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(-) Description

Title :  CRYSTAL STRUCTURE OF A DIHYDROOROTASE
 
Authors :  R. Sugadev, D. Kumaran, S. K. Burley, S. Swaminathan, New York Sgx Re Center For Structural Genomics (Nysgxrc)
Date :  05 Jan 07  (Deposition) - 20 Feb 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.62
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B,C,D,E,F  (1x)
Biol. Unit 2:  A  (1x)
Biol. Unit 3:  B  (1x)
Biol. Unit 4:  C  (1x)
Biol. Unit 5:  D  (1x)
Biol. Unit 6:  E  (1x)
Biol. Unit 7:  F  (1x)
Keywords :  Tim Barrel, Binuclear Zinc, Imidazole Complex, Amido Hydrolase, 9244B, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. Sugadev, D. Kumaran, S. K. Burley, S. Swaminathan
Crystal Structure Of A Dihydroorotase
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - DIHYDROOROTASE
    Atcc: 33970
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: BC-PSGX3(BC)
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: AGROBACTERIUM TUMEFACIENS
    Organism Taxid: 176299
    Strain: C58 / ATCC 33970
    Synonym: HYPOTHETICAL PROTEIN ATU3266

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): ABCDEF
Biological Unit 2 (1x): A     
Biological Unit 3 (1x):  B    
Biological Unit 4 (1x):   C   
Biological Unit 5 (1x):    D  
Biological Unit 6 (1x):     E 
Biological Unit 7 (1x):      F

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 61)

Asymmetric Unit (4, 61)
No.NameCountTypeFull Name
1IMD2Ligand/IonIMIDAZOLE
2KCX6Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MSE41Mod. Amino AcidSELENOMETHIONINE
4ZN12Ligand/IonZINC ION
Biological Unit 1 (3, 49)
No.NameCountTypeFull Name
1IMD2Ligand/IonIMIDAZOLE
2KCX6Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MSE41Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 2 (2, 8)
No.NameCountTypeFull Name
1IMD-1Ligand/IonIMIDAZOLE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MSE7Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 3 (2, 8)
No.NameCountTypeFull Name
1IMD-1Ligand/IonIMIDAZOLE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MSE7Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 4 (3, 8)
No.NameCountTypeFull Name
1IMD1Ligand/IonIMIDAZOLE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MSE6Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 5 (3, 9)
No.NameCountTypeFull Name
1IMD1Ligand/IonIMIDAZOLE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MSE7Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 6 (2, 8)
No.NameCountTypeFull Name
1IMD-1Ligand/IonIMIDAZOLE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MSE7Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION
Biological Unit 7 (2, 8)
No.NameCountTypeFull Name
1IMD-1Ligand/IonIMIDAZOLE
2KCX1Mod. Amino AcidLYSINE NZ-CARBOXYLIC ACID
3MSE7Mod. Amino AcidSELENOMETHIONINE
4ZN-1Ligand/IonZINC ION

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:77 , HIS A:79 , KCX A:175 , ASP A:291 , ZN A:419BINDING SITE FOR RESIDUE ZN A 418
02AC2SOFTWAREKCX A:175 , HIS A:208 , HIS A:231 , ZN A:418 , HOH A:421BINDING SITE FOR RESIDUE ZN A 419
03AC3SOFTWAREHIS B:77 , HIS B:79 , KCX B:175 , ASP B:291 , ZN B:501BINDING SITE FOR RESIDUE ZN B 500
04AC4SOFTWAREKCX B:175 , HIS B:208 , HIS B:231 , ZN B:500 , HOH B:503BINDING SITE FOR RESIDUE ZN B 501
05AC5SOFTWAREHIS C:77 , HIS C:79 , KCX C:175 , ASP C:291 , ZN C:601 , IMD C:3744BINDING SITE FOR RESIDUE ZN C 600
06AC6SOFTWAREKCX C:175 , HIS C:208 , HIS C:231 , ZN C:600 , IMD C:3744BINDING SITE FOR RESIDUE ZN C 601
07AC7SOFTWAREHIS D:77 , HIS D:79 , KCX D:175 , ASP D:291 , ZN D:701 , IMD D:3745BINDING SITE FOR RESIDUE ZN D 700
08AC8SOFTWAREKCX D:175 , HIS D:208 , HIS D:231 , ZN D:700 , IMD D:3745BINDING SITE FOR RESIDUE ZN D 701
09AC9SOFTWAREHIS E:77 , HIS E:79 , KCX E:175 , ASP E:291 , ZN E:801BINDING SITE FOR RESIDUE ZN E 800
10BC1SOFTWAREKCX E:175 , HIS E:208 , HIS E:231 , ZN E:800BINDING SITE FOR RESIDUE ZN E 801
11BC2SOFTWAREHIS F:77 , HIS F:79 , KCX F:175 , ASP F:291 , ZN F:901BINDING SITE FOR RESIDUE ZN F 900
12BC3SOFTWAREKCX F:175 , HIS F:208 , HIS F:231 , ZN F:900 , HOH F:903BINDING SITE FOR RESIDUE ZN F 901
13BC4SOFTWAREASN C:144 , KCX C:175 , ARG C:177 , HIS C:208 , ZN C:600 , ZN C:601 , HOH C:3749BINDING SITE FOR RESIDUE IMD C 3744
14BC5SOFTWAREASN D:144 , ARG D:177 , ZN D:700 , ZN D:701BINDING SITE FOR RESIDUE IMD D 3745

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2OGJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2OGJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OGJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OGJ)

(-) Exons   (0, 0)

(no "Exon" information available for 2OGJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:379
 aligned with DEACT_AGRFC | Q7CS13 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:383
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391   
          DEACT_AGRFC    12 QAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYIPRA 394
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ogjA01 A:14-72,A:339-396 Urease, subunit C, domain   1    2ogjA02 A:73-338 Metal-dependent hydrolases                                                                                                                                                                                                                               2ogjA01 A:14-72,A:339-396 Urease, subunit C, domain 1      CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee...........eeeee.....eeeee........eee...--.eeee.eeeeee...........hhhhhhhhh.eeeeeee......hhhhhhhhh......eeeeeee................hhhhhhhhhhhhhhhh....eeeeeeeehhhhhh...hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhh....eee.............hhhhhhhhhhh--...eee........hhhhhhhhhhh.....................hhhhhhhhhhhh..hhhhhhhh.hhhhhhhh..............eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ogj A  14 QAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDA--AFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLkVRASHVITGSWGVTPVKLGKKIAKILKVPmmVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSImEDEDLFNLAERC--EGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSmNFPVWDLATTmSKLLSVDmPFENVVEAVTRNPASVIRLDmENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYIPRA 396
                                    23        33        43        53        63|  |    73        83        93       103       113       123       133       143       153       163       173 |     183       193       203 ||    213       223       233       243       253|  |   263       273       283       293   |   303    |  313  |    323       333   |   343       353       363       373       383       393   
                                                                             64 67                                                                                                         175-KCX                       205-MSE                              242-MSE     254  |                                     297-MSE    308-MSE 316-MSE              337-MSE                                                       
                                                                                                                                                                                                                          206-MSE                                            257                                                                                                                                           


Chain B from PDB  Type:PROTEIN  Length:369
 aligned with DEACT_AGRFC | Q7CS13 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:377
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       
          DEACT_AGRFC    14 PILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRY 390
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ogjB01 B:16    -72,B:339-392 Urease, subunit C,   domain2ogjB02 B:73-338 Metal-dependent hydrolases                                                                                                                                                                                                                               2ogjB01 B:16-72,B:339-392 Urease, subunit C, domain 1  CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee...----....eeeee.....eeee.........eee...--.eeee.eeeeee...........hhhhhhhhh.eeeeeeeeeee..hhhhhhhhh......eeeeeee................hhhhhhhhhhhhhhhh....eeeeeeeehhhhhh...hhhhhhhhhhhhhhh..eeeee.....hhhhhhhhh....eee.............hhhhhhhhhhh--...eeeeee.....hhhhhhhhhhh.....eeee..hhhhhh....hhhhhhhhhhhh..hhhhhhhh.hhhhhhhh..............eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ogj B  16 PILLTNVKPVGF----SQSSTDILIGGDGKIAAVGSALQAPADTQRIDA--AFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLkVRASHVITGSWGVTPVKLGKKIAKILKVPmmVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSImEDEDLFNLAERC--EGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSmNFPVWDLATTmSKLLSVDmPFENVVEAVTRNPASVIRLDmENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRY 392
                                    25 |    | 35        45        55        |- |      75        85        95       105       115       125       135       145       155       165       175       185       195       205|      215       225       235      |245        |- |     265       275       285       295 |     305  |    315|      325       335 |     345       355       365       375       385       
                                      27   32                              64 67                                                                                                         175-KCX                       205-MSE                              242-MSE     254  |                                     297-MSE    308-MSE 316-MSE              337-MSE                                                   
                                                                                                                                                                                                                        206-MSE                                            257                                                                                                                                       


Chain C from PDB  Type:PROTEIN  Length:317
 aligned with DEACT_AGRFC | Q7CS13 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:375
                                    26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386     
          DEACT_AGRFC    17 LTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYI 391
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ogjC01 C           :19                -72,C    :317-32ogjC02 C:73-315 Metal-dependent hydrolases                                                                                                                                                                                                        -2ogjC01 C:19-72,C:31          7-393 Ureas               e, subunit C, domain  CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....ee...-----------...----------------.....----.eeee.eeeeee................hhhh.eeeeeee...hhhhhhhhhhhh......eeeeeee................hhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhh...hhhhhhhhhhhhh....eeeee.....hhhhhhhhh....eee.............hhhhhhhhhhh--...eeeee.........hhhhhhh......eee.............hhhhhhhhh.....hhhhhhhh.hhhhhhhh...----------.eeeee.....---------------....eeeeee...eee..... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ogj C  19 LTNVKPVGF-----------LIG----------------DTQRI----AFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLkVRASHVITGSWGVTPVKLGKKIAKILKVPmmVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSImEDEDLFNLAERC--EGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSmNFPVWDLATTmSKLLSVDmPFENVVEAVTRNPASVIRLD----------ADFTVFDLVDA---------------RLFEPRYAVIGAEAIAASRYI 393
                                    |-         -| |      -        58   |    68        78        88        98       108       118       128       138       148       158       168      |178       188       198      |208       218       228       238   |   248     | 258       268       278       288       298       308       318       328       | -       348        |-         -    |  378       388     
                                   27          39 |               58  62   67                                                                                                         175-KCX                       205-MSE                              242-MSE     254  |                                     297-MSE    308-MSE 316-MSE             336        347       357             373                    
                                                 41                                                                                                                                                                  206-MSE                                            257                                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:364
 aligned with DEACT_AGRFC | Q7CS13 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:378
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383        
          DEACT_AGRFC    14 PILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYI 391
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2ogjD01 D:16-72  ,D:339-393 Urease   , s    ubun   it C, 2ogjD02 D:73-338 Metal-dependent hydrolases                                                                                                                                                                                                                               2ogjD01 D:16-72,D:339-393 Urease, subunit C, domain 1   CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee......--...eeeee.....eee.---...----.ee.---.eee..eeeeee...........hhhhh.....eeeeeee......hhhhhhhhh......eeeeeee.-..............hhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhh...hhhhhhhhhhhhhhh..eeeee.....hhhhhhh......eee.............hhhhhhhhhhhh-...ee.........hhhhhhhhhhh.....................hhhhhhhhhhh...hhhhhhhh.hhhhhhhh..............eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee..eeee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ogj D  16 PILLTNVKPVGFGKG--QSSTDILIGGDGKIAAV---LQA----QRID---AFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNL-SIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLkVRASHVITGSWGVTPVKLGKKIAKILKVPmmVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSImEDEDLFNLAERCA-EGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSmNFPVWDLATTmSKLLSVDmPFENVVEAVTRNPASVIRLDmENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYI 393
                                    25    |  |35        45   |   |55    |  | - |      75        85        95       105       115       125       135 |     145       155       165       175       185       195       205|      215       225       235      |245       255 |     265       275       285       295 |     305  |    315|      325       335 |     345       355       365       375       385        
                                         30 33              49  53 |   60 63  67                                                                 135 |                                   175-KCX                       205-MSE                              242-MSE      255 |                                     297-MSE    308-MSE 316-MSE              337-MSE                                                    
                                                                  55                                                                               137                                                                  206-MSE                                            257                                                                                                                                        


Chain E from PDB  Type:PROTEIN  Length:372
 aligned with DEACT_AGRFC | Q7CS13 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:379
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381         
          DEACT_AGRFC    12 QAPILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRY 390
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains 2ogjE01 E:14-72,   E:339-392 Urease, subunit C, dom  ain 1 2ogjE02 E:73-338 Metal-dependent hydrolases                                                                                                                                                                                                                               2ogjE01 E:14-72,E:339-392 Urease, subunit C, domain 1  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeee.....---...eeeee.....eeeee........eee...--.eeee.eeeeee...........hhhhhhhhh.eeeeeeeeeehhhhhhhhhhhh......eeeeeee.....................hhhhhhhhhhhhh..eeeeee..hhhhhh...hhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhh....eee.............hhhhhhhhhhh--...ee............hh.hhh.......................hhhhhhhhhhhhh.hhhhhhhh.hhhhhhhh..............eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee...eee.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2ogj E  14 QAPILLTNVKPVGFGK---QSSTDILIGGDGKIAAVGSALQAPADTQRIDA--AFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLkVRASHVITGSWGVTPVKLGKKIAKILKVPmmVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSImEDEDLFNLAERC--EGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSmNFPVWDLATTmSKLLSVDmPFENVVEAVTRNPASVIRLDmENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRY 392
                                    23     |  33        43        53        63|  |    73        83        93       103       113       123       133       143       153       163       173 |     183       193       203 ||    213       223       233       243       253|  |   263       273       283       293   |   303    |  313  |    323       333   |   343       353       363       373       383         
                                          29  33                             64 67                                                                                                         175-KCX                       205-MSE                              242-MSE     254  |                                     297-MSE    308-MSE 316-MSE              337-MSE                                                   
                                                                                                                                                                                                                          206-MSE                                            257                                                                                                                                       


Chain F from PDB  Type:PROTEIN  Length:359
 aligned with DEACT_AGRFC | Q7CS13 from UniProtKB/Swiss-Prot  Length:407

    Alignment length:378
                                    23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383        
          DEACT_AGRFC    14 PILLTNVKPVGFGKGASQSSTDILIGGDGKIAAVGSALQAPADTQRIDAKGAFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLKVRASHVITGSWGVTPVKLGKKIAKILKVPMMVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSIMEDEDLFNLAERCAGEGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSMNFPVWDLATTMSKLLSVDMPFENVVEAVTRNPASVIRLDMENRLDVGQRADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYI 391
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains 2ogjF01 F:16   -72,F:339-393 Urease          , sub unit C2ogjF02 F:73-338 Metal-dependent hydrolases                                                                                                                                                                                                                               2ogjF   01 F:16-72,F:339-393 Urease, subunit C, domain  CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .ee....ee...---........ee.....eee..----------.....-.eeee.eeeeee...........hhhhhhhhh.eeeeeee......hhhhhhhhh......eeeeeee................hhhhhhhhhhhhhhhhhh..eeeeeeeehhhhhh...hhhhhhhhhhhhhh...eeeee.....hhhhhhhhh....eee.............hhhhhhhhhhh--...eee...........hhhhhhh............hhhhhhh...hhhhhhhhhhhh..hhhhhhhh.hhhhhhhh..........---.eeeeeeeeeeeeeee.....eeeeeeeeeeeeeee...eee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 2ogj F  16 PILLTNVKPVGF---ASQSSTDILIGGDGKIAAVG----------RIDAK-AFISPGWVDLHVHIWHGGTDISIRPSECGAERGVTTLVDAGSAGEANFHGFREYIIEPSRERIKAFLNLGSIGLVACNRVPELRDIKDIDLDRILECYAENSEHIVGLkVRASHVITGSWGVTPVKLGKKIAKILKVPmmVHVGEPPALYDEVLEILGPGDVVTHCFNGKSGSSImEDEDLFNLAERC--EGIRLDIGHGGASFSFKVAEAAIARGLLPFSISTDLHGHSmNFPVWDLATTmSKLLSVDmPFENVVEAVTRNPASVIRLDmENRLDV---ADFTVFDLVDADLEATDSNGDVSRLKRLFEPRYAVIGAEAIAASRYI 393
                                    25 |   |  35        45    |    -     |  65 |      75        85        95       105       115       125       135       145       155       165       175       185       195       205|      215       225       235      |245        |- |     265       275       285       295 |     305  |    315|      325       335 |     | - |     355       365       375       385        
                                      27  31                 50         61  65 |                                                                                                         175-KCX                       205-MSE                              242-MSE     254  |                                     297-MSE    308-MSE 316-MSE              337-MSE43 347                                              
                                                                              67                                                                                                                                        206-MSE                                            257
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2OGJ)

(-) CATH Domains  (2, 12)

Asymmetric Unit
(-)
Class: Alpha Beta (26913)
(-)
Class: Mainly Beta (13760)
(-)
Architecture: Roll (1513)
(-)
Topology: Urease, subunit C; domain 1 (95)
(-)
Homologous Superfamily: Urease, subunit C, domain 1 (95)
(-)
C58 (Agrobacterium tumefaciens str) (1)
2a2ogjA01A:14-72,A:339-396
2b2ogjE01E:14-72,E:339-392
2c2ogjB01B:16-72,B:339-392
2d2ogjD01D:16-72,D:339-393
2e2ogjF01F:16-72,F:339-393
2f2ogjC01C:19-72,C:317-393

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2OGJ)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (DEACT_AGRFC | Q7CS13)
molecular function
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0016810    hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds    Catalysis of the hydrolysis of any carbon-nitrogen bond, C-N, with the exception of peptide bonds.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.

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