2NYA - JenaLib

Asym.Unit - manually (Jmol Viewer)

Asymmetric Unit (Jmol Viewer)

Asym. Unit - sites (Jmol Viewer)

Biological Unit 1 (Jmol Viewer)

Biol. Unit 1 - sites (Jmol Viewer)

Biological Unit 2 (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF THE PERIPLASMIC NITRATE REDUCTASE (NAP) FROM ESCHERICHIA COLI

Authors :   B. J. N. Jepson, D. J. Richardson, A. M. Hemmings

Date :   20 Nov 06 (Deposition) - 05 Dec 06 (Release) - 24 Mar 09 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   2.50

Chains :   Asym. Unit : A,F
Biol. Unit 1: A  (1x)
Biol. Unit 2: F  (1x)

Keywords :   Molybdenum, Nitrate Reductase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   B. J. Jepson, S. Mohan, T. A. Clarke, A. J. Gates, J. A. Cole, C. S. Butler, J. N. Butt, A. M. Hemmings, D. J. Richardson
Spectropotentiometric And Structural Analysis Of The Periplasmic Nitrate Reductase From Escherichia Coli
J. Biol. Chem. V. 282 6425 2007
PubMed-ID: 17130127 | Reference-DOI: 10.1074/JBC.M607353200
(for further references see the PDB file header)

Molecule 1 - PERIPLASMIC NITRATE REDUCTASE
	Chains	:	A, F
	EC Number	:	1.7.99.4
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Plasmid	:	PJG460
	Expression System Strain	:	LCB2048
	Expression System Taxid	:	562
	Expression System Vector Type	:	PLASMID
	Gene	:	NAPA
	Organism Scientific	:	ESCHERICHIA COLI K12
	Organism Taxid	:	83333
	Strain	:	K-12

		1	2
Asymmetric Unit	:	A	F
Biological Unit 1 (1x)	:	A
Biological Unit 2 (1x)	:		F

Summary Information (see also Sequences/Alignments below)

Asymmetric Unit (3, 8)

No.	Name	Count	Type	Full Name
1	6MO	2	Ligand/Ion	MOLYBDENUM(VI) ION
2	MGD	4	Ligand/Ion	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
3	SF4	2	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 1 (3, 4)

No.	Name	Count	Type	Full Name
1	6MO	1	Ligand/Ion	MOLYBDENUM(VI) ION
2	MGD	2	Ligand/Ion	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
3	SF4	1	Ligand/Ion	IRON/SULFUR CLUSTER

Biological Unit 2 (3, 4)

No.	Name	Count	Type	Full Name
1	6MO	1	Ligand/Ion	MOLYBDENUM(VI) ION
2	MGD	2	Ligand/Ion	2-AMINO-5,6-DIMERCAPTO-7-METHYL-3,7,8A,9-TETRAHYDRO-8-OXA-1,3,9,10-TETRAAZA-ANTHRACEN-4-ONE GUANOSINEDINUCLEOTIDE
3	SF4	1	Ligand/Ion	IRON/SULFUR CLUSTER

Asymmetric Unit (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	CYS A:10 , PHE A:12 , CYS A:13 , CYS A:17 , CYS A:45 , LYS A:47 , GLY A:48 , PRO A:185	BINDING SITE FOR RESIDUE SF4 A 2001
2	AC2	SOFTWARE	CYS A:143 , MGD A:3001 , MGD A:4001 , HOH A:4003	BINDING SITE FOR RESIDUE 6MO A 2002
3	AC3	SOFTWARE	ARG A:11 , GLN A:114 , ASN A:139 , CYS A:143 , GLN A:340 , GLN A:374 , CYS A:444 , THR A:445 , ASN A:446 , ALA A:450 , SER A:472 , ASP A:473 , PRO A:474 , THR A:477 , THR A:489 , ALA A:490 , MET A:491 , LYS A:495 , ASP A:522 , THR A:682 , GLY A:683 , ARG A:684 , TRP A:689 , HIS A:690 , THR A:691 , SER A:693 , PHE A:758 , ASN A:766 , PHE A:782 , LYS A:783 , 6MO A:2002 , MGD A:4001 , HOH A:4032 , HOH A:4188 , HOH A:4231	BINDING SITE FOR RESIDUE MGD A 3001
4	AC4	SOFTWARE	CYS A:13 , LYS A:47 , CYS A:143 , TRP A:176 , GLY A:177 , ASN A:179 , GLU A:182 , MET A:183 , SER A:207 , THR A:208 , TYR A:209 , HIS A:211 , PHE A:223 , GLN A:226 , ASP A:228 , THR A:335 , MET A:336 , GLY A:337 , PHE A:338 , GLY A:373 , GLN A:374 , SER A:681 , GLY A:683 , ARG A:684 , VAL A:685 , LEU A:686 , HIS A:688 , TRP A:689 , HIS A:690 , TYR A:755 , LYS A:783 , LYS A:784 , 6MO A:2002 , MGD A:3001 , HOH A:4016 , HOH A:4039 , HOH A:4123 , HOH A:4151 , HOH A:4250	BINDING SITE FOR RESIDUE MGD A 4001
5	AC5	SOFTWARE	CYS F:10 , PHE F:12 , CYS F:13 , CYS F:17 , CYS F:45 , LYS F:47 , GLY F:48 , PRO F:185	BINDING SITE FOR RESIDUE SF4 F 5001
6	AC6	SOFTWARE	CYS F:143 , MGD F:6001 , MGD F:7001 , HOH F:7035	BINDING SITE FOR RESIDUE 6MO F 5002
7	AC7	SOFTWARE	ARG F:11 , GLN F:114 , ASN F:139 , CYS F:143 , GLN F:340 , GLN F:374 , CYS F:444 , THR F:445 , ASN F:446 , ALA F:450 , SER F:472 , ASP F:473 , PRO F:474 , THR F:477 , THR F:489 , ALA F:490 , MET F:491 , LYS F:495 , ASP F:522 , THR F:682 , GLY F:683 , ARG F:684 , TRP F:689 , HIS F:690 , THR F:691 , SER F:693 , PHE F:758 , ASN F:766 , PHE F:782 , LYS F:783 , 6MO F:5002 , MGD F:7001 , HOH F:7064 , HOH F:7242	BINDING SITE FOR RESIDUE MGD F 6001
8	AC8	SOFTWARE	CYS F:13 , LYS F:47 , CYS F:143 , TRP F:176 , GLY F:177 , ASN F:179 , GLU F:182 , MET F:183 , SER F:207 , THR F:208 , TYR F:209 , HIS F:211 , PHE F:223 , GLN F:226 , ASP F:228 , THR F:335 , MET F:336 , GLY F:337 , PHE F:338 , GLY F:373 , GLN F:374 , SER F:681 , GLY F:683 , ARG F:684 , VAL F:685 , LEU F:686 , HIS F:688 , TRP F:689 , HIS F:690 , TYR F:755 , LYS F:783 , LYS F:784 , 6MO F:5002 , MGD F:6001 , HOH F:7071 , HOH F:7171 , HOH F:7259	BINDING SITE FOR RESIDUE MGD F 7001

(no "SS Bond" information available for 2NYA)

Asymmetric Unit

No.	Residues
1	Trp A:622	-	Pro A:623
2	Trp F:622	-	Pro F:623

(no "SAP(SNP)/Variant" information available for 2NYA)

Asymmetric Unit (2, 4)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	4FE4S_MOW_BIS_MGD	PS51669	Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile.	NAPA_ECOLI	39-95	2	A:3-59 F:3-59
2	MOLYBDOPTERIN_PROK_1	PS00551	Prokaryotic molybdopterin oxidoreductases signature 1.	NAPA_ECOLI	44-61	2	A:8-25 F:8-25

Biological Unit 1 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	4FE4S_MOW_BIS_MGD	PS51669	Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile.	NAPA_ECOLI	39-95	1	A:3-59 -
2	MOLYBDOPTERIN_PROK_1	PS00551	Prokaryotic molybdopterin oxidoreductases signature 1.	NAPA_ECOLI	44-61	1	A:8-25 -

Biological Unit 2 (2, 2)

	PROSITE			UniProtKB		PDB
No.	ID	AC	Description	ID	Location	Count	Location
1	4FE4S_MOW_BIS_MGD	PS51669	Prokaryotic molybdopterin oxidoreductases 4Fe-4S domain profile.	NAPA_ECOLI	39-95	1	- F:3-59
2	MOLYBDOPTERIN_PROK_1	PS00551	Prokaryotic molybdopterin oxidoreductases signature 1.	NAPA_ECOLI	44-61	1	- F:8-25

(no "Exon" information available for 2NYA)

Asymmetric Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
	(details for a mapped element are shown in a popup box when the mouse pointer rests over it)

Chain A from PDB  Type:PROTEIN  Length:791
 aligned with NAPA_ECOLI | P33937 from UniProtKB/Swiss-Prot  Length:828

    Alignment length:791
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826 
           NAPA_ECOLI    37 EAIKWDKAPCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAAQLVNKLTLDATDPLSKETDFKKCAVKLEK 827
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----------------------------------------------------------2nyaA02 A:60-138,A:376-491,A:516-587  [code=3.40.50.740, no name defined]      2nyaA03 A:139-375,A:631-667 Dimethylsulfoxide Reductase, domain 2                                                                                                                                                                            2nyaA02 A:60-138,A:376-491,A:516-587  [code=3.40.50.740, no name defined]                                           ------------------------2nyaA02 A:60-138,A:376-491,A:516-587                                    -------------------------------------------2nyaA03 A:139-375,A:631-667          2nyaA04 A:668-791  [code=2.40.40.20, no name defined]                                                                        CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee........eeeeeee..eeeeeee...........hhhhhhhhhh..........eeee.........eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhh......eee.hhh.hhhhhhhhhhhh.......hhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhh....eeeeee...hhhhhhh.eeee....hhhhhhhhhhhhhhhh...hhhhhhhheeeeee...........hhhhhh........eee.hhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhh....eeeeehhhhhh..hhhhhhhhhhhhhhhhh.......eeee.........hhhhhh.............hhhhhhhhhhhhh............hhhhhhhhhhh....eeeee..hhhhhh.....hhhhhhhh...eeeeee...hhhhhh..eeee..hhhhh.eeee....eeeee...........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhh........hhhhh.....hhhhhhhh.hhhhhhhhhhhhhhh.......hhhhhh....ee....................................eeeee...............eeeeee..........hhhhhhhhhh.....eee.hhhhhhh.......eeeeee..eeeeeeee..........eeeee......hhhhh................eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --4FE4S_MOW_BIS_MGD  PDB: A:3-59 UniProt: 39-95            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -------MOLYBDOPTERIN_PROK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nya A   1 EAIKWDKAPCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAAQLVNKLTLDATDPLSKETDFKKCAVKLEK 791
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790

Chain F from PDB  Type:PROTEIN  Length:791
 aligned with NAPA_ECOLI | P33937 from UniProtKB/Swiss-Prot  Length:828

    Alignment length:791
                                    46        56        66        76        86        96       106       116       126       136       146       156       166       176       186       196       206       216       226       236       246       256       266       276       286       296       306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556       566       576       586       596       606       616       626       636       646       656       666       676       686       696       706       716       726       736       746       756       766       776       786       796       806       816       826 
           NAPA_ECOLI    37 EAIKWDKAPCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAAQLVNKLTLDATDPLSKETDFKKCAVKLEK 827
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -----------------------------------------------------------2nyaF02 F:60-138,F:376-491,F:516-587  [code=3.40.50.740, no name defined]      2nyaF03 F:139-375,F:631-667 Dimethylsulfoxide Reductase, domain 2                                                                                                                                                                            2nyaF02 F:60-138,F:376-491,F:516-587  [code=3.40.50.740, no name defined]                                           ------------------------2nyaF02 F:60-138,F:376-491,F:516-587                                    -------------------------------------------2nyaF03 F:139-375,F:631-667          2nyaF04 F:668-791  [code=2.40.40.20, no name defined]                                                                        CATH domains
           Pfam domains (1) --Molybdop_Fe4S4-2nyaF03 F:3-57                          --Molybdopterin-2nyaF05 F:60-532                                                                                                                                                                                                                                                                                                                                                                                                                                                           -------------------------------------------------------------------------------------------------------------------------------------------------Molydop_binding-2nyaF01 F:678-786                                                                            ----- Pfam domains (1)
           Pfam domains (2) --Molybdop_Fe4S4-2nyaF04 F:3-57                          --Molybdopterin-2nyaF06 F:60-532                                                                                                                                                                                                                                                                                                                                                                                                                                                           -------------------------------------------------------------------------------------------------------------------------------------------------Molydop_binding-2nyaF02 F:678-786                                                                            ----- Pfam domains (2)
         Sec.struct. author ...eeeeee........eeeeeee..eeeeeee...........hhhhhhhhhh..........eeee.........eeee.hhhhhhhhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhh.....eee.hhhhhhhhhhhhhhhhh......hhhhhhhh.eeeee..hhhhhhhhhhhhhhhhhhh....eeeeee.....hhhhh.eeee....hhhhhhhhhhhhhhhh...hhhhhh..eeeeee...........hhhhhh........eee.hhhhhhhhhhh.hhhhhhhhhh.hhhhhhhhhhhhhh....eeeeehhhhhh..hhhhhhhhhhhhhhhhh.......eeee.........hhhhhh.............hhhhhhhhhhhhh............hhhhhhhhhhh....eeeee..hhhhhh.....hhhhhhh....eeeeee...hhhhhh..eeeeeehhhhh.eeee....eeeee..........eehhhhhhhhhhhhhhhhh.hhhhhhhhhhhh..hhhhhhh........hhhhh.....hhhhhhhh.hhhhhhhhhhhh..........hhhhhh....ee....................................eeeee...............eeeeee..........hhhhhhhhhh......ee.hhhhhhh.......eeeee....eeeeeee..........eeeee......hhhhh................eeeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                PROSITE (1) --4FE4S_MOW_BIS_MGD  PDB: F:3-59 UniProt: 39-95            ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE (1)
                PROSITE (2) -------MOLYBDOPTERIN_PROK---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE (2)
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nya F   1 EAIKWDKAPCRFCGTGCGVLVGTQQGRVVACQGDPDAPVNRGLNCIKGYFLPKIMYGKDRLTQPLLRMKNGKYDKEGEFTPITWDQAFDVMEEKFKTALKEKGPESIGMFGSGQWTIWEGYAASKLFKAGFRSNNIDPNARHCMASAVVGFMRTFGMDEPMGCYDDIEQADAFVLWGANMAEMHPILWSRITNRRLSNQNVTVAVLSTYQHRSFELADNGIIFTPQSDLVILNYIANYIIQNNAINQDFFSKHVNLRKGATDIGYGLRPTHPLEKAAKNPGSDASEPMSFEDYKAFVAEYTLEKTAEMTGVPKDQLEQLAQLYADPNKKVISYWTMGFNQHTRGVWANNLVYNLHLLTGKISQPGCGPFSLTGQPSACGTAREVGTFAHRLPADMVVTNEKHRDICEKKWNIPSGTIPAKIGLHAVAQDRALKDGKLNVYWTMCTNNMQAGPNINEERMPGWRDPRNFIIVSDPYPTVSALAADLILPTAMWVEKEGAYGNAERRTQFWRQQVQAPGEAKSDLWQLVQFSRRFKTEEVWPEDLLAKKPELRGKTLYEVLYATPEVSKFPVSELAEDQLNDESRELGFYLQKGLFEEYAWFGRGHGHDLAPFDDYHKARGLRWPVVNGKETQWRYSEGNDPYVKAGEGYKFYGKPDGKAVIFALPFEPAAEAPDEEYDLWLSTGRVLEHWHTGSMTRRVPELHRAFPEAVLFIHPLDAKARDLRRGDKVKVVSRRGEVISIVETRGRNRPPQGLVYMPFFDAAQLVNKLTLDATDPLSKETDFKKCAVKLEK 791
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560       570       580       590       600       610       620       630       640       650       660       670       680       690       700       710       720       730       740       750       760       770       780       790

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 2NYA)

Asymmetric Unit(hide GO term definitions)

Chain A,F (NAPA_ECOLI | P33937)

molecular function
	GO:0051539	4 iron, 4 sulfur cluster binding	Interacting selectively and non-covalently with a 4 iron, 4 sulfur (4Fe-4S) cluster; this cluster consists of four iron atoms, with the inorganic sulfur atoms found between the irons and acting as bridging ligands.
	GO:0009055	electron carrier activity	Any molecular entity that serves as an electron acceptor and electron donor in an electron transport chain. An electron transport chain is a process in which a series of electron carriers operate together to transfer electrons from donors to any of several different terminal electron acceptors to generate a transmembrane electrochemical gradient.
	GO:0005506	iron ion binding	Interacting selectively and non-covalently with iron (Fe) ions.
	GO:0051536	iron-sulfur cluster binding	Interacting selectively and non-covalently with an iron-sulfur cluster, a combination of iron and sulfur atoms.
	GO:0046872	metal ion binding	Interacting selectively and non-covalently with any metal ion.
	GO:0030151	molybdenum ion binding	Interacting selectively and non-covalently with molybdenum (Mo) ions.
	GO:0008940	nitrate reductase activity	Catalysis of the reaction: nitrite + acceptor = nitrate + reduced acceptor.
	GO:0016491	oxidoreductase activity	Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
	GO:0005515	protein binding	Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
biological process
	GO:0006777	Mo-molybdopterin cofactor biosynthetic process	The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
	GO:0009061	anaerobic respiration	The enzymatic release of energy from inorganic and organic compounds (especially carbohydrates and fats) which uses compounds other than oxygen (e.g. nitrate, sulfate) as the terminal electron acceptor.
	GO:0042128	nitrate assimilation	The nitrogen metabolic process that encompasses the uptake of nitrate from the environment and reduction to ammonia, and results in the incorporation of nitrogen derived from nitrate into cellular substances.
	GO:0055114	oxidation-reduction process	A metabolic process that results in the removal or addition of one or more electrons to or from a substance, with or without the concomitant removal or addition of a proton or protons.
cellular component
	GO:0030288	outer membrane-bounded periplasmic space	The region between the inner (cytoplasmic or plasma) membrane and outer membrane of organisms with two membranes such as Gram negative bacteria. These periplasmic spaces are relatively thick and contain a thin peptidoglycan layer (PGL), also referred to as a thin cell wall.
	GO:0042597	periplasmic space	The region between the inner (cytoplasmic) and outer membrane (Gram-negative Bacteria) or cytoplasmic membrane and cell wall (Fungi and Gram-positive Bacteria).

Asymmetric Unit
	Complete Structure
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	NAPA_ECOLI \| P33937	:	2pq4

1ogy	CRYSTAL STRUCTURE OF THE HETERODIMERIC NITRATE REDUCTASE FROM RHODOBACTER SPHAEROIDES
2nap	DISSIMILATORY NITRATE REDUCTASE (NAP) FROM DESULFOVIBRIO DESULFURICANS

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (3, 8)

Sites (8, 8)

SS Bonds (0, 0)

Cis Peptide Bonds (2, 2)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (2, 4)

Exons (0, 0)

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Related Entries

Entries Sharing at Least One Protein Chain (UniProt ID)

Related Entries Specified in the PDB File