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2OBE
Asym. Unit
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Asym.Unit (478 KB)
Biol.Unit 1 (466 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF CHIMPANZEE ADENOVIRUS (TYPE 68/SIMIAN 25) MAJOR COAT PROTEIN HEXON
Authors
:
F. Xue, J. J. Rux, R. M. Burnett
Date
:
18 Dec 06 (Deposition) - 24 Jul 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C
Biol. Unit 1: A,B,C (1x)
Keywords
:
Trimer, Double-Barrel Subunit, Viral Jellyroll, Base, Hypervariable Tower, Viral Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. L. Pichla-Gollon, M. Drinker, X. Zhou, F. Xue, J. J. Rux, G. -P. Gao, J. M. Wilson, H. C. J. Ertl, R. M. Burnett, J. M. Bergelson
Structure-Based Identification Of A Major Neutralizing Site In An Adenovirus Hexon
J. Virol. V. 81 1680 2007
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 46)
Info
All Hetero Components
1a: DIHYDROGENPHOSPHATE ION (2HPa)
1b: DIHYDROGENPHOSPHATE ION (2HPb)
1c: DIHYDROGENPHOSPHATE ION (2HPc)
1d: DIHYDROGENPHOSPHATE ION (2HPd)
1e: DIHYDROGENPHOSPHATE ION (2HPe)
1f: DIHYDROGENPHOSPHATE ION (2HPf)
1g: DIHYDROGENPHOSPHATE ION (2HPg)
1h: DIHYDROGENPHOSPHATE ION (2HPh)
1i: DIHYDROGENPHOSPHATE ION (2HPi)
1j: DIHYDROGENPHOSPHATE ION (2HPj)
1k: DIHYDROGENPHOSPHATE ION (2HPk)
1l: DIHYDROGENPHOSPHATE ION (2HPl)
1m: DIHYDROGENPHOSPHATE ION (2HPm)
1n: DIHYDROGENPHOSPHATE ION (2HPn)
1o: DIHYDROGENPHOSPHATE ION (2HPo)
1p: DIHYDROGENPHOSPHATE ION (2HPp)
1q: DIHYDROGENPHOSPHATE ION (2HPq)
1r: DIHYDROGENPHOSPHATE ION (2HPr)
1s: DIHYDROGENPHOSPHATE ION (2HPs)
1t: DIHYDROGENPHOSPHATE ION (2HPt)
1u: DIHYDROGENPHOSPHATE ION (2HPu)
1v: DIHYDROGENPHOSPHATE ION (2HPv)
2a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
2b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
2c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
2d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
2e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
2f: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDf)
2g: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDg)
2h: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDh)
2i: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDi)
2j: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDj)
2k: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDk)
2l: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDl)
2m: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDm)
2n: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDn)
2o: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDo)
2p: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDp)
2q: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDq)
2r: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDr)
2s: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDs)
2t: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDt)
2u: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDu)
2v: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDv)
2w: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDw)
2x: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDx)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
2HP
22
Ligand/Ion
DIHYDROGENPHOSPHATE ION
2
MPD
24
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
close Hetero Component info
]
Sites
(44, 44)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
28: DC1 (SOFTWARE)
29: DC2 (SOFTWARE)
30: DC3 (SOFTWARE)
31: DC4 (SOFTWARE)
32: DC5 (SOFTWARE)
33: DC6 (SOFTWARE)
34: DC7 (SOFTWARE)
35: DC8 (SOFTWARE)
36: DC9 (SOFTWARE)
37: EC1 (SOFTWARE)
38: EC2 (SOFTWARE)
39: EC3 (SOFTWARE)
40: EC4 (SOFTWARE)
41: EC5 (SOFTWARE)
42: EC6 (SOFTWARE)
43: EC7 (SOFTWARE)
44: EC8 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:539 , ASP B:730 , ASN B:735 , LYS B:842 , HOH B:1774 , HOH B:2054
BINDING SITE FOR RESIDUE 2HP B 1601
02
AC2
SOFTWARE
THR A:57 , ASP A:58 , ARG A:59 , ALA A:603 , HIS A:604 , ASN A:605 , HOH A:2190
BINDING SITE FOR RESIDUE 2HP A 1602
03
AC3
SOFTWARE
PRO A:110 , ASP A:482
BINDING SITE FOR RESIDUE 2HP A 1603
04
AC4
SOFTWARE
HIS B:539 , ASP C:730 , ASN C:735 , LYS C:842 , HOH C:1993
BINDING SITE FOR RESIDUE 2HP C 1604
05
AC5
SOFTWARE
ARG B:650 , ASN B:651 , PRO B:924 , PHE B:925 , SER B:926 , HOH B:2163
BINDING SITE FOR RESIDUE 2HP B 1605
06
AC6
SOFTWARE
THR B:57 , ASP B:58 , ARG B:59 , HIS B:604 , ASN B:605
BINDING SITE FOR RESIDUE 2HP B 1606
07
AC7
SOFTWARE
ASP B:360 , ARG B:363 , HOH B:1783 , HOH B:1791 , HOH B:2055 , HOH B:2118 , HOH B:2121 , GLY C:766
BINDING SITE FOR RESIDUE 2HP B 1607
08
AC8
SOFTWARE
ASN B:755 , GLN B:759 , MET B:860 , HOH B:1954 , THR C:36 , TYR C:37
BINDING SITE FOR RESIDUE 2HP B 1608
09
AC9
SOFTWARE
SER A:24 , ARG B:615 , ASN B:616 , THR B:618 , HIS B:912 , ARG B:913 , 2HP B:1615
BINDING SITE FOR RESIDUE 2HP B 1609
10
BC1
SOFTWARE
ASP A:730 , ASN A:735 , LYS A:842 , HOH A:2162 , HIS C:539
BINDING SITE FOR RESIDUE 2HP A 1610
11
BC2
SOFTWARE
PRO C:110 , ASP C:482 , HOH C:2085
BINDING SITE FOR RESIDUE 2HP C 1611
12
BC3
SOFTWARE
ARG B:519 , HIS C:385
BINDING SITE FOR RESIDUE 2HP B 1612
13
BC4
SOFTWARE
GLY A:766 , ASP C:360 , HOH C:1792 , HOH C:1967 , HOH C:2130
BINDING SITE FOR RESIDUE 2HP C 1613
14
BC5
SOFTWARE
ASP B:617 , PRO B:911 , HIS B:912 , HOH B:2067
BINDING SITE FOR RESIDUE 2HP B 1614
15
BC6
SOFTWARE
SER A:24 , GLY A:26 , SER B:608 , GLU B:611 , ALA B:612 , 2HP B:1609 , HOH B:2043 , HOH B:2200
BINDING SITE FOR RESIDUE 2HP B 1615
16
BC7
SOFTWARE
THR B:665 , THR B:668 , ASP B:676 , TYR B:678 , PHE B:679
BINDING SITE FOR RESIDUE 2HP B 1616
17
BC8
SOFTWARE
ASN C:499 , TRP C:504 , LEU C:506 , ASP C:507 , PRO C:508 , ARG C:783 , HOH C:1969
BINDING SITE FOR RESIDUE 2HP C 1617
18
BC9
SOFTWARE
THR C:57 , ASP C:58 , ARG C:59 , ALA C:603 , HIS C:604 , ASN C:605
BINDING SITE FOR RESIDUE 2HP C 1618
19
CC1
SOFTWARE
ARG A:615 , HIS A:912 , ARG A:913 , HOH A:2106
BINDING SITE FOR RESIDUE 2HP A 1619
20
CC2
SOFTWARE
THR A:362 , VAL A:372 , SER A:374 , MET A:771 , ARG A:848 , HOH A:2099 , HOH A:2261
BINDING SITE FOR RESIDUE 2HP A 1620
21
CC3
SOFTWARE
ALA B:875 , ASN B:876 , SER B:877 , HIS B:879 , MPD B:1724
BINDING SITE FOR RESIDUE 2HP B 1621
22
CC4
SOFTWARE
ASN B:499 , TRP B:504 , LEU B:506 , ASP B:507 , PRO B:508 , ARG B:783 , MPD B:1719
BINDING SITE FOR RESIDUE 2HP B 1622
23
CC5
SOFTWARE
ASN C:755 , GLN C:759 , TYR C:762 , HOH C:1716
BINDING SITE FOR RESIDUE MPD C 1701
24
CC6
SOFTWARE
ALA A:31 , ASP A:35 , GLY A:41 , HOH A:1815 , HOH A:1959 , HOH A:2076 , HOH A:2157
BINDING SITE FOR RESIDUE MPD A 1702
25
CC7
SOFTWARE
ASN B:226 , LYS B:227 , GLU B:228 , LYS B:242 , GLN C:795
BINDING SITE FOR RESIDUE MPD B 1703
26
CC8
SOFTWARE
ASN A:513 , ASN A:516 , LYS A:664 , LYS A:666 , GLU A:667 , HOH A:2191
BINDING SITE FOR RESIDUE MPD A 1704
27
CC9
SOFTWARE
TYR A:467 , LEU A:799
BINDING SITE FOR RESIDUE MPD A 1705
28
DC1
SOFTWARE
ASN A:624 , ASP A:625 , TYR A:626 , SER A:628 , ARG A:656 , ALA A:864
BINDING SITE FOR RESIDUE MPD A 1706
29
DC2
SOFTWARE
ASP B:35 , GLY B:41 , HOH B:2256
BINDING SITE FOR RESIDUE MPD B 1707
30
DC3
SOFTWARE
ASP A:71 , GLU A:73 , PRO B:69 , ARG B:72
BINDING SITE FOR RESIDUE MPD B 1708
31
DC4
SOFTWARE
ASN B:513 , ASN B:516 , LYS B:664 , LYS B:666 , GLU B:667 , HOH B:1902 , HOH B:2218
BINDING SITE FOR RESIDUE MPD B 1709
32
DC5
SOFTWARE
TYR B:465 , TYR B:467 , HOH B:2075 , HOH B:2137
BINDING SITE FOR RESIDUE MPD B 1710
33
DC6
SOFTWARE
ASN B:624 , TYR B:626 , SER B:628 , ARG B:656
BINDING SITE FOR RESIDUE MPD B 1711
34
DC7
SOFTWARE
GLY C:41 , HOH C:1934
BINDING SITE FOR RESIDUE MPD C 1712
35
DC8
SOFTWARE
ASN C:513 , ASN C:516 , LYS C:664 , LYS C:666 , GLU C:667 , TYR C:693 , HOH C:2008 , HOH C:2068
BINDING SITE FOR RESIDUE MPD C 1713
36
DC9
SOFTWARE
ASN C:624 , TYR C:626 , SER C:628 , ARG C:656 , ALA C:864
BINDING SITE FOR RESIDUE MPD C 1715
37
EC1
SOFTWARE
ASP A:360 , HOH A:2188 , GLY B:766 , HOH B:1988 , HOH B:2251
BINDING SITE FOR RESIDUE MPD A 1716
38
EC2
SOFTWARE
GLN A:795 , LYS C:227
BINDING SITE FOR RESIDUE MPD A 1717
39
EC3
SOFTWARE
PRO B:110 , ASP B:482 , HOH B:1747
BINDING SITE FOR RESIDUE MPD B 1718
40
EC4
SOFTWARE
LEU B:493 , ILE B:498 , 2HP B:1622
BINDING SITE FOR RESIDUE MPD B 1719
41
EC5
SOFTWARE
ASN A:253 , SER A:255 , ASP C:405 , THR C:406
BINDING SITE FOR RESIDUE MPD A 1720
42
EC6
SOFTWARE
ASN B:413 , THR B:418
BINDING SITE FOR RESIDUE MPD B 1722
43
EC7
SOFTWARE
ASP B:71 , GLU B:73 , LYS B:80 , GLU B:562
BINDING SITE FOR RESIDUE MPD B 1723
44
EC8
SOFTWARE
PHE B:705 , 2HP B:1621
BINDING SITE FOR RESIDUE MPD B 1724
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(0, 0)
Info
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 3)
Info
All SCOP Domains
1a: SCOP_d2obea1 (A:616-929)
1b: SCOP_d2obeb1 (B:616-929)
1c: SCOP_d2obec1 (C:616-929)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
Nucleoplasmin-like/VP (viral coat and capsid proteins)
(278)
Superfamily
:
Group II dsDNA viruses VP
(10)
Family
:
automated matches
(1)
Protein domain
:
automated matches
(1)
Simian adenovirus 25 [TaxId: 175567]
(1)
1a
d2obea1
A:616-929
1b
d2obeb1
B:616-929
1c
d2obec1
C:616-929
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
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Sorry, no Info available
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Pfam Domains
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