2OGA - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Biological Unit 3 (Jmol Viewer)

Title :   X-RAY CRYSTAL STRUCTURE OF S. VENEZUELAE DESV IN COMPLEX WITH KETIMINE INTERMEDIATE

Authors :   H. M. Holden, E. S. Burgie

Date :   05 Jan 07 (Deposition) - 15 May 07 (Release) - 24 Feb 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.05

Chains :   Asym. Unit : A,B,C,D
Biol. Unit 1: A,B  (1x)
Biol. Unit 2: C,D  (1x)
Biol. Unit 3: A,B,C,D  (1x)

Keywords :   Plp-Dependent Enzyme, Desosamine, Transaminase, Deoxysugars, Antibiotics, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. S. Burgie, J. B. Thoden, H. M. Holden
Molecular Architecture Of Desv From Streptomyces Venezuelae: A Plp-Dependent Transaminase Involved In The Biosynthesis Of The Unusual Sugar Desosamine.
Protein Sci. V. 16 887 2007
PubMed-ID: 17456741 | Reference-DOI: 10.1110/PS.062711007
(for further references see the PDB file header)

Molecule 1 - TRANSAMINASE
	Chains	:	A, B, C, D
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PET28B+
	Expression System Strain	:	ROSETTA DE3
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	DESV
	Organism Scientific	:	STREPTOMYCES VENEZUELAE
	Organism Taxid	:	54571

		1	2	3	4
Asymmetric Unit	:	A	B	C	D
Biological Unit 1 (1x)	:	A	B
Biological Unit 2 (1x)	:			C	D
Biological Unit 3 (1x)	:	A	B	C	D

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (4, 15)

No.	Name	Count	Type	Full Name
1	CL	4	Ligand/Ion	CHLORIDE ION
2	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
3	NA	2	Ligand/Ion	SODIUM ION
4	PGU	4	Ligand/Ion	N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-GLUTAMIC ACID

Biological Unit 1 (2, 6)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	4	Ligand/Ion	1,2-ETHANEDIOL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PGU	2	Ligand/Ion	N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-GLUTAMIC ACID

Biological Unit 2 (2, 3)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	1	Ligand/Ion	1,2-ETHANEDIOL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PGU	2	Ligand/Ion	N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-GLUTAMIC ACID

Biological Unit 3 (2, 9)

No.	Name	Count	Type	Full Name
1	CL	-1	Ligand/Ion	CHLORIDE ION
2	EDO	5	Ligand/Ion	1,2-ETHANEDIOL
3	NA	-1	Ligand/Ion	SODIUM ION
4	PGU	4	Ligand/Ion	N-({3-HYDROXY-2-METHYL-5-[(PHOSPHONOOXY)METHYL]PYRIDIN-4-YL}METHYL)-L-GLUTAMIC ACID

Asymmetric Unit (15, 15)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	TYR A:39 , LEU A:40	BINDING SITE FOR RESIDUE CL A 380
02	AC2	SOFTWARE	HOH A:1181 , TYR B:39 , LEU B:40	BINDING SITE FOR RESIDUE CL B 380
03	AC3	SOFTWARE	ARG C:38 , TYR C:39 , LEU C:40	BINDING SITE FOR RESIDUE CL C 380
04	AC4	SOFTWARE	TYR D:39 , LEU D:40	BINDING SITE FOR RESIDUE CL D 380
05	AC5	SOFTWARE	ASN C:65 , HOH C:1042 , ASN D:65 , HOH D:1026 , HOH D:1027 , HOH D:1028	BINDING SITE FOR RESIDUE NA C 1025
06	AC6	SOFTWARE	ASN A:65 , HOH A:1040 , HOH A:1041 , HOH A:1043 , ASN B:65 , HOH B:1024	BINDING SITE FOR RESIDUE NA A 1022
07	AC7	SOFTWARE	TYR A:55 , GLU A:57 , ARG A:172 , ARG A:177 , HOH A:1124 , ASP D:308	BINDING SITE FOR RESIDUE EDO A 1023
08	AC8	SOFTWARE	PRO B:191 , LYS B:193 , ASN B:194 , PRO B:355 , HOH B:1064 , HOH B:1065 , HOH B:1103	BINDING SITE FOR RESIDUE EDO B 381
09	AC9	SOFTWARE	ARG A:224 , HIS C:60	BINDING SITE FOR RESIDUE EDO C 1026
10	BC1	SOFTWARE	PRO A:191 , LYS A:193 , ASN A:194 , PRO A:355 , HOH A:1068 , HOH A:1106 , HOH A:1287	BINDING SITE FOR RESIDUE EDO A 1024
11	BC2	SOFTWARE	ARG B:172 , ARG B:177 , ASP B:254 , HOH B:1061 , HOH B:1259	BINDING SITE FOR RESIDUE EDO B 382
12	BC3	SOFTWARE	SER A:66 , GLY A:67 , TYR A:93 , ALA A:95 , ASP A:164 , ALA A:166 , GLN A:167 , SER A:188 , TYR A:190 , LYS A:193 , TYR A:318 , HOH A:1069 , HOH A:1290 , TYR B:221 , TYR B:227 , ASN B:235 , ARG B:237	BINDING SITE FOR RESIDUE PGU A 1020
13	BC4	SOFTWARE	TYR A:221 , LYS A:226 , TYR A:227 , ASN A:235 , ARG A:237 , SER B:66 , GLY B:67 , TYR B:93 , ALA B:95 , ASP B:164 , ALA B:166 , GLN B:167 , SER B:188 , TYR B:190 , LYS B:193 , TYR B:318 , HOH B:1066 , HOH B:1200	BINDING SITE FOR RESIDUE PGU B 1021
14	BC5	SOFTWARE	SER C:66 , GLY C:67 , MET C:68 , TYR C:93 , ASP C:164 , ALA C:166 , GLN C:167 , SER C:188 , TYR C:190 , LYS C:193 , TYR C:318 , HOH C:1060 , HOH C:1247 , HOH C:1248 , TYR D:221 , TYR D:227 , ASN D:235 , ARG D:237	BINDING SITE FOR RESIDUE PGU C 1023
15	BC6	SOFTWARE	TYR C:221 , TYR C:227 , ASN C:235 , ARG C:237 , SER D:66 , GLY D:67 , MET D:68 , TYR D:93 , ALA D:95 , ASP D:164 , ALA D:166 , GLN D:167 , SER D:188 , TYR D:190 , LYS D:193 , TYR D:318 , HOH D:1102 , HOH D:1139 , HOH D:1218	BINDING SITE FOR RESIDUE PGU D 1024

(no "SS Bond" information available for 2OGA)

Asymmetric Unit

No.	Residues
1	His A:317	-	Tyr A:318
2	His B:317	-	Tyr B:318
3	His C:317	-	Tyr C:318
4	His D:317	-	Tyr D:318

(no "SAP(SNP)/Variant" information available for 2OGA)

(no "PROSITE Motif" information available for 2OGA)

(no "Exon" information available for 2OGA)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:371
 aligned with DESV_STRVZ | Q9ZGH4 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:371
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376 
           DESV_STRVZ     7 TPRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 377
               SCOP domains d2ogaa_ A: automated matches                                                                                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains 2ogaA01 A:7-110,A:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)           ------2ogaA01 A:7-110,A:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                           ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhhh.ee.ee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhhh..................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.....eeee..hhhhhhhhhhhh..........hhhhhhhhhh.......hhhhhhhhhheeee......hhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oga A   7 TPRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERVD 377
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376

Chain B from PDB  Type:PROTEIN  Length:370
 aligned with DESV_STRVZ | Q9ZGH4 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:370
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376
           DESV_STRVZ     7 TPRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
               SCOP domains d2ogab_ B: automated matches                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 2ogaB01 B:7-110,B:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)           ------2ogaB01 B:7-110,B:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                           ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhh...eeeee.........hhhhhhh.....eeee...hhhhh..hhhhhhhhhhhhh.ee.ee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.....eeee..hhhhhhhhhhhh..........hhhhh..hhhhh.....hhhhhhhhhheeee......hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oga B   7 TPRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376

Chain C from PDB  Type:PROTEIN  Length:369
 aligned with DESV_STRVZ | Q9ZGH4 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:369
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367         
           DESV_STRVZ     8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
               SCOP domains d2ogac_ C: automated matches                                                                                                                                                                                                                                                                                                                                                      SCOP domains
               CATH domains 2ogaC01 C:8-110,C:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)          ------2ogaC01 C:8-110,C:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                           ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eeeee....hhhhhhhhhh..eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhhh.eeeee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.....eeee..hhhhhhhhhhhh..........hhhhhhhhhh.......hhhhhhhhhheeee......hhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oga C   8 PRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247       257       267       277       287       297       307       317       327       337       347       357       367

Chain D from PDB  Type:PROTEIN  Length:370
 aligned with DESV_STRVZ | Q9ZGH4 from UniProtKB/Swiss-Prot  Length:379

    Alignment length:370
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376
           DESV_STRVZ     7 TPRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
               SCOP domains d2ogad_ D: automated matches                                                                                                                                                                                                                                                                                                                                                       SCOP domains
               CATH domains 2ogaD01 D:7-110,D:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)           ------2ogaD01 D:7-110,D:117-252 Type I PLP-dependent aspartate aminotransferase-like (Major domain)                                           ---------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh...eeeee.hhhhhhhhhhhhh......eeeee...hhhhhhhhhh...eeeee.........hhhhhhhhh...eeee...hhhhh..hhhhhhhhhhhhh.eeeee.......ee..ee......eeeee.............eeeee.hhhhhhhhhhhh...................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..............ee.....eeee..hhhhhhhhhhhh..........hhhhh............hhhhhhhhhheeee......hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2oga D   7 TPRVPFLDLKAAYEELRAETDAAIARVLDSGRYLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLGIGPGDEVIVPSHTYIASWLAVSATGATPVPVEPHEDHPTLDPLLVEKAITPRTRALLPVHLYGHPADMDALRELADRHGLHIVEDAAQAHGARYRGRRIGAGSSVAAFSFYPGKNLGCFGDGGAVVTGDPELAERLRMLRNYGSRQKYSHETKGTNSRLDEMQAAVLRIRLAHLDSWNGRRSALAAEYLSGLAGLPGIGLPVTAPDTDPVWHLFTVRTERRDELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAERV 376
                                    16        26        36        46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Asymmetric Unit

Classes(

)

Folds(

)

Superfamilies( (-)

)

Families(

)

Protein Domains( (-)

)

Organisms( (-)

)

Class: Alpha and beta proteins (a/b) (23833)

Fold: PLP-dependent transferase-like (627)

Superfamily: PLP-dependent transferases (625)

Family: automated matches (163)

Protein domain: automated matches (163)

Streptomyces venezuelae [TaxId: 54571] (2)

1a	d2ogaa_	A:
1b	d2ogab_	B:
1c	d2ogac_	C:
1d	d2ogad_	D:

Asymmetric Unit

Classes(

)

Architectures( (-)

)

Topologies( (-)

)

Homologous Superfamilies( (-)

)

Organisms( (-)

)

Class: Alpha Beta (26913)

Architecture: 3-Layer(aba) Sandwich (12045)

Topology: Aspartate Aminotransferase; domain 2 (384)

Homologous Superfamily: Type I PLP-dependent aspartate aminotransferase-like (Major domain) (384)

Streptomyces venezuelae. Organism_taxid: 54571. (2)

1a	2ogaA01	A:7-110,A:117-252
1b	2ogaB01	B:7-110,B:117-252
1c	2ogaD01	D:7-110,D:117-252
1d	2ogaC01	C:8-110,C:117-252

(no "Pfam Domain" information available for 2OGA)

Asymmetric Unit(hide GO term definitions)

Chain A,B,C,D (DESV_STRVZ | Q9ZGH4)

molecular function
	GO:0003824	catalytic activity	Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
	GO:0030170	pyridoxal phosphate binding	Interacting selectively and non-covalently with pyridoxal 5' phosphate, 3-hydroxy-5-(hydroxymethyl)-2-methyl4-pyridine carboxaldehyde 5' phosphate, the biologically active form of vitamin B6.
	GO:0008483	transaminase activity	Catalysis of the transfer of an amino group to an acceptor, usually a 2-oxo acid.
	GO:0016740	transferase activity	Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
	GO:0017000	antibiotic biosynthetic process	The chemical reactions and pathways resulting in the formation of an antibiotic, a substance produced by or derived from certain fungi, bacteria, and other organisms, that can destroy or inhibit the growth of other microorganisms.
	GO:0033068	macrolide biosynthetic process	The chemical reactions and pathways leading to the formation of macrolides, any of a large group of polyketide compounds that contain a large lactone ring with few or no double bonds and no nitrogen atoms, linked glycosidically to one or more sugar groups. The macrolides include the carbomycins, the erythromycins, oleandomycin, oligomycins, and the spiramycins, and act as antibiotics, mainly against Gram-positive bacteria.

Asymmetric Unit
	Complete Structure
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	Ligands, Modified Residues, Ions
		CL	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
		EDO	[ RasMol \| Jena3D ]	+environment [ RasMol \| Jena3D ]
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	Sites
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		BC5	[ RasMol ]	+environment [ RasMol ]
		BC6	[ RasMol ]	+environment [ RasMol ]

	Cis Peptide Bonds
		His A:317 - Tyr A:318	[ RasMol ]
		His B:317 - Tyr B:318	[ RasMol ]
		His C:317 - Tyr C:318	[ RasMol ]
		His D:317 - Tyr D:318	[ RasMol ]

Biological Units
	Complete Structure
		Biological Unit 1	[ Jena3D ]
		Biological Unit 2	[ Jena3D ]
		Biological Unit 3	[ Jena3D ]

Jmol
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	2oga
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	DESV_STRVZ \| Q9ZGH4	:	2oge

(no "Related Entries Specified in the PDB File" available for 2OGA)

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (4, 15)

Sites (15, 15)

SS Bonds (0, 0)

Cis Peptide Bonds (4, 4)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

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SCOP Domains (1, 4)

CATH Domains (1, 4)

Pfam Domains (0, 0)

Gene Ontology (6, 6)

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Related Entries Specified in the PDB File