2NYA - Sequence, Chains, Asymmetric and Biological Units

• Title: CRYSTAL STRUCTURE OF THE PERIPLASMIC NITRATE REDUCTASE (NAP) FROM ESCHERICHIA COLI
• Keywords: MOLYBDENUM, NITRATE REDUCTASE, OXIDOREDUCTASE
• Experiment: X-ray diffraction
• Number of Models: 1

Database	ID code	Status	Coordinate files
			Header	Asymmetric unit	Biological unit
PDB	2NYA	released	available	available	Quaternary Structure Server

Asymmetric unit from PDB

Unit	Type	Name	Chain ID	Residues	Atoms	Hetatoms
1	Protein	PERIPLASMIC NITRATE REDUCTASE	A	791	6301	0
2	Protein	PERIPLASMIC NITRATE REDUCTASE	F	791	6301	0
3	Ligand	PERIPLASMIC NITRATE REDUCTASE	A	4	0	103
4	Ligand	PERIPLASMIC NITRATE REDUCTASE	F	4	0	103
5	Water			925	0	925
total				2515	12602	1131

Proteins

Unit 1

GLU 1 ALA 2 ILE 3 LYS 4 TRP 5 ASP 6 LYS 7 ALA 8 PRO 9 CYS 10 ARG 11 PHE 12 CYS 13 GLY 14 THR 15 GLY 16 CYS 17 GLY 18 VAL 19 LEU 20 VAL 21 GLY 22 THR 23 GLN 24 GLN 25 GLY 26 ARG 27 VAL 28 VAL 29 ALA 30 CYS 31 GLN 32 GLY 33 ASP 34 PRO 35 ASP 36 ALA 37 PRO 38 VAL 39 ASN 40 ARG 41 GLY 42 LEU 43 ASN 44 CYS 45 ILE 46 LYS 47 GLY 48 TYR 49 PHE 50 LEU 51 PRO 52 LYS 53 ILE 54 MET 55 TYR 56 GLY 57 LYS 58 ASP 59 ARG 60 LEU 61 THR 62 GLN 63 PRO 64 LEU 65 LEU 66 ARG 67 MET 68 LYS 69 ASN 70 GLY 71 LYS 72 TYR 73 ASP 74 LYS 75 GLU 76 GLY 77 GLU 78 PHE 79 THR 80 PRO 81 ILE 82 THR 83 TRP 84 ASP 85 GLN 86 ALA 87 PHE 88 ASP 89 VAL 90 MET 91 GLU 92 GLU 93 LYS 94 PHE 95 LYS 96 THR 97 ALA 98 LEU 99 LYS 100 GLU 101 LYS 102 GLY 103 PRO 104 GLU 105 SER 106 ILE 107 GLY 108 MET 109 PHE 110 GLY 111 SER 112 GLY 113 GLN 114 TRP 115 THR 116 ILE 117 TRP 118 GLU 119 GLY 120 TYR 121 ALA 122 ALA 123 SER 124 LYS 125 LEU 126 PHE 127 LYS 128 ALA 129 GLY 130 PHE 131 ARG 132 SER 133 ASN 134 ASN 135 ILE 136 ASP 137 PRO 138 ASN 139 ALA 140 ARG 141 HIS 142 CYS 143 MET 144 ALA 145 SER 146 ALA 147 VAL 148 VAL 149 GLY 150 PHE 151 MET 152 ARG 153 THR 154 PHE 155 GLY 156 MET 157 ASP 158 GLU 159 PRO 160 MET 161 GLY 162 CYS 163 TYR 164 ASP 165 ASP 166 ILE 167 GLU 168 GLN 169 ALA 170 ASP 171 ALA 172 PHE 173 VAL 174 LEU 175 TRP 176 GLY 177 ALA 178 ASN 179 MET 180 ALA 181 GLU 182 MET 183 HIS 184 PRO 185 ILE 186 LEU 187 TRP 188 SER 189 ARG 190 ILE 191 THR 192 ASN 193 ARG 194 ARG 195 LEU 196 SER 197 ASN 198 GLN 199 ASN 200 VAL 201 THR 202 VAL 203 ALA 204 VAL 205 LEU 206 SER 207 THR 208 TYR 209 GLN 210 HIS 211 ARG 212 SER 213 PHE 214 GLU 215 LEU 216 ALA 217 ASP 218 ASN 219 GLY 220 ILE 221 ILE 222 PHE 223 THR 224 PRO 225 GLN 226 SER 227 ASP 228 LEU 229 VAL 230 ILE 231 LEU 232 ASN 233 TYR 234 ILE 235 ALA 236 ASN 237 TYR 238 ILE 239 ILE 240 GLN 241 ASN 242 ASN 243 ALA 244 ILE 245 ASN 246 GLN 247 ASP 248 PHE 249 PHE 250 SER 251 LYS 252 HIS 253 VAL 254 ASN 255 LEU 256 ARG 257 LYS 258 GLY 259 ALA 260 THR 261 ASP 262 ILE 263 GLY 264 TYR 265 GLY 266 LEU 267 ARG 268 PRO 269 THR 270 HIS 271 PRO 272 LEU 273 GLU 274 LYS 275 ALA 276 ALA 277 LYS 278 ASN 279 PRO 280 GLY 281 SER 282 ASP 283 ALA 284 SER 285 GLU 286 PRO 287 MET 288 SER 289 PHE 290 GLU 291 ASP 292 TYR 293 LYS 294 ALA 295 PHE 296 VAL 297 ALA 298 GLU 299 TYR 300 THR 301 LEU 302 GLU 303 LYS 304 THR 305 ALA 306 GLU 307 MET 308 THR 309 GLY 310 VAL 311 PRO 312 LYS 313 ASP 314 GLN 315 LEU 316 GLU 317 GLN 318 LEU 319 ALA 320 GLN 321 LEU 322 TYR 323 ALA 324 ASP 325 PRO 326 ASN 327 LYS 328 LYS 329 VAL 330 ILE 331 SER 332 TYR 333 TRP 334 THR 335 MET 336 GLY 337 PHE 338 ASN 339 GLN 340 HIS 341 THR 342 ARG 343 GLY 344 VAL 345 TRP 346 ALA 347 ASN 348 ASN 349 LEU 350 VAL 351 TYR 352 ASN 353 LEU 354 HIS 355 LEU 356 LEU 357 THR 358 GLY 359 LYS 360 ILE 361 SER 362 GLN 363 PRO 364 GLY 365 CYS 366 GLY 367 PRO 368 PHE 369 SER 370 LEU 371 THR 372 GLY 373 GLN 374 PRO 375 SER 376 ALA 377 CYS 378 GLY 379 THR 380 ALA 381 ARG 382 GLU 383 VAL 384 GLY 385 THR 386 PHE 387 ALA 388 HIS 389 ARG 390 LEU 391 PRO 392 ALA 393 ASP 394 MET 395 VAL 396 VAL 397 THR 398 ASN 399 GLU 400 LYS 401 HIS 402 ARG 403 ASP 404 ILE 405 CYS 406 GLU 407 LYS 408 LYS 409 TRP 410 ASN 411 ILE 412 PRO 413 SER 414 GLY 415 THR 416 ILE 417 PRO 418 ALA 419 LYS 420 ILE 421 GLY 422 LEU 423 HIS 424 ALA 425 VAL 426 ALA 427 GLN 428 ASP 429 ARG 430 ALA 431 LEU 432 LYS 433 ASP 434 GLY 435 LYS 436 LEU 437 ASN 438 VAL 439 TYR 440 TRP 441 THR 442 MET 443 CYS 444 THR 445 ASN 446 ASN 447 MET 448 GLN 449 ALA 450 GLY 451 PRO 452 ASN 453 ILE 454 ASN 455 GLU 456 GLU 457 ARG 458 MET 459 PRO 460 GLY 461 TRP 462 ARG 463 ASP 464 PRO 465 ARG 466 ASN 467 PHE 468 ILE 469 ILE 470 VAL 471 SER 472 ASP 473 PRO 474 TYR 475 PRO 476 THR 477 VAL 478 SER 479 ALA 480 LEU 481 ALA 482 ALA 483 ASP 484 LEU 485 ILE 486 LEU 487 PRO 488 THR 489 ALA 490 MET 491 TRP 492 VAL 493 GLU 494 LYS 495 GLU 496 GLY 497 ALA 498 TYR 499 GLY 500 ASN 501 ALA 502 GLU 503 ARG 504 ARG 505 THR 506 GLN 507 PHE 508 TRP 509 ARG 510 GLN 511 GLN 512 VAL 513 GLN 514 ALA 515 PRO 516 GLY 517 GLU 518 ALA 519 LYS 520 SER 521 ASP 522 LEU 523 TRP 524 GLN 525 LEU 526 VAL 527 GLN 528 PHE 529 SER 530 ARG 531 ARG 532 PHE 533 LYS 534 THR 535 GLU 536 GLU 537 VAL 538 TRP 539 PRO 540 GLU 541 ASP 542 LEU 543 LEU 544 ALA 545 LYS 546 LYS 547 PRO 548 GLU 549 LEU 550 ARG 551 GLY 552 LYS 553 THR 554 LEU 555 TYR 556 GLU 557 VAL 558 LEU 559 TYR 560 ALA 561 THR 562 PRO 563 GLU 564 VAL 565 SER 566 LYS 567 PHE 568 PRO 569 VAL 570 SER 571 GLU 572 LEU 573 ALA 574 GLU 575 ASP 576 GLN 577 LEU 578 ASN 579 ASP 580 GLU 581 SER 582 ARG 583 GLU 584 LEU 585 GLY 586 PHE 587 TYR 588 LEU 589 GLN 590 LYS 591 GLY 592 LEU 593 PHE 594 GLU 595 GLU 596 TYR 597 ALA 598 TRP 599 PHE 600 GLY 601 ARG 602 GLY 603 HIS 604 GLY 605 HIS 606 ASP 607 LEU 608 ALA 609 PRO 610 PHE 611 ASP 612 ASP 613 TYR 614 HIS 615 LYS 616 ALA 617 ARG 618 GLY 619 LEU 620 ARG 621 TRP 622 PRO 623 VAL 624 VAL 625 ASN 626 GLY 627 LYS 628 GLU 629 THR 630 GLN 631 TRP 632 ARG 633 TYR 634 SER 635 GLU 636 GLY 637 ASN 638 ASP 639 PRO 640 TYR 641 VAL 642 LYS 643 ALA 644 GLY 645 GLU 646 GLY 647 TYR 648 LYS 649 PHE 650 TYR 651 GLY 652 LYS 653 PRO 654 ASP 655 GLY 656 LYS 657 ALA 658 VAL 659 ILE 660 PHE 661 ALA 662 LEU 663 PRO 664 PHE 665 GLU 666 PRO 667 ALA 668 ALA 669 GLU 670 ALA 671 PRO 672 ASP 673 GLU 674 GLU 675 TYR 676 ASP 677 LEU 678 TRP 679 LEU 680 SER 681 THR 682 GLY 683 ARG 684 VAL 685 LEU 686 GLU 687 HIS 688 TRP 689 HIS 690 THR 691 GLY 692 SER 693 MET 694 THR 695 ARG 696 ARG 697 VAL 698 PRO 699 GLU 700 LEU 701 HIS 702 ARG 703 ALA 704 PHE 705 PRO 706 GLU 707 ALA 708 VAL 709 LEU 710 PHE 711 ILE 712 HIS 713 PRO 714 LEU 715 ASP 716 ALA 717 LYS 718 ALA 719 ARG 720 ASP 721 LEU 722 ARG 723 ARG 724 GLY 725 ASP 726 LYS 727 VAL 728 LYS 729 VAL 730 VAL 731 SER 732 ARG 733 ARG 734 GLY 735 GLU 736 VAL 737 ILE 738 SER 739 ILE 740 VAL 741 GLU 742 THR 743 ARG 744 GLY 745 ARG 746 ASN 747 ARG 748 PRO 749 PRO 750 GLN 751 GLY 752 LEU 753 VAL 754 TYR 755 MET 756 PRO 757 PHE 758 PHE 759 ASP 760 ALA 761 ALA 762 GLN 763 LEU 764 VAL 765 ASN 766 LYS 767 LEU 768 THR 769 LEU 770 ASP 771 ALA 772 THR 773 ASP 774 PRO 775 LEU 776 SER 777 LYS 778 GLU 779 THR 780 ASP 781 PHE 782 LYS 783 LYS 784 CYS 785 ALA 786 VAL 787 LYS 788 LEU 789 GLU 790 LYS 791

Unit 2

GLU 1 ALA 2 ILE 3 LYS 4 TRP 5 ASP 6 LYS 7 ALA 8 PRO 9 CYS 10 ARG 11 PHE 12 CYS 13 GLY 14 THR 15 GLY 16 CYS 17 GLY 18 VAL 19 LEU 20 VAL 21 GLY 22 THR 23 GLN 24 GLN 25 GLY 26 ARG 27 VAL 28 VAL 29 ALA 30 CYS 31 GLN 32 GLY 33 ASP 34 PRO 35 ASP 36 ALA 37 PRO 38 VAL 39 ASN 40 ARG 41 GLY 42 LEU 43 ASN 44 CYS 45 ILE 46 LYS 47 GLY 48 TYR 49 PHE 50 LEU 51 PRO 52 LYS 53 ILE 54 MET 55 TYR 56 GLY 57 LYS 58 ASP 59 ARG 60 LEU 61 THR 62 GLN 63 PRO 64 LEU 65 LEU 66 ARG 67 MET 68 LYS 69 ASN 70 GLY 71 LYS 72 TYR 73 ASP 74 LYS 75 GLU 76 GLY 77 GLU 78 PHE 79 THR 80 PRO 81 ILE 82 THR 83 TRP 84 ASP 85 GLN 86 ALA 87 PHE 88 ASP 89 VAL 90 MET 91 GLU 92 GLU 93 LYS 94 PHE 95 LYS 96 THR 97 ALA 98 LEU 99 LYS 100 GLU 101 LYS 102 GLY 103 PRO 104 GLU 105 SER 106 ILE 107 GLY 108 MET 109 PHE 110 GLY 111 SER 112 GLY 113 GLN 114 TRP 115 THR 116 ILE 117 TRP 118 GLU 119 GLY 120 TYR 121 ALA 122 ALA 123 SER 124 LYS 125 LEU 126 PHE 127 LYS 128 ALA 129 GLY 130 PHE 131 ARG 132 SER 133 ASN 134 ASN 135 ILE 136 ASP 137 PRO 138 ASN 139 ALA 140 ARG 141 HIS 142 CYS 143 MET 144 ALA 145 SER 146 ALA 147 VAL 148 VAL 149 GLY 150 PHE 151 MET 152 ARG 153 THR 154 PHE 155 GLY 156 MET 157 ASP 158 GLU 159 PRO 160 MET 161 GLY 162 CYS 163 TYR 164 ASP 165 ASP 166 ILE 167 GLU 168 GLN 169 ALA 170 ASP 171 ALA 172 PHE 173 VAL 174 LEU 175 TRP 176 GLY 177 ALA 178 ASN 179 MET 180 ALA 181 GLU 182 MET 183 HIS 184 PRO 185 ILE 186 LEU 187 TRP 188 SER 189 ARG 190 ILE 191 THR 192 ASN 193 ARG 194 ARG 195 LEU 196 SER 197 ASN 198 GLN 199 ASN 200 VAL 201 THR 202 VAL 203 ALA 204 VAL 205 LEU 206 SER 207 THR 208 TYR 209 GLN 210 HIS 211 ARG 212 SER 213 PHE 214 GLU 215 LEU 216 ALA 217 ASP 218 ASN 219 GLY 220 ILE 221 ILE 222 PHE 223 THR 224 PRO 225 GLN 226 SER 227 ASP 228 LEU 229 VAL 230 ILE 231 LEU 232 ASN 233 TYR 234 ILE 235 ALA 236 ASN 237 TYR 238 ILE 239 ILE 240 GLN 241 ASN 242 ASN 243 ALA 244 ILE 245 ASN 246 GLN 247 ASP 248 PHE 249 PHE 250 SER 251 LYS 252 HIS 253 VAL 254 ASN 255 LEU 256 ARG 257 LYS 258 GLY 259 ALA 260 THR 261 ASP 262 ILE 263 GLY 264 TYR 265 GLY 266 LEU 267 ARG 268 PRO 269 THR 270 HIS 271 PRO 272 LEU 273 GLU 274 LYS 275 ALA 276 ALA 277 LYS 278 ASN 279 PRO 280 GLY 281 SER 282 ASP 283 ALA 284 SER 285 GLU 286 PRO 287 MET 288 SER 289 PHE 290 GLU 291 ASP 292 TYR 293 LYS 294 ALA 295 PHE 296 VAL 297 ALA 298 GLU 299 TYR 300 THR 301 LEU 302 GLU 303 LYS 304 THR 305 ALA 306 GLU 307 MET 308 THR 309 GLY 310 VAL 311 PRO 312 LYS 313 ASP 314 GLN 315 LEU 316 GLU 317 GLN 318 LEU 319 ALA 320 GLN 321 LEU 322 TYR 323 ALA 324 ASP 325 PRO 326 ASN 327 LYS 328 LYS 329 VAL 330 ILE 331 SER 332 TYR 333 TRP 334 THR 335 MET 336 GLY 337 PHE 338 ASN 339 GLN 340 HIS 341 THR 342 ARG 343 GLY 344 VAL 345 TRP 346 ALA 347 ASN 348 ASN 349 LEU 350 VAL 351 TYR 352 ASN 353 LEU 354 HIS 355 LEU 356 LEU 357 THR 358 GLY 359 LYS 360 ILE 361 SER 362 GLN 363 PRO 364 GLY 365 CYS 366 GLY 367 PRO 368 PHE 369 SER 370 LEU 371 THR 372 GLY 373 GLN 374 PRO 375 SER 376 ALA 377 CYS 378 GLY 379 THR 380 ALA 381 ARG 382 GLU 383 VAL 384 GLY 385 THR 386 PHE 387 ALA 388 HIS 389 ARG 390 LEU 391 PRO 392 ALA 393 ASP 394 MET 395 VAL 396 VAL 397 THR 398 ASN 399 GLU 400 LYS 401 HIS 402 ARG 403 ASP 404 ILE 405 CYS 406 GLU 407 LYS 408 LYS 409 TRP 410 ASN 411 ILE 412 PRO 413 SER 414 GLY 415 THR 416 ILE 417 PRO 418 ALA 419 LYS 420 ILE 421 GLY 422 LEU 423 HIS 424 ALA 425 VAL 426 ALA 427 GLN 428 ASP 429 ARG 430 ALA 431 LEU 432 LYS 433 ASP 434 GLY 435 LYS 436 LEU 437 ASN 438 VAL 439 TYR 440 TRP 441 THR 442 MET 443 CYS 444 THR 445 ASN 446 ASN 447 MET 448 GLN 449 ALA 450 GLY 451 PRO 452 ASN 453 ILE 454 ASN 455 GLU 456 GLU 457 ARG 458 MET 459 PRO 460 GLY 461 TRP 462 ARG 463 ASP 464 PRO 465 ARG 466 ASN 467 PHE 468 ILE 469 ILE 470 VAL 471 SER 472 ASP 473 PRO 474 TYR 475 PRO 476 THR 477 VAL 478 SER 479 ALA 480 LEU 481 ALA 482 ALA 483 ASP 484 LEU 485 ILE 486 LEU 487 PRO 488 THR 489 ALA 490 MET 491 TRP 492 VAL 493 GLU 494 LYS 495 GLU 496 GLY 497 ALA 498 TYR 499 GLY 500 ASN 501 ALA 502 GLU 503 ARG 504 ARG 505 THR 506 GLN 507 PHE 508 TRP 509 ARG 510 GLN 511 GLN 512 VAL 513 GLN 514 ALA 515 PRO 516 GLY 517 GLU 518 ALA 519 LYS 520 SER 521 ASP 522 LEU 523 TRP 524 GLN 525 LEU 526 VAL 527 GLN 528 PHE 529 SER 530 ARG 531 ARG 532 PHE 533 LYS 534 THR 535 GLU 536 GLU 537 VAL 538 TRP 539 PRO 540 GLU 541 ASP 542 LEU 543 LEU 544 ALA 545 LYS 546 LYS 547 PRO 548 GLU 549 LEU 550 ARG 551 GLY 552 LYS 553 THR 554 LEU 555 TYR 556 GLU 557 VAL 558 LEU 559 TYR 560 ALA 561 THR 562 PRO 563 GLU 564 VAL 565 SER 566 LYS 567 PHE 568 PRO 569 VAL 570 SER 571 GLU 572 LEU 573 ALA 574 GLU 575 ASP 576 GLN 577 LEU 578 ASN 579 ASP 580 GLU 581 SER 582 ARG 583 GLU 584 LEU 585 GLY 586 PHE 587 TYR 588 LEU 589 GLN 590 LYS 591 GLY 592 LEU 593 PHE 594 GLU 595 GLU 596 TYR 597 ALA 598 TRP 599 PHE 600 GLY 601 ARG 602 GLY 603 HIS 604 GLY 605 HIS 606 ASP 607 LEU 608 ALA 609 PRO 610 PHE 611 ASP 612 ASP 613 TYR 614 HIS 615 LYS 616 ALA 617 ARG 618 GLY 619 LEU 620 ARG 621 TRP 622 PRO 623 VAL 624 VAL 625 ASN 626 GLY 627 LYS 628 GLU 629 THR 630 GLN 631 TRP 632 ARG 633 TYR 634 SER 635 GLU 636 GLY 637 ASN 638 ASP 639 PRO 640 TYR 641 VAL 642 LYS 643 ALA 644 GLY 645 GLU 646 GLY 647 TYR 648 LYS 649 PHE 650 TYR 651 GLY 652 LYS 653 PRO 654 ASP 655 GLY 656 LYS 657 ALA 658 VAL 659 ILE 660 PHE 661 ALA 662 LEU 663 PRO 664 PHE 665 GLU 666 PRO 667 ALA 668 ALA 669 GLU 670 ALA 671 PRO 672 ASP 673 GLU 674 GLU 675 TYR 676 ASP 677 LEU 678 TRP 679 LEU 680 SER 681 THR 682 GLY 683 ARG 684 VAL 685 LEU 686 GLU 687 HIS 688 TRP 689 HIS 690 THR 691 GLY 692 SER 693 MET 694 THR 695 ARG 696 ARG 697 VAL 698 PRO 699 GLU 700 LEU 701 HIS 702 ARG 703 ALA 704 PHE 705 PRO 706 GLU 707 ALA 708 VAL 709 LEU 710 PHE 711 ILE 712 HIS 713 PRO 714 LEU 715 ASP 716 ALA 717 LYS 718 ALA 719 ARG 720 ASP 721 LEU 722 ARG 723 ARG 724 GLY 725 ASP 726 LYS 727 VAL 728 LYS 729 VAL 730 VAL 731 SER 732 ARG 733 ARG 734 GLY 735 GLU 736 VAL 737 ILE 738 SER 739 ILE 740 VAL 741 GLU 742 THR 743 ARG 744 GLY 745 ARG 746 ASN 747 ARG 748 PRO 749 PRO 750 GLN 751 GLY 752 LEU 753 VAL 754 TYR 755 MET 756 PRO 757 PHE 758 PHE 759 ASP 760 ALA 761 ALA 762 GLN 763 LEU 764 VAL 765 ASN 766 LYS 767 LEU 768 THR 769 LEU 770 ASP 771 ALA 772 THR 773 ASP 774 PRO 775 LEU 776 SER 777 LYS 778 GLU 779 THR 780 ASP 781 PHE 782 LYS 783 LYS 784 CYS 785 ALA 786 VAL 787 LYS 788 LEU 789 GLU 790 LYS 791

Ligands

Unit 3	SF4 2001 6MO 2002 MGD 3001 MGD 4001
Unit 4	SF4 5001 6MO 5002 MGD 6001 MGD 7001