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2OGJ
Asym. Unit
Info
Asym.Unit (348 KB)
Biol.Unit 1 (334 KB)
Biol.Unit 2 (65 KB)
Biol.Unit 3 (63 KB)
Biol.Unit 4 (56 KB)
Biol.Unit 5 (63 KB)
Biol.Unit 6 (64 KB)
Biol.Unit 7 (61 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A DIHYDROOROTASE
Authors
:
R. Sugadev, D. Kumaran, S. K. Burley, S. Swaminathan, New York Sgx Re Center For Structural Genomics (Nysgxrc)
Date
:
05 Jan 07 (Deposition) - 20 Feb 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.62
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Biol. Unit 2: A (1x)
Biol. Unit 3: B (1x)
Biol. Unit 4: C (1x)
Biol. Unit 5: D (1x)
Biol. Unit 6: E (1x)
Biol. Unit 7: F (1x)
Keywords
:
Tim Barrel, Binuclear Zinc, Imidazole Complex, Amido Hydrolase, 9244B, Structural Genomics, Psi-2, Protein Structure Initiative, New York Sgx Research Center For Structural Genomics, Nysgxrc, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. Sugadev, D. Kumaran, S. K. Burley, S. Swaminathan
Crystal Structure Of A Dihydroorotase
To Be Published
[
close entry info
]
Hetero Components
(4, 61)
Info
All Hetero Components
1a: IMIDAZOLE (IMDa)
1b: IMIDAZOLE (IMDb)
2a: LYSINE NZ-CARBOXYLIC ACID (KCXa)
2b: LYSINE NZ-CARBOXYLIC ACID (KCXb)
2c: LYSINE NZ-CARBOXYLIC ACID (KCXc)
2d: LYSINE NZ-CARBOXYLIC ACID (KCXd)
2e: LYSINE NZ-CARBOXYLIC ACID (KCXe)
2f: LYSINE NZ-CARBOXYLIC ACID (KCXf)
3a: SELENOMETHIONINE (MSEa)
3aa: SELENOMETHIONINE (MSEaa)
3ab: SELENOMETHIONINE (MSEab)
3ac: SELENOMETHIONINE (MSEac)
3ad: SELENOMETHIONINE (MSEad)
3ae: SELENOMETHIONINE (MSEae)
3af: SELENOMETHIONINE (MSEaf)
3ag: SELENOMETHIONINE (MSEag)
3ah: SELENOMETHIONINE (MSEah)
3ai: SELENOMETHIONINE (MSEai)
3aj: SELENOMETHIONINE (MSEaj)
3ak: SELENOMETHIONINE (MSEak)
3al: SELENOMETHIONINE (MSEal)
3am: SELENOMETHIONINE (MSEam)
3an: SELENOMETHIONINE (MSEan)
3ao: SELENOMETHIONINE (MSEao)
3b: SELENOMETHIONINE (MSEb)
3c: SELENOMETHIONINE (MSEc)
3d: SELENOMETHIONINE (MSEd)
3e: SELENOMETHIONINE (MSEe)
3f: SELENOMETHIONINE (MSEf)
3g: SELENOMETHIONINE (MSEg)
3h: SELENOMETHIONINE (MSEh)
3i: SELENOMETHIONINE (MSEi)
3j: SELENOMETHIONINE (MSEj)
3k: SELENOMETHIONINE (MSEk)
3l: SELENOMETHIONINE (MSEl)
3m: SELENOMETHIONINE (MSEm)
3n: SELENOMETHIONINE (MSEn)
3o: SELENOMETHIONINE (MSEo)
3p: SELENOMETHIONINE (MSEp)
3q: SELENOMETHIONINE (MSEq)
3r: SELENOMETHIONINE (MSEr)
3s: SELENOMETHIONINE (MSEs)
3t: SELENOMETHIONINE (MSEt)
3u: SELENOMETHIONINE (MSEu)
3v: SELENOMETHIONINE (MSEv)
3w: SELENOMETHIONINE (MSEw)
3x: SELENOMETHIONINE (MSEx)
3y: SELENOMETHIONINE (MSEy)
3z: SELENOMETHIONINE (MSEz)
4a: ZINC ION (ZNa)
4b: ZINC ION (ZNb)
4c: ZINC ION (ZNc)
4d: ZINC ION (ZNd)
4e: ZINC ION (ZNe)
4f: ZINC ION (ZNf)
4g: ZINC ION (ZNg)
4h: ZINC ION (ZNh)
4i: ZINC ION (ZNi)
4j: ZINC ION (ZNj)
4k: ZINC ION (ZNk)
4l: ZINC ION (ZNl)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
IMD
2
Ligand/Ion
IMIDAZOLE
2
KCX
6
Mod. Amino Acid
LYSINE NZ-CARBOXYLIC ACID
3
MSE
41
Mod. Amino Acid
SELENOMETHIONINE
4
ZN
12
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(14, 14)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:77 , HIS A:79 , KCX A:175 , ASP A:291 , ZN A:419
BINDING SITE FOR RESIDUE ZN A 418
02
AC2
SOFTWARE
KCX A:175 , HIS A:208 , HIS A:231 , ZN A:418 , HOH A:421
BINDING SITE FOR RESIDUE ZN A 419
03
AC3
SOFTWARE
HIS B:77 , HIS B:79 , KCX B:175 , ASP B:291 , ZN B:501
BINDING SITE FOR RESIDUE ZN B 500
04
AC4
SOFTWARE
KCX B:175 , HIS B:208 , HIS B:231 , ZN B:500 , HOH B:503
BINDING SITE FOR RESIDUE ZN B 501
05
AC5
SOFTWARE
HIS C:77 , HIS C:79 , KCX C:175 , ASP C:291 , ZN C:601 , IMD C:3744
BINDING SITE FOR RESIDUE ZN C 600
06
AC6
SOFTWARE
KCX C:175 , HIS C:208 , HIS C:231 , ZN C:600 , IMD C:3744
BINDING SITE FOR RESIDUE ZN C 601
07
AC7
SOFTWARE
HIS D:77 , HIS D:79 , KCX D:175 , ASP D:291 , ZN D:701 , IMD D:3745
BINDING SITE FOR RESIDUE ZN D 700
08
AC8
SOFTWARE
KCX D:175 , HIS D:208 , HIS D:231 , ZN D:700 , IMD D:3745
BINDING SITE FOR RESIDUE ZN D 701
09
AC9
SOFTWARE
HIS E:77 , HIS E:79 , KCX E:175 , ASP E:291 , ZN E:801
BINDING SITE FOR RESIDUE ZN E 800
10
BC1
SOFTWARE
KCX E:175 , HIS E:208 , HIS E:231 , ZN E:800
BINDING SITE FOR RESIDUE ZN E 801
11
BC2
SOFTWARE
HIS F:77 , HIS F:79 , KCX F:175 , ASP F:291 , ZN F:901
BINDING SITE FOR RESIDUE ZN F 900
12
BC3
SOFTWARE
KCX F:175 , HIS F:208 , HIS F:231 , ZN F:900 , HOH F:903
BINDING SITE FOR RESIDUE ZN F 901
13
BC4
SOFTWARE
ASN C:144 , KCX C:175 , ARG C:177 , HIS C:208 , ZN C:600 , ZN C:601 , HOH C:3749
BINDING SITE FOR RESIDUE IMD C 3744
14
BC5
SOFTWARE
ASN D:144 , ARG D:177 , ZN D:700 , ZN D:701
BINDING SITE FOR RESIDUE IMD D 3745
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
View:
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Label:
End label:
Sorry, no Info available
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(0, 0)
Info
All SCOP Domains
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Sorry, no Info available
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CATH Domains
(2, 12)
Info
all CATH domains
1a: CATH_2ogjA02 (A:73-338)
1b: CATH_2ogjB02 (B:73-338)
1c: CATH_2ogjD02 (D:73-338)
1d: CATH_2ogjE02 (E:73-338)
1e: CATH_2ogjF02 (F:73-338)
1f: CATH_2ogjC02 (C:73-315)
2a: CATH_2ogjA01 (A:14-72,A:339-396)
2b: CATH_2ogjE01 (E:14-72,E:339-392)
2c: CATH_2ogjB01 (B:16-72,B:339-392)
2d: CATH_2ogjD01 (D:16-72,D:339-393)
2e: CATH_2ogjF01 (F:16-72,F:339-393)
2f: CATH_2ogjC01 (C:19-72,C:317-393)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
Alpha-Beta Barrel
(2994)
Topology
:
TIM Barrel
(2806)
Homologous Superfamily
:
Metal-dependent hydrolases
(190)
C58 (Agrobacterium tumefaciens str)
(1)
1a
2ogjA02
A:73-338
1b
2ogjB02
B:73-338
1c
2ogjD02
D:73-338
1d
2ogjE02
E:73-338
1e
2ogjF02
F:73-338
1f
2ogjC02
C:73-315
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Urease, subunit C; domain 1
(95)
Homologous Superfamily
:
Urease, subunit C, domain 1
(95)
C58 (Agrobacterium tumefaciens str)
(1)
2a
2ogjA01
A:14-72,A:339-396
2b
2ogjE01
E:14-72,E:339-392
2c
2ogjB01
B:16-72,B:339-392
2d
2ogjD01
D:16-72,D:339-393
2e
2ogjF01
F:16-72,F:339-393
2f
2ogjC01
C:19-72,C:317-393
[
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]
Pfam Domains
(0, 0)
Info
all PFAM domains
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