)

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