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(-) Description

Title :  CRYSTAL STRUCTURE OF CHIMPANZEE ADENOVIRUS (TYPE 68/SIMIAN 25) MAJOR COAT PROTEIN HEXON
 
Authors :  F. Xue, J. J. Rux, R. M. Burnett
Date :  18 Dec 06  (Deposition) - 24 Jul 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.10
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Trimer, Double-Barrel Subunit, Viral Jellyroll, Base, Hypervariable Tower, Viral Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. L. Pichla-Gollon, M. Drinker, X. Zhou, F. Xue, J. J. Rux, G. -P. Gao, J. M. Wilson, H. C. J. Ertl, R. M. Burnett, J. M. Bergelson
Structure-Based Identification Of A Major Neutralizing Site In An Adenovirus Hexon
J. Virol. V. 81 1680 2007
PubMed-ID: 17108028  |  Reference-DOI: 10.1128/JVI.02023-06
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - HEXON
    Chains: A, B, C
    Organism Scientific: SIMIAN ADENOVIRUS 25
    Organism Taxid: 175567
    Strain: TYPE 68/SIMIAN 25
    Synonym: PII

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 46)

Asymmetric/Biological Unit (2, 46)
No.NameCountTypeFull Name
12HP22Ligand/IonDIHYDROGENPHOSPHATE ION
2MPD24Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL

(-) Sites  (44, 44)

Asymmetric Unit (44, 44)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:539 , ASP B:730 , ASN B:735 , LYS B:842 , HOH B:1774 , HOH B:2054BINDING SITE FOR RESIDUE 2HP B 1601
02AC2SOFTWARETHR A:57 , ASP A:58 , ARG A:59 , ALA A:603 , HIS A:604 , ASN A:605 , HOH A:2190BINDING SITE FOR RESIDUE 2HP A 1602
03AC3SOFTWAREPRO A:110 , ASP A:482BINDING SITE FOR RESIDUE 2HP A 1603
04AC4SOFTWAREHIS B:539 , ASP C:730 , ASN C:735 , LYS C:842 , HOH C:1993BINDING SITE FOR RESIDUE 2HP C 1604
05AC5SOFTWAREARG B:650 , ASN B:651 , PRO B:924 , PHE B:925 , SER B:926 , HOH B:2163BINDING SITE FOR RESIDUE 2HP B 1605
06AC6SOFTWARETHR B:57 , ASP B:58 , ARG B:59 , HIS B:604 , ASN B:605BINDING SITE FOR RESIDUE 2HP B 1606
07AC7SOFTWAREASP B:360 , ARG B:363 , HOH B:1783 , HOH B:1791 , HOH B:2055 , HOH B:2118 , HOH B:2121 , GLY C:766BINDING SITE FOR RESIDUE 2HP B 1607
08AC8SOFTWAREASN B:755 , GLN B:759 , MET B:860 , HOH B:1954 , THR C:36 , TYR C:37BINDING SITE FOR RESIDUE 2HP B 1608
09AC9SOFTWARESER A:24 , ARG B:615 , ASN B:616 , THR B:618 , HIS B:912 , ARG B:913 , 2HP B:1615BINDING SITE FOR RESIDUE 2HP B 1609
10BC1SOFTWAREASP A:730 , ASN A:735 , LYS A:842 , HOH A:2162 , HIS C:539BINDING SITE FOR RESIDUE 2HP A 1610
11BC2SOFTWAREPRO C:110 , ASP C:482 , HOH C:2085BINDING SITE FOR RESIDUE 2HP C 1611
12BC3SOFTWAREARG B:519 , HIS C:385BINDING SITE FOR RESIDUE 2HP B 1612
13BC4SOFTWAREGLY A:766 , ASP C:360 , HOH C:1792 , HOH C:1967 , HOH C:2130BINDING SITE FOR RESIDUE 2HP C 1613
14BC5SOFTWAREASP B:617 , PRO B:911 , HIS B:912 , HOH B:2067BINDING SITE FOR RESIDUE 2HP B 1614
15BC6SOFTWARESER A:24 , GLY A:26 , SER B:608 , GLU B:611 , ALA B:612 , 2HP B:1609 , HOH B:2043 , HOH B:2200BINDING SITE FOR RESIDUE 2HP B 1615
16BC7SOFTWARETHR B:665 , THR B:668 , ASP B:676 , TYR B:678 , PHE B:679BINDING SITE FOR RESIDUE 2HP B 1616
17BC8SOFTWAREASN C:499 , TRP C:504 , LEU C:506 , ASP C:507 , PRO C:508 , ARG C:783 , HOH C:1969BINDING SITE FOR RESIDUE 2HP C 1617
18BC9SOFTWARETHR C:57 , ASP C:58 , ARG C:59 , ALA C:603 , HIS C:604 , ASN C:605BINDING SITE FOR RESIDUE 2HP C 1618
19CC1SOFTWAREARG A:615 , HIS A:912 , ARG A:913 , HOH A:2106BINDING SITE FOR RESIDUE 2HP A 1619
20CC2SOFTWARETHR A:362 , VAL A:372 , SER A:374 , MET A:771 , ARG A:848 , HOH A:2099 , HOH A:2261BINDING SITE FOR RESIDUE 2HP A 1620
21CC3SOFTWAREALA B:875 , ASN B:876 , SER B:877 , HIS B:879 , MPD B:1724BINDING SITE FOR RESIDUE 2HP B 1621
22CC4SOFTWAREASN B:499 , TRP B:504 , LEU B:506 , ASP B:507 , PRO B:508 , ARG B:783 , MPD B:1719BINDING SITE FOR RESIDUE 2HP B 1622
23CC5SOFTWAREASN C:755 , GLN C:759 , TYR C:762 , HOH C:1716BINDING SITE FOR RESIDUE MPD C 1701
24CC6SOFTWAREALA A:31 , ASP A:35 , GLY A:41 , HOH A:1815 , HOH A:1959 , HOH A:2076 , HOH A:2157BINDING SITE FOR RESIDUE MPD A 1702
25CC7SOFTWAREASN B:226 , LYS B:227 , GLU B:228 , LYS B:242 , GLN C:795BINDING SITE FOR RESIDUE MPD B 1703
26CC8SOFTWAREASN A:513 , ASN A:516 , LYS A:664 , LYS A:666 , GLU A:667 , HOH A:2191BINDING SITE FOR RESIDUE MPD A 1704
27CC9SOFTWARETYR A:467 , LEU A:799BINDING SITE FOR RESIDUE MPD A 1705
28DC1SOFTWAREASN A:624 , ASP A:625 , TYR A:626 , SER A:628 , ARG A:656 , ALA A:864BINDING SITE FOR RESIDUE MPD A 1706
29DC2SOFTWAREASP B:35 , GLY B:41 , HOH B:2256BINDING SITE FOR RESIDUE MPD B 1707
30DC3SOFTWAREASP A:71 , GLU A:73 , PRO B:69 , ARG B:72BINDING SITE FOR RESIDUE MPD B 1708
31DC4SOFTWAREASN B:513 , ASN B:516 , LYS B:664 , LYS B:666 , GLU B:667 , HOH B:1902 , HOH B:2218BINDING SITE FOR RESIDUE MPD B 1709
32DC5SOFTWARETYR B:465 , TYR B:467 , HOH B:2075 , HOH B:2137BINDING SITE FOR RESIDUE MPD B 1710
33DC6SOFTWAREASN B:624 , TYR B:626 , SER B:628 , ARG B:656BINDING SITE FOR RESIDUE MPD B 1711
34DC7SOFTWAREGLY C:41 , HOH C:1934BINDING SITE FOR RESIDUE MPD C 1712
35DC8SOFTWAREASN C:513 , ASN C:516 , LYS C:664 , LYS C:666 , GLU C:667 , TYR C:693 , HOH C:2008 , HOH C:2068BINDING SITE FOR RESIDUE MPD C 1713
36DC9SOFTWAREASN C:624 , TYR C:626 , SER C:628 , ARG C:656 , ALA C:864BINDING SITE FOR RESIDUE MPD C 1715
37EC1SOFTWAREASP A:360 , HOH A:2188 , GLY B:766 , HOH B:1988 , HOH B:2251BINDING SITE FOR RESIDUE MPD A 1716
38EC2SOFTWAREGLN A:795 , LYS C:227BINDING SITE FOR RESIDUE MPD A 1717
39EC3SOFTWAREPRO B:110 , ASP B:482 , HOH B:1747BINDING SITE FOR RESIDUE MPD B 1718
40EC4SOFTWARELEU B:493 , ILE B:498 , 2HP B:1622BINDING SITE FOR RESIDUE MPD B 1719
41EC5SOFTWAREASN A:253 , SER A:255 , ASP C:405 , THR C:406BINDING SITE FOR RESIDUE MPD A 1720
42EC6SOFTWAREASN B:413 , THR B:418BINDING SITE FOR RESIDUE MPD B 1722
43EC7SOFTWAREASP B:71 , GLU B:73 , LYS B:80 , GLU B:562BINDING SITE FOR RESIDUE MPD B 1723
44EC8SOFTWAREPHE B:705 , 2HP B:1621BINDING SITE FOR RESIDUE MPD B 1724

(-) SS Bonds  (3, 3)

Asymmetric/Biological Unit
No.Residues
1A:395 -B:395
2A:395 -C:395
3B:395 -C:395

(-) Cis Peptide Bonds  (12, 12)

Asymmetric/Biological Unit
No.Residues
1Gln A:183 -Pro A:184
2Trp A:711 -Pro A:712
3Tyr A:826 -Pro A:827
4Thr A:923 -Pro A:924
5Gln B:183 -Pro B:184
6Trp B:711 -Pro B:712
7Tyr B:826 -Pro B:827
8Thr B:923 -Pro B:924
9Gln C:183 -Pro C:184
10Trp C:711 -Pro C:712
11Tyr C:826 -Pro C:827
12Thr C:923 -Pro C:924

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2OBE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2OBE)

(-) Exons   (0, 0)

(no "Exon" information available for 2OBE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:915
 aligned with Q8UY79_9ADEN | Q8UY79 from UniProtKB/TrEMBL  Length:933

    Alignment length:925
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885       895       905       915       925     
         Q8UY79_9ADEN     6 MLPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHDVTTDRSQRLTLRFVPVDREDNTYSYKVRYTLAVGDNRVLDMASTYFDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNTCQWTYKADGETATEKTYTYGNAPVQGINITKDGIQLGTDTDDQPIYADKTYQPEPQVGDAEWHDITGTDEKYGGRALKPDTKMKPCYGSFAKPTNKEGGQANVKTGTGTTKEYDIDMAFFDNRSAAAAGLAPEIVLYTENVDLETPDTHIVYKAGTDDSSSSINLGQQAMPNRPNYIGFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNQAVDSYDPDVRIIENHGVEDELPNYCFPLDAVGRTDTYQGIKANGTDQTTWTKDDSVNDANEIGKGNPFAMEINIQANLWRNFLYANVALYLPDSYKYTPANVTLPTNTNTYDYMNGRVVAPSLVDSYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKSLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRTDGASISFTSINLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKKVSITFDSSVSWPGNDRLLTPNEFEIKRTVDGEGYNVAQCNMTKDWFLVQMLAHYNIGYQGFYVPEGYKDRMYSFFRNFQPMSRQVVDEVNYKDYQAVTLAYQHNNSGFVGYLAPTMRQGQPYPAXYPYPLIGKSAVTSVTQKKFLCDRVMWRIPFSSNFMSMGALTDLGQNMLYANSAHALDMNFEVDPMDESTLLYVVFEVFDVVRVHQPHRGVIEAVYXRTPFSAGN 930
               SCOP domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------d2obea1 A:616-929 automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhh...................eeee...eeee...eeeeeeeeee.....ee....eeeeeeeee........................eeeeee.----..eeeeeeeee.eee.eee..eeeeee.....eee.................---....eeeeeee............ee.......................eeeeeeee...hhhhh...eeeeee...ee...eeeee.........hhhhhheeee.....eee.hhhh......hhhhh.eeee..............hhhhhhhhhhhhhh.....hhhhh......hhhhhhee..........eeee.......eeeeeeeee---..eeee.......eeeee.....ee.hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh..hhhhhh.......ee.hhhhhh........hhhhhhhhhhhh...eeeeeeeee.........ee..eeeeeeeeee.hhhhheee...........eeeeeeeeeeee....hhhhhhhhhhhhhhhhhheeee....eeeeeeee.....eeeeeeeee......eeeeeeee.hhh................hhhhhh...hhh.eeeeeeee...ee............ee.................hhhhhhhhhhhhhh.........hhhhh...hhhhheeeeeeeee...........hhhhh...................................eeeeeeeee....eeee...........hhhhhhh......eeeeeeeee......eeeeeeee.eeeeeee.......eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2obe A   5 MLPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHDVTTDRSQRLTLRFVPVDREDNTYSYKVRYTLAVGDNRVLDMASTYFDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNTCQWTYKA----ATEKTYTYGNAPVQGINITKDGIQLGTDTDDQPIYADKTYQPEPQVGDAEWH---GTDEKYGGRALKPDTKMKPCYGSFAKPTNKEGGQANVKTGTGTTKEYDIDMAFFDNRSAAAAGLAPEIVLYTENVDLETPDTHIVYKAGTDDSSSSINLGQQAMPNRPNYIGFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNQAVDSYDPDVRIIENHGVEDELPNYCFPLDAVGRTDTYQGIKAN---QTTWTKDDSVNDANEIGKGNPFAMEINIQANLWRNFLYANVALYLPDSYKYTPANVTLPTNTNTYDYMNGRVVAPSLVDSYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKSLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRTDGASISFTSINLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKKVSITFDSSVSWPGNDRLLTPNEFEIKRTVDGEGYNVAQCNMTKDWFLVQMLAHYNIGYQGFYVPEGYKDRMYSFFRNFQPMSRQVVDEVNYKDYQAVTLAYQHNNSGFVGYLAPTMRQGQPYPANYPYPLIGKSAVTSVTQKKFLCDRVMWRIPFSSNFMSMGALTDLGQNMLYANSAHALDMNFEVDPMDESTLLYVVFEVFDVVRVHQPHRGVIEAVYLRTPFSAGN 929
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   |   144       154       164       174       184       194   |   204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404        |-  |    424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904       914       924     
                                                                                                                                                               138  143                                                194 198                                                                                                                                                                                                                    413 417                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:906
 aligned with Q8UY79_9ADEN | Q8UY79 from UniProtKB/TrEMBL  Length:933

    Alignment length:925
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885       895       905       915       925     
         Q8UY79_9ADEN     6 MLPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHDVTTDRSQRLTLRFVPVDREDNTYSYKVRYTLAVGDNRVLDMASTYFDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNTCQWTYKADGETATEKTYTYGNAPVQGINITKDGIQLGTDTDDQPIYADKTYQPEPQVGDAEWHDITGTDEKYGGRALKPDTKMKPCYGSFAKPTNKEGGQANVKTGTGTTKEYDIDMAFFDNRSAAAAGLAPEIVLYTENVDLETPDTHIVYKAGTDDSSSSINLGQQAMPNRPNYIGFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNQAVDSYDPDVRIIENHGVEDELPNYCFPLDAVGRTDTYQGIKANGTDQTTWTKDDSVNDANEIGKGNPFAMEINIQANLWRNFLYANVALYLPDSYKYTPANVTLPTNTNTYDYMNGRVVAPSLVDSYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKSLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRTDGASISFTSINLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKKVSITFDSSVSWPGNDRLLTPNEFEIKRTVDGEGYNVAQCNMTKDWFLVQMLAHYNIGYQGFYVPEGYKDRMYSFFRNFQPMSRQVVDEVNYKDYQAVTLAYQHNNSGFVGYLAPTMRQGQPYPAXYPYPLIGKSAVTSVTQKKFLCDRVMWRIPFSSNFMSMGALTDLGQNMLYANSAHALDMNFEVDPMDESTLLYVVFEVFDVVRVHQPHRGVIEAVYXRTPFSAGN 930
               SCOP domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------d2obeb1 B:616-929 automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhh...................eeee...eeee...eeeeeeeeee.....ee....eeeeeeeee........................eeeee..-----..eeeeeeee.ee..eee..eeeeee.....eee.................------..eeeeee............ee...........eee----..ee.eeeeeeee...hhhhh...eeeeee...ee...eeeee.........hhhhhheeee.....eee.hhhh......hhhhh.eeee..............hhhhhhhhhhhhhh.....hhhhh......hhhhhhee..........eeee.......eeeeeeee.----..eee.......eeeee.....ee.hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh..hhhhhh.......ee.hhhhhh........hhhhhhhhhhhh...eeeeeeeee.........ee..eeeeeeeeee.hhhhheee...........eeeeeeeeeeee....hhhhhhhhhhhhhhhhhheeee....eeeeeeee.....eeeeeeeee......eeeeeeee.hhh................hhhhhh...hhh.eeeeeeee...ee............ee.................hhhhhhhhhhhhhh.........hhhhh...hhhhheeeeeeeee...........hhhhh...................................eeeeeeeee....eeee...........hhhhhhhhhh...eeeeeeeee......eeeeeeee.eeeeeee.......eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2obe B   5 MLPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHDVTTDRSQRLTLRFVPVDREDNTYSYKVRYTLAVGDNRVLDMASTYFDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNTCQWTYKA-----TEKTYTYGNAPVQGINITKDGIQLGTDTDDQPIYADKTYQPEPQVGDAEWH------EKYGGRALKPDTKMKPCYGSFAKPTNKEGGQANVKT----TKEYDIDMAFFDNRSAAAAGLAPEIVLYTENVDLETPDTHIVYKAGTDDSSSSINLGQQAMPNRPNYIGFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNQAVDSYDPDVRIIENHGVEDELPNYCFPLDAVGRTDTYQGIKAN----TTWTKDDSVNDANEIGKGNPFAMEINIQANLWRNFLYANVALYLPDSYKYTPANVTLPTNTNTYDYMNGRVVAPSLVDSYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKSLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRTDGASISFTSINLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKKVSITFDSSVSWPGNDRLLTPNEFEIKRTVDGEGYNVAQCNMTKDWFLVQMLAHYNIGYQGFYVPEGYKDRMYSFFRNFQPMSRQVVDEVNYKDYQAVTLAYQHNNSGFVGYLAPTMRQGQPYPANYPYPLIGKSAVTSVTQKKFLCDRVMWRIPFSSNFMSMGALTDLGQNMLYANSAHALDMNFEVDPMDESTLLYVVFEVFDVVRVHQPHRGVIEAVYLRTPFSAGN 929
                                    14        24        34        44        54        64        74        84        94       104       114       124       134   |   144       154       164       174       184       194      |204       214       224       234 |    |244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404        |-   |   424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904       914       924     
                                                                                                                                                               138   144                                               194    201                                236  241                                                                                                                                                                         413  418                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               


Chain C from PDB  Type:PROTEIN  Length:909
 aligned with Q8UY79_9ADEN | Q8UY79 from UniProtKB/TrEMBL  Length:933

    Alignment length:925
                                    15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195       205       215       225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395       405       415       425       435       445       455       465       475       485       495       505       515       525       535       545       555       565       575       585       595       605       615       625       635       645       655       665       675       685       695       705       715       725       735       745       755       765       775       785       795       805       815       825       835       845       855       865       875       885       895       905       915       925     
         Q8UY79_9ADEN     6 MLPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHDVTTDRSQRLTLRFVPVDREDNTYSYKVRYTLAVGDNRVLDMASTYFDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNTCQWTYKADGETATEKTYTYGNAPVQGINITKDGIQLGTDTDDQPIYADKTYQPEPQVGDAEWHDITGTDEKYGGRALKPDTKMKPCYGSFAKPTNKEGGQANVKTGTGTTKEYDIDMAFFDNRSAAAAGLAPEIVLYTENVDLETPDTHIVYKAGTDDSSSSINLGQQAMPNRPNYIGFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNQAVDSYDPDVRIIENHGVEDELPNYCFPLDAVGRTDTYQGIKANGTDQTTWTKDDSVNDANEIGKGNPFAMEINIQANLWRNFLYANVALYLPDSYKYTPANVTLPTNTNTYDYMNGRVVAPSLVDSYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKSLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRTDGASISFTSINLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKKVSITFDSSVSWPGNDRLLTPNEFEIKRTVDGEGYNVAQCNMTKDWFLVQMLAHYNIGYQGFYVPEGYKDRMYSFFRNFQPMSRQVVDEVNYKDYQAVTLAYQHNNSGFVGYLAPTMRQGQPYPAXYPYPLIGKSAVTSVTQKKFLCDRVMWRIPFSSNFMSMGALTDLGQNMLYANSAHALDMNFEVDPMDESTLLYVVFEVFDVVRVHQPHRGVIEAVYXRTPFSAGN 930
               SCOP domains -----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------d2obec1 C:616-929 automated matches                                                                                                                                                                                                                                                                                        SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhh.....hhhhhhhhhhhhhhhhhh....hhhhh...................eeee...eeee...eeeeeeeeee.....ee....eeeeeeeee........................eeeee.------..eeeeeeee.ee..eee..eeeeee.....eee.................------..eeeeee............ee.......................eeeeeeee...hhhhh...eeeeee...ee...eeeee.........hhhhhheeee.....eee.hhhh............eeee..............hhhhhhhhhhhhhh.....hhhhh......hhhhhhee..........eeee.......eeeeeeee.----..eee.......eeeee.....ee.hhhhhhhhhhhhhhhhhhhhhhhh.............hhhhhhhh..hhhhhh.......ee.hhhhhh........hhhhhhhhhhhh...eeeeeeeee.........ee..eeeeeeeeee.hhhhheee...........eeeeeeeeeeee....hhhhhhhhhhhhhhhhhheeee....eeeeeeee.....eeeeeeeee......eeeeeeee.hhh................hhhhhh...hhh.eeeeeeee...ee............ee.................hhhhhhhhhhhhhh.........hhhhh...hhhhheeeeeeeee...........hhhhh...................................eeeeeeeee....eeee...........hhhhhhhhhh...eeeeeeeee......eeeeeeee.eeeeeee.......eeeeeee...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2obe C   5 MLPQWAYMHIAGQDASEYLSPGLVQFARATDTYFSLGNKFRNPTVAPTHDVTTDRSQRLTLRFVPVDREDNTYSYKVRYTLAVGDNRVLDMASTYFDIRGVLDRGPSFKPYSGTAYNSLAPKGAPNTCQWTYK------TEKTYTYGNAPVQGINITKDGIQLGTDTDDQPIYADKTYQPEPQVGDAEWH------EKYGGRALKPDTKMKPCYGSFAKPTNKEGGQANVKTGTGTTKEYDIDMAFFDNRSAAAAGLAPEIVLYTENVDLETPDTHIVYKAGTDDSSSSINLGQQAMPNRPNYIGFRDNFIGLMYYNSTGNMGVLAGQASQLNAVVDLQDRNTELSYQLLLDSLGDRTRYFSMWNQAVDSYDPDVRIIENHGVEDELPNYCFPLDAVGRTDTYQGIKAN----TTWTKDDSVNDANEIGKGNPFAMEINIQANLWRNFLYANVALYLPDSYKYTPANVTLPTNTNTYDYMNGRVVAPSLVDSYINIGARWSLDPMDNVNPFNHHRNAGLRYRSMLLGNGRYVPFHIQVPQKFFAIKSLLLLPGSYTYEWNFRKDVNMILQSSLGNDLRTDGASISFTSINLYATFFPMAHNTASTLEAMLRNDTNDQSFNDYLSAANMLYPIPANATNVPISIPSRNWAAFRGWSFTRLKTKETPSLGSGFDPYFVYSGSIPYLDGTFYLNHTFKKVSITFDSSVSWPGNDRLLTPNEFEIKRTVDGEGYNVAQCNMTKDWFLVQMLAHYNIGYQGFYVPEGYKDRMYSFFRNFQPMSRQVVDEVNYKDYQAVTLAYQHNNSGFVGYLAPTMRQGQPYPANYPYPLIGKSAVTSVTQKKFLCDRVMWRIPFSSNFMSMGALTDLGQNMLYANSAHALDMNFEVDPMDESTLLYVVFEVFDVVRVHQPHRGVIEAVYLRTPFSAGN 929
                                    14        24        34        44        54        64        74        84        94       104       114       124       134  |    144       154       164       174       184       194      |204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404        |-   |   424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754       764       774       784       794       804       814       824       834       844       854       864       874       884       894       904       914       924     
                                                                                                                                                              137    144                                               194    201                                                                                                                                                                                                                 413  418
   Legend:   → Mismatch (orange background)
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 Classification and Annotation

(-) SCOP Domains  (1, 3)

Asymmetric/Biological Unit
(-)
Class: All beta proteins (24004)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2OBE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2OBE)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)
Chain A,B,C   (Q8UY79_9ADEN | Q8UY79)
molecular function
    GO:0005198    structural molecule activity    The action of a molecule that contributes to the structural integrity of a complex or its assembly within or outside a cell.
cellular component
    GO:0039623    T=25 icosahedral viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles where the subunits (capsomeres) are arranged to form an icosahedron with T=25 symmetry. The T=25 capsid is composed of 12 pentameric and 240 hexameric capsomeres.
    GO:0042025    host cell nucleus    A membrane-bounded organelle as it is found in the host cell in which chromosomes are housed and replicated. The host is defined as the larger of the organisms involved in a symbiotic interaction.
    GO:0019028    viral capsid    The protein coat that surrounds the infective nucleic acid in some virus particles. It comprises numerous regularly arranged subunits, or capsomeres.
    GO:0019012    virion    The complete fully infectious extracellular virus particle.

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  2obe
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

(no "Entries Sharing at Least One Protein Chain" available for 2OBE)

(-) Related Entries Specified in the PDB File

1hx6 BACTERIOPHAGE PRD1 MAJOR COAT PROTEIN, P3
1p2z HUMAN ADENOVIRUS TYPE 2 HEXON
1p30 HUMAN ADENOVIRUS TYPE 5 HEXON
2iny AVIAN ADENOVIRUS (CELO) HEXON