2OH5 - JenaLib

Title :   THE CRYSTAL STRUCTURE OF INFECTIOUS CYPOVIRUS POLYHEDRA

Authors :   F. Coulibaly, E. Chiu, K. Ikeda, S. Gutmann, P. W. Haebel, C. Schulze-Br H. Mori, P. Metcalf

Date :   09 Jan 07 (Deposition) - 06 Mar 07 (Release) - 13 Jul 11 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.98

Chains :   Asym. Unit : A
Biol. Unit 1: A  (12x)
Biol. Unit 2: A  (2x)
Biol. Unit 3: A  (3x)

Keywords :   Beta Barrel, Intracellular Crystal, Nucleotide Binding, Structural Protein, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   F. Coulibaly, E. Chiu, K. Ikeda, S. Gutmann, P. W. Haebel, C. Schulze-Briese, H. Mori, P. Metcalf
The Molecular Organization Of Cypovirus Polyhedra.
Nature V. 446 97 2007
PubMed-ID: 17330045 | Reference-DOI: 10.1038/NATURE05628

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (6, 7)

Asymmetric Unit (6, 7)

No.	Name	Count	Type	Full Name
1	ACE	1	Mod. Amino Acid	ACETYL GROUP
2	ATP	1	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	CL	1	Ligand/Ion	CHLORIDE ION
4	CTP	1	Ligand/Ion	CYTIDINE-5'-TRIPHOSPHATE
5	GTP	1	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
6	MG	2	Ligand/Ion	MAGNESIUM ION

Biological Unit 1 (4, 48)

No.	Name	Count	Type	Full Name
1	ACE	12	Mod. Amino Acid	ACETYL GROUP
2	ATP	12	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	CTP	12	Ligand/Ion	CYTIDINE-5'-TRIPHOSPHATE
5	GTP	12	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
6	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 2 (4, 8)

No.	Name	Count	Type	Full Name
1	ACE	2	Mod. Amino Acid	ACETYL GROUP
2	ATP	2	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	CTP	2	Ligand/Ion	CYTIDINE-5'-TRIPHOSPHATE
5	GTP	2	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
6	MG	-1	Ligand/Ion	MAGNESIUM ION

Biological Unit 3 (4, 12)

No.	Name	Count	Type	Full Name
1	ACE	3	Mod. Amino Acid	ACETYL GROUP
2	ATP	3	Ligand/Ion	ADENOSINE-5'-TRIPHOSPHATE
3	CL	-1	Ligand/Ion	CHLORIDE ION
4	CTP	3	Ligand/Ion	CYTIDINE-5'-TRIPHOSPHATE
5	GTP	3	Ligand/Ion	GUANOSINE-5'-TRIPHOSPHATE
6	MG	-1	Ligand/Ion	MAGNESIUM ION

Sites (6, 6)

Asymmetric Unit (6, 6)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	ALA A:2 , LEU A:31 , HOH A:540	BINDING SITE FOR RESIDUE CL A 249
2	AC2	SOFTWARE	CTP A:254 , HOH A:535 , HOH A:536 , HOH A:537	BINDING SITE FOR RESIDUE MG A 250
3	AC3	SOFTWARE	ATP A:253 , HOH A:297 , HOH A:298 , HOH A:299	BINDING SITE FOR RESIDUE MG A 251
4	AC4	SOFTWARE	ASN A:9 , ARG A:10 , ARG A:18 , HIS A:170 , TYR A:172 , ASN A:173 , LYS A:184 , ATP A:253 , HOH A:291 , HOH A:292 , HOH A:293 , HOH A:301 , HOH A:302 , HOH A:303 , HOH A:312 , HOH A:419 , HOH A:420 , HOH A:444 , HOH A:482	BINDING SITE FOR RESIDUE GTP A 252
5	AC5	SOFTWARE	LYS A:152 , LYS A:154 , ARG A:155 , ASP A:156 , GLY A:157 , ILE A:159 , LYS A:184 , MG A:251 , GTP A:252 , HOH A:272 , HOH A:274 , HOH A:281 , HOH A:287 , HOH A:297 , HOH A:299 , HOH A:300 , HOH A:301 , HOH A:302 , HOH A:305 , HOH A:309 , HOH A:414	BINDING SITE FOR RESIDUE ATP A 253
6	AC6	SOFTWARE	HIS A:76 , ASN A:77 , ASP A:78 , SER A:79 , TYR A:80 , ASP A:81 , ASP A:96 , ARG A:98 , MG A:250 , HOH A:389 , HOH A:390 , HOH A:393 , HOH A:395 , HOH A:466 , HOH A:467 , HOH A:468 , HOH A:535 , HOH A:537	BINDING SITE FOR RESIDUE CTP A 254

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:248
 aligned with O10693_CPVBM | O10693 from UniProtKB/TrEMBL  Length:248

    Alignment length:248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
         O10693_CPVBM     1 MADVAGTSNRDFRGREQRLFNSEQYNYNNSLNGEVSVWVYAYYSDGSVLVINKNSQYKVGISETFKALKEYRKGQHNDSYDEYEVNQSIYYPNGGDARKFHSNAKPRAIQIIFSPSVNVRTIKMAKGNAVSVPDEYLQRSHPWEATGIKYRKIKRDGEIVGYSHYFELPHEYNSISLAVSGVHKNPSSYNVGSAHNVMDVFQSCDLALRFCNRYWAELELVNHYISPNAYPYLDINNHSYGVALSNRQ 248
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -Cypo_polyhedrin-2oh5A01 A:2-248                                                                                                                                                                                                                         Pfam domains
         Sec.struct. author ..........hhhhhhhhhhhhhhhhhhhh...eeeeeeeee.....eeeeeeeee.eeeeeehhhhhh........hhhhhhhhhhhhhh................eeeeee...eeeeeeeeeee........hhhhh.....hhhhheeeee..eeeeeeeeee........eeeeeeee............hhhhhhhhhhhheeeeeee.hhhhhhhhhhhhhh..ee.....ee........ Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oh5 A   1 xADVAGTSNRDFRGREQRLFNSEQYNYNNSLNGEVSVWVYAYYSDGSVLVINKNSQYKVGISETFKALKEYRKGQHNDSYDEYEVNQSIYYPNGGDARKFHSNAKPRAIQIIFSPSVNVRTIKMAKGNAVSVPDEYLQRSHPWEATGIKYRKIKRDGEIVGYSHYFELPHEYNSISLAVSGVHKNPSSYNVGSAHNVMDVFQSCDLALRFCNRYWAELELVNHYISPNAYPYLDINNHSYGVALSNRQ 248
                            |       10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240        
                            |                                                                                                                                                                                                                                                       
                            1-ACE

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (1, 1)

Gene Ontology (3, 3)

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	Cis Peptide Bonds
(no "Cis Peptide Bonds" information available for 2oh5)

Biological Units
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		Biological Unit 3	[ Jena3D ]

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