2OGE - JenaLib

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Asymmetric Unit (Jmol Viewer)

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Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   X-RAY STRUCTURE OF S. VENEZUELAE DESV IN ITS INTERNAL ALDIMINE FORM

Authors :   H. M. Holden, E. S. Burgie

Date :   05 Jan 07 (Deposition) - 15 May 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)

Keywords :   Plp-Dependent Enzyme, Desosamine, Transaminase, Deoxysugars, Macrolide Antibiotics, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. S. Burgie, J. B. Thoden, H. M. Holden
Molecular Architecture Of Desv From Streptomyces Venezuelae: A Plp-Dependent Transaminase Involved In The Biosynthesis Of The Unusual Sugar Desosamine.
Protein Sci. V. 16 887 2007
PubMed-ID: 17456741 | Reference-DOI: 10.1110/PS.062711007
(for further references see the PDB file header)

Molecule 1 - TRANSAMINASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28B+
	Expression System Strain	:	ROSETTA DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	DESV
	Organism Scientific	:	STREPTOMYCES VENEZUELAE
	Organism Taxid	:	54571

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 35)

No.	Name	Count	Type	Full Name
1	CL	8	Ligand/Ion	CHLORIDE ION
2	EDO	21	Ligand/Ion	1,2-ETHANEDIOL
3	LLP	4	Mod. Amino Acid	2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
4	NA	2	Ligand/Ion	SODIUM ION

Biological Unit 1 (2, 12)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	10	Ligand/Ion	1,2-ETHANEDIOL
3	LLP	2	Mod. Amino Acid	2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
4	NA	-1	Ligand/Ion	SODIUM ION

Biological Unit 2 (2, 13)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	11	Ligand/Ion	1,2-ETHANEDIOL
3	LLP	2	Mod. Amino Acid	2-LYSINE(3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YLMETHANE)
4	NA	-1	Ligand/Ion	SODIUM ION

Asymmetric Unit (31, 31)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:39 , LEU A:40 , HOH A:1482 , HOH B:1450	BINDING SITE FOR RESIDUE CL A 1297
02	AC2	SOFTWARE	TYR A:227 , HIS A:229 , EDO A:1304 , HOH B:1313	BINDING SITE FOR RESIDUE CL A 1298
03	AC3	SOFTWARE	ASN A:65 , HOH A:1338 , ASN B:65 , HOH B:1308 , HOH B:1309 , HOH B:1454	BINDING SITE FOR RESIDUE NA A 1299
04	AC4	SOFTWARE	TYR B:39 , LEU B:40	BINDING SITE FOR RESIDUE CL B 1300
05	AC5	SOFTWARE	TYR A:318 , HOH A:1435 , HIS B:229 , EDO B:1304	BINDING SITE FOR RESIDUE CL B 1301
06	AC6	SOFTWARE	TYR C:39 , LEU C:40 , HOH C:1343	BINDING SITE FOR RESIDUE CL C 1302
07	AC7	SOFTWARE	TYR C:227 , HIS C:229 , EDO C:1309 , HOH C:1533 , TYR D:318	BINDING SITE FOR RESIDUE CL C 1303
08	AC8	SOFTWARE	ASN C:65 , HOH C:1361 , HOH C:1528 , ASN D:65 , HOH D:1476 , HOH D:1477	BINDING SITE FOR RESIDUE NA C 1304
09	AC9	SOFTWARE	TYR D:39 , LEU D:40	BINDING SITE FOR RESIDUE CL D 1305
10	BC1	SOFTWARE	TYR C:318 , HIS D:229	BINDING SITE FOR RESIDUE CL D 1306
11	BC2	SOFTWARE	PRO A:11 , PHE A:12 , LEU A:13 , ASP A:14 , ASP A:313 , HOH A:1309	BINDING SITE FOR RESIDUE EDO A 1300
12	BC3	SOFTWARE	TYR A:55 , GLU A:57 , ARG A:172 , ARG A:177	BINDING SITE FOR RESIDUE EDO A 1301
13	BC4	SOFTWARE	THR A:118 , PRO A:121 , ASP A:146 , HOH A:1361 , HOH A:1364 , HOH A:1529	BINDING SITE FOR RESIDUE EDO A 1302
14	BC5	SOFTWARE	PRO A:191 , LLP A:193 , ASN A:194 , GLY A:196 , ARG A:249 , HOH A:1313 , HOH A:1388 , HOH A:1389	BINDING SITE FOR RESIDUE EDO A 1303
15	BC6	SOFTWARE	TYR A:227 , HIS A:229 , CL A:1298 , TYR B:93	BINDING SITE FOR RESIDUE EDO A 1304
16	BC7	SOFTWARE	PRO B:11 , PHE B:12 , LEU B:13 , ASP B:313 , HOH B:1331	BINDING SITE FOR RESIDUE EDO B 1302
17	BC8	SOFTWARE	PRO B:191 , LLP B:193 , ASN B:194 , ARG B:249 , PRO B:355 , HOH B:1332 , HOH B:1410 , HOH B:1412	BINDING SITE FOR RESIDUE EDO B 1303
18	BC9	SOFTWARE	TYR A:93 , TYR A:190 , LLP A:193 , TYR B:221 , ASN B:235 , ARG B:237	BINDING SITE FOR RESIDUE EDO A 1305
19	CC1	SOFTWARE	PHE C:12 , LEU C:13 , GLY C:192 , HIS C:291 , LEU C:292 , HOH C:1320 , HOH C:1322 , HOH C:1410	BINDING SITE FOR RESIDUE EDO C 1305
20	CC2	SOFTWARE	ARG C:151 , ARG C:176 , ARG C:177 , HOH C:1404 , HOH C:1521	BINDING SITE FOR RESIDUE EDO C 1306
21	CC3	SOFTWARE	PRO D:11 , PHE D:12 , LEU D:13 , ASP D:313 , HOH D:1486 , HOH D:1582	BINDING SITE FOR RESIDUE EDO D 1307
22	CC4	SOFTWARE	PRO D:191 , LLP D:193 , ASN D:194 , ARG D:249 , PRO D:355 , HOH D:1337 , HOH D:1419 , HOH D:1422	BINDING SITE FOR RESIDUE EDO D 1308
23	CC5	SOFTWARE	ASP C:27 , EDO C:1308 , ASP D:27	BINDING SITE FOR RESIDUE EDO C 1307
24	CC6	SOFTWARE	HIS D:113 , HIS D:116 , THR D:118 , ASP D:146 , HOH D:1392 , HOH D:1393 , HOH D:1403	BINDING SITE FOR RESIDUE EDO D 1309
25	CC7	SOFTWARE	ASP A:27 , ALA A:31 , ASP B:27 , ILE B:30	BINDING SITE FOR RESIDUE EDO A 1306
26	CC8	SOFTWARE	LEU A:315 , HIS A:317 , LYS B:226 , TYR B:227 , CL B:1301 , HOH B:1451	BINDING SITE FOR RESIDUE EDO B 1304
27	CC9	SOFTWARE	GLY C:37 , LEU D:13 , ASP D:14 , LEU D:15 , LYS D:16 , HOH D:1318 , HOH D:1336 , HOH D:1486	BINDING SITE FOR RESIDUE EDO D 1310
28	DC1	SOFTWARE	ARG D:172 , ARG D:177 , HOH D:1534	BINDING SITE FOR RESIDUE EDO D 1311
29	DC2	SOFTWARE	ASP C:27 , ALA C:28 , EDO C:1307 , HOH C:1337	BINDING SITE FOR RESIDUE EDO C 1308
30	DC3	SOFTWARE	LYS C:226 , TYR C:227 , CL C:1303 , HOH C:1534 , HIS D:317	BINDING SITE FOR RESIDUE EDO C 1309
31	DC4	SOFTWARE	TYR D:93 , GLN D:167 , LLP D:193 , TYR D:318 , HOH D:1386 , HOH D:1611	BINDING SITE FOR RESIDUE EDO D 1312

(no "SS Bond" information available for 2OGE)

Asymmetric Unit

No.	Residues
1	His A:317	-	Tyr A:318
2	His B:317	-	Tyr B:318
3	His C:317	-	Tyr C:318
4	His D:317	-	Tyr D:318

(no "SAP(SNP)/Variant" information available for 2OGE)

(no "PROSITE Motif" information available for 2OGE)

(no "Exon" information available for 2OGE)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:368
 aligned with DESV_STRVZ | Q9ZGH4 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:368
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367        
           DESV_STRVZ     8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAER 375
               SCOP domains d2ogea_ A: automated matches                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2ogeA01 A:8-110,A:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)          ------2ogeA01 A:8-110,A:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                           --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhhh.eeeee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.....eeee..hhhhhhhhhhhh..........hhhhhhhhh........hhhhhhhhhheeee......hhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oge A   8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGkNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAER 375
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187     | 197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367        
                                                                                                                                                                                                                   193-LLP

Chain B from PDB  Type:PROTEIN  Length:369
 aligned with DESV_STRVZ | Q9ZGH4 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:369
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367         
           DESV_STRVZ     8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
               SCOP domains d2ogeb_ B: automated matches                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2ogeB01 B:8-110,B:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)          ------2ogeB01 B:8-110,B:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                           ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhhh.ee.ee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.....eeee..hhhhhhhhhhhh..........hhhhhhhhhh.......hhhhhhhhhheeee......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oge B   8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGkNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187     | 197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367         
                                                                                                                                                                                                                   193-LLP

Chain C from PDB  Type:PROTEIN  Length:369
 aligned with DESV_STRVZ | Q9ZGH4 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:369
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367         
           DESV_STRVZ     8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
               SCOP domains d2ogec_ C: automated matches                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2ogeC01 C:8-110,C:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)          ------2ogeC01 C:8-110,C:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                           ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eeeee...hhhhhhhhhh...eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhh..ee.ee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.....eeee..hhhhhhhhhhhh..........hhhhhhhhh........hhhhhhhhhheeee......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oge C   8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGkNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187     | 197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367         
                                                                                                                                                                                                                   193-LLP

Chain D from PDB  Type:PROTEIN  Length:368
 aligned with DESV_STRVZ | Q9ZGH4 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:368
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367        
           DESV_STRVZ     8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAER 375
               SCOP domains d2oged_ D: automated matches                                                                                                                                                                                                                                                                                                                                                     SCOP domains
               CATH domains 2ogeD01 D:8-110,D:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)          ------2ogeD01 D:8-110,D:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                           --------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhh..ee.ee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.....eeee..hhhhhhhhhhhh..........hhhhhhhhh........hhhhhhhhhheeee......hhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oge D   8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGkNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAER 375
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187     | 197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367        
                                                                                                                                                                                                                   193-LLP

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: automated matches (163)

Protein domain: automated matches (163)

Streptomyces venezuelae [TaxId: 54571] (2)

1a	d2ogea_	A:
1b	d2ogeb_	B:
1c	d2ogec_	C:
1d	d2oged_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aspartate Aminotransferase; domain 2 (384)

Homologous Superfamily: Type I PLP-dependent aspartate aminotransferase-like (Major domain) (384)

Streptomyces venezuelae. Organism_taxid: 54571. (2)

1a	2ogeA01	A:8-110,A:117-252
1b	2ogeB01	B:8-110,B:117-252
1c	2ogeC01	C:8-110,C:117-252
1d	2ogeD01	D:8-110,D:117-252

(no "Pfam Domain" information available for 2OGE)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (DESV_STRVZ | Q9ZGH4)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0030170	pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
	GO:0008483	transaminase activity	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0017000	antibiotic biosynthetic process	The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
	GO:0033068	macrolide biosynthetic process	The chemical reactions and pathways leading to the formation of macrolides, any of a large group of polyketide compounds that contain a large lactone ring with few or no double bonds and no nitrogen atoms, linked glycosidically to one or more sugar groups. The macrolides include the carbomycins, the erythromycins, oleandomycin, oligomycins, and the spiramycins, and act as antibiotics, mainly against Gram-positive bacteria.

Asymmetric Unit
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	Cis Peptide Bonds
		His A:317 - Tyr A:318	[ RasMol ]
		His B:317 - Tyr B:318	[ RasMol ]
		His C:317 - Tyr C:318	[ RasMol ]
		His D:317 - Tyr D:318	[ RasMol ]

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	Complete Structure
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		Biological Unit 2	[ Jena3D ]

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Molscript
	protein, nucleic acid: cartoon; ligands: spacefill; active site: ball and stick [ mono PDF format \| stereo PDF format ](default orientation, automatically generated)

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	2oge
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UniProtKB/Swiss-Prot
	DESV_STRVZ \| Q9ZGH4	:	2oga

2oga	X-RAY STRUCTURE OF S. VENEZUELAE DESV IN COMPLEX WITH A KETIMINE INTERMEDIATE

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 35)

Sites (31, 31)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

Classification and Annotation

SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File