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(-) Description

Title :  SOLUTION STRUCTURE OF THE N-TERMINAL LIM DOMAIN OF MLP/CRP3
 
Authors :  T. Schallus, C. Muhle-Goll, C. Edlich
Date :  28 Nov 06  (Deposition) - 11 Dec 07  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (19x)
Keywords :  Lim Domain, Zinc Binding, Crp, Mlp, Metal Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  T. Schallus, G. Stier, K. Feher, C. Muhle-Goll
Structure Of The Muscular Lim Protein Mlp And Its Interaction With Actinin
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - MUSCLE LIM PROTEIN
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System PlasmidPET24
    Expression System StrainBL21 DE3 PLYSS
    Expression System Taxid562
    Expression System Vector TypePLASMID
    FragmentLIM ZINC-BINDING DOMAIN 1, RESIDUES 7-66
    GeneCSRP3, CLP, MLP
    Organism CommonHUMAN
    Organism ScientificHOMO SAPIENS
    Organism Taxid9606
    SynonymCYSTEINE AND GLYCINE-RICH PROTEIN 3, CYSTEINE- RICH PROTEIN 3, CRP3, LIM DOMAIN PROTEIN, CARDIAC

 Structural Features

(-) Chains, Units

  
NMR Structure (19x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

NMR Structure (1, 2)
No.NameCountTypeFull Name
1ZN2Ligand/IonZINC ION

(-) Sites  (2, 2)

NMR Structure (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:37 , CYS A:40 , CYS A:58 , CYS A:61BINDING SITE FOR RESIDUE ZN A 86
2AC2SOFTWARECYS A:10 , CYS A:13 , HIS A:31 , CYS A:34BINDING SITE FOR RESIDUE ZN A 87

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2O10)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2O10)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (2, 2)

NMR Structure (2, 2)
  dbSNPPDB
No.SourceVariant IDVariantUniProt IDStatusIDChainVariant
1UniProtVAR_045932L44PCSRP3_HUMANDisease (CMH12)104894205AL44P
2UniProtVAR_045934C58GCSRP3_HUMANDisease (CMH12)104894204AC58G

  SNP/SAP Summary Statistics (UniProtKB/Swiss-Prot)

(-) PROSITE Motifs  (2, 2)

NMR Structure (2, 2)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1LIM_DOMAIN_2PS50023 LIM domain profile.CSRP3_HUMAN8-68
118-178
  1A:8-66
-
2LIM_DOMAIN_1PS00478 LIM zinc-binding domain signature.CSRP3_HUMAN10-44
120-154
  1A:10-44
-

(-) Exons   (2, 2)

NMR Structure (2, 2)
 ENSEMBLUniProtKBPDB
No.Transcript IDExonExon IDGenome LocationLengthIDLocationLengthCountLocationLength
1.2ENST000002659682ENSE00001411731chr11:19223589-1922350189CSRP3_HUMAN-00--
1.3ENST000002659683ENSE00000997759chr11:19214023-19213884140CSRP3_HUMAN1-38381A:7-3832
1.4ENST000002659684ENSE00000707241chr11:19209851-19209683169CSRP3_HUMAN38-94571A:38-6629
1.5ENST000002659685ENSE00000707240chr11:19207895-19207763133CSRP3_HUMAN94-138450--
1.6ENST000002659686ENSE00001746098chr11:19206592-1920649994CSRP3_HUMAN139-170320--
1.7bENST000002659687bENSE00001128665chr11:19204293-19203578716CSRP3_HUMAN170-194250--

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it)
Chain A from PDB  Type:PROTEIN  Length:60
 aligned with CSRP3_HUMAN | P50461 from UniProtKB/Swiss-Prot  Length:194

    Alignment length:60
                                    16        26        36        46        56        66
           CSRP3_HUMAN    7 GAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRY 66
               SCOP domains d2o10a1 A:7-35               d2o10a2 A:36-66                 SCOP domains
               CATH domains 2o10A00 A:7-66 Cysteine Rich Protein                         CATH domains
               Pfam domains ---LIM-2o10A01 A:10-66                                       Pfam domains
         Sec.struct. author .ee......eehhh.eeee..eeee..................eee..eeehhhhhhhhh Sec.struct. author
                 SAPs(SNPs) -------------------------------------P-------------G-------- SAPs(SNPs)
                PROSITE (1) -LIM_DOMAIN_2  PDB: A:8-66 UniProt: 8-68                     PROSITE (1)
                PROSITE (2) ---LIM_DOMAIN_1  PDB: A:10-44         ---------------------- PROSITE (2)
           Transcript 1 (1) Exon 1.3  PDB: A:7-38           ---------------------------- Transcript 1 (1)
           Transcript 1 (2) -------------------------------Exon 1.4  PDB: A:38-66        Transcript 1 (2)
                  2o10 A  7 GAKCGACEKTVYHAEEIQCNGRSFHKTCFHCMACRKALDSTTVAAHESEIYCKVCYGRRY 66
                                    16        26        36        46        56        66

   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (1, 1)

NMR Structure

(-) Gene Ontology  (28, 28)

NMR Structure(hide GO term definitions)
Chain A   (CSRP3_HUMAN | P50461)
molecular function
    GO:0042805    actinin binding    Interacting selectively and non-covalently with actinin, any member of a family of proteins that crosslink F-actin.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0008307    structural constituent of muscle    The action of a molecule that contributes to the structural integrity of a muscle fiber.
    GO:0031433    telethonin binding    Interacting selectively and non-covalently with telethonin, a protein found in the Z disc of striated muscle and which is a substrate of the titin kinase.
    GO:0008270    zinc ion binding    Interacting selectively and non-covalently with zinc (Zn) ions.
biological process
    GO:0001974    blood vessel remodeling    The reorganization or renovation of existing blood vessels.
    GO:0060048    cardiac muscle contraction    Muscle contraction of cardiac muscle tissue.
    GO:0003300    cardiac muscle hypertrophy    The enlargement or overgrowth of all or part of the heart muscle due to an increase in size of cardiac muscle cells without cell division.
    GO:0048738    cardiac muscle tissue development    The process whose specific outcome is the progression of cardiac muscle over time, from its formation to the mature structure.
    GO:0055003    cardiac myofibril assembly    The process whose specific outcome is the progression of the cardiac myofibril over time, from its formation to the mature structure. A cardiac myofibril is a myofibril specific to cardiac muscle cells.
    GO:0030154    cell differentiation    The process in which relatively unspecialized cells, e.g. embryonic or regenerative cells, acquire specialized structural and/or functional features that characterize the cells, tissues, or organs of the mature organism or some other relatively stable phase of the organism's life history. Differentiation includes the processes involved in commitment of a cell to a specific fate and its subsequent development to the mature state.
    GO:0006874    cellular calcium ion homeostasis    Any process involved in the maintenance of an internal steady state of calcium ions at the level of a cell.
    GO:0035995    detection of muscle stretch    The series of events by which a muscle stretch stimulus is received by a cell and converted into a molecular signal.
    GO:0007275    multicellular organism development    The biological process whose specific outcome is the progression of a multicellular organism over time from an initial condition (e.g. a zygote or a young adult) to a later condition (e.g. a multicellular animal or an aged adult).
    GO:0007517    muscle organ development    The process whose specific outcome is the progression of the muscle over time, from its formation to the mature structure. The muscle is an organ consisting of a tissue made up of various elongated cells that are specialized to contract and thus to produce movement and mechanical work.
    GO:1903919    negative regulation of actin filament severing    Any process that stops, prevents or reduces the frequency, rate or extent of actin filament severing.
    GO:0045662    negative regulation of myoblast differentiation    Any process that stops, prevents, or reduces the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
    GO:1903920    positive regulation of actin filament severing    Any process that activates or increases the frequency, rate or extent of actin filament severing.
    GO:0045663    positive regulation of myoblast differentiation    Any process that activates or increases the frequency, rate or extent of myoblast differentiation. A myoblast is a mononucleate cell type that, by fusion with other myoblasts, gives rise to the myotubes that eventually develop into skeletal muscle fibers.
    GO:0045944    positive regulation of transcription from RNA polymerase II promoter    Any process that activates or increases the frequency, rate or extent of transcription from an RNA polymerase II promoter.
    GO:0033365    protein localization to organelle    A process in which a protein is transported to, or maintained in, a location within an organelle.
    GO:0002026    regulation of the force of heart contraction    Any process that modulates the extent of heart contraction, changing the force with which blood is propelled.
    GO:0007519    skeletal muscle tissue development    The developmental sequence of events leading to the formation of adult skeletal muscle tissue. The main events are: the fusion of myoblasts to form myotubes that increase in size by further fusion to them of myoblasts, the formation of myofibrils within their cytoplasm and the establishment of functional neuromuscular junctions with motor neurons. At this stage they can be regarded as mature muscle fibers.
cellular component
    GO:0030018    Z disc    Platelike region of a muscle sarcomere to which the plus ends of actin filaments are attached.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0005856    cytoskeleton    Any of the various filamentous elements that form the internal framework of cells, and typically remain after treatment of the cells with mild detergent to remove membrane constituents and soluble components of the cytoplasm. The term embraces intermediate filaments, microfilaments, microtubules, the microtrabecular lattice, and other structures characterized by a polymeric filamentous nature and long-range order within the cell. The various elements of the cytoskeleton not only serve in the maintenance of cellular shape but also have roles in other cellular functions, including cellular movement, cell division, endocytosis, and movement of organelles.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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        CSRP3_HUMAN | P504612o13

(-) Related Entries Specified in the PDB File

2o13 RELATED ID: 15059 RELATED DB: BMRB