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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PUTATIVE ACETYL-COA HYDROLASE/TRANSFERASE PG1013 FROM PORPHYROMONAS GINGIVALIS, NORTHEAST STRUCTURAL GENOMICS TARGET PGR16.
 
Authors :  F. Forouhar, H. Neely, J. Seetharaman, W. Yong, C. K. Ho, Y. Fang, K. Cunn L. -C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Monteli J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (N
Date :  13 Nov 06  (Deposition) - 30 Jan 07  (Release) - 13 Jul 11  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Alpha Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  F. Forouhar, H. Neely, J. Seetharaman, W. Yong, C. K. Ho, Y. Fang, K. Cunningham, L. -C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Putative Acetyl-Coa Hydrolase/Transferase Pg1013 From Porphyromonas Gingivalis, Northeast Structural Genomics Target Pgr16
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETYL-COA HYDROLASE/TRANSFERASE FAMILY PROTEIN
    Chains: A, B, C, D, E, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET21
    Expression System Strain: BL21(DE3)+MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PG1013
    Organism Scientific: PORPHYROMONAS GINGIVALIS
    Organism Taxid: 242619
    Strain: W83

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 78)

Asymmetric Unit (2, 78)
No.NameCountTypeFull Name
1MSE72Mod. Amino AcidSELENOMETHIONINE
2ZN6Ligand/IonZINC ION
Biological Unit 1 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION
Biological Unit 2 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION
Biological Unit 3 (1, 24)
No.NameCountTypeFull Name
1MSE24Mod. Amino AcidSELENOMETHIONINE
2ZN-1Ligand/IonZINC ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:411 , ASP A:413 , HOH A:532 , HOH A:533 , GLU B:416 , HIS B:417BINDING SITE FOR RESIDUE ZN B 507
2AC2SOFTWAREGLU A:416 , HIS A:417 , HIS B:411 , ASP B:413 , HOH B:526BINDING SITE FOR RESIDUE ZN A 507
3AC3SOFTWARETHR C:365 , HIS C:411 , ASP C:413 , HOH C:530 , HOH C:531 , GLU D:416 , HIS D:417BINDING SITE FOR RESIDUE ZN C 507
4AC4SOFTWAREGLU C:416 , HIS C:417 , HOH C:508 , THR D:365 , HIS D:411 , ASP D:413BINDING SITE FOR RESIDUE ZN D 507
5AC5SOFTWARETHR E:365 , HIS E:411 , ASP E:413 , HOH E:544 , HOH E:545 , GLU F:416 , HIS F:417BINDING SITE FOR RESIDUE ZN E 507
6AC6SOFTWAREGLU E:416 , HIS E:417 , HIS F:411 , ASP F:413 , HOH F:541 , HOH F:542BINDING SITE FOR RESIDUE ZN E 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2NVV)

(-) Cis Peptide Bonds  (12, 12)

Asymmetric Unit
No.Residues
1Thr A:81 -Pro A:82
2Pro A:179 -Pro A:180
3Thr B:81 -Pro B:82
4Pro B:179 -Pro B:180
5Thr C:81 -Pro C:82
6Pro C:179 -Pro C:180
7Thr D:81 -Pro D:82
8Pro D:179 -Pro D:180
9Thr E:81 -Pro E:82
10Pro E:179 -Pro E:180
11Thr F:81 -Pro F:82
12Pro F:179 -Pro F:180

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2NVV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2NVV)

(-) Exons   (0, 0)

(no "Exon" information available for 2NVV)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:496
 aligned with Q7MVN7_PORGI | Q7MVN7 from UniProtKB/TrEMBL  Length:498

    Alignment length:496
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491      
         Q7MVN7_PORGI     2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEIMGMHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRMMNGIGGSGDFTRNSYVSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDMRNVRWEDYM 497
               SCOP domains d2nvva1 A:2-218 automated matches                                                                                                                                                                                        d2nvva2 A:219-497 automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh......eeee..........hhhhhhhhhhhhhhh......eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhh.......eeeeee.ee....eee......hhhhhhhhh.eeeeeee...hhhhh..............................ee.hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhhhhh.....eeee..eehhhhhhhhhh..eeeeee.ee..hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh..eeee...eehhhhee.ee..............eeee..eeee....hhhhhhhhhhhhh.hhhhhhhhhhhh...............hhhhhhhhhh.hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nvv A   2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGmFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEImGmHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEmKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNmYTEVIQDAVIALmKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRmmNGIGGSGDFTRNSYVSIFTTPSVmKDGKISSFVPmVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDmRNVRWEDYm 497
                                    11        21        31        41        51     |  61        71        81        91       101       111       121       131       141       151       161      |171       181       191       201       211       221       231       241 |     251       261       271       281       291  |    301       311       321       331       341       351       361       371||     381       391     | 401      |411       421       431       441       451       461       471       481      |491     |
                                                                                  57-MSE                                                                                                        168-MSE                                                                    243-MSE                               281-MSE      294-MSE                                                                       372-MSE                  397-MSE    408-MSE                                                                         488-MSE  497-MSE
                                                                                                                                                                                                  170-MSE                                                                                                                                                                                                    373-MSE                                                                                                                        


Chain B from PDB  Type:PROTEIN  Length:496
 aligned with Q7MVN7_PORGI | Q7MVN7 from UniProtKB/TrEMBL  Length:498

    Alignment length:496
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491      
         Q7MVN7_PORGI     2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEIMGMHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRMMNGIGGSGDFTRNSYVSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDMRNVRWEDYM 497
               SCOP domains d2nvvb1 B:2-218 automated matches                                                                                                                                                                                        d2nvvb2 B:219-497 automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh......eeee..........hhhhhhhhhhhhhhh......eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhh.......eeeeeeeee....eeee.....hhhhhhhhh.eeeeeee...hhhhh..............................ee.hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhhhhh.....eeee..eehhhhhhhhhh..eeeeee.ee..hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh..eeee...eehhhhee.ee..............eeee..eeee....hhhhhhhhhhhhh.hhhhhhhhhhhh...............hhhhhhhhhh.hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nvv B   2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGmFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEImGmHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEmKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNmYTEVIQDAVIALmKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRmmNGIGGSGDFTRNSYVSIFTTPSVmKDGKISSFVPmVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDmRNVRWEDYm 497
                                    11        21        31        41        51     |  61        71        81        91       101       111       121       131       141       151       161      |171       181       191       201       211       221       231       241 |     251       261       271       281       291  |    301       311       321       331       341       351       361       371||     381       391     | 401      |411       421       431       441       451       461       471       481      |491     |
                                                                                  57-MSE                                                                                                        168-MSE                                                                    243-MSE                               281-MSE      294-MSE                                                                       372-MSE                  397-MSE    408-MSE                                                                         488-MSE  497-MSE
                                                                                                                                                                                                  170-MSE                                                                                                                                                                                                    373-MSE                                                                                                                        


Chain C from PDB  Type:PROTEIN  Length:496
 aligned with Q7MVN7_PORGI | Q7MVN7 from UniProtKB/TrEMBL  Length:498

    Alignment length:496
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491      
         Q7MVN7_PORGI     2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEIMGMHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRMMNGIGGSGDFTRNSYVSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDMRNVRWEDYM 497
               SCOP domains d2nvvc1 C:2-218 automated matches                                                                                                                                                                                        d2nvvc2 C:219-497 automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh......eeee..........hhhhhhhhhhhhhhh......eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhh.......eeeeee.ee....eee......hhhhhhhhh.eeeeeee...hhhhh..............................ee.hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhhhhh.....eeee..eehhhhhhhhhh..eeeeee.ee..hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh..eeee...eehhhhee.ee..............eeee..eeee....hhhhhhhhhhhhh.hhhhhhhhhhhh...............hhhhhhhhhh.hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nvv C   2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGmFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEImGmHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEmKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNmYTEVIQDAVIALmKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRmmNGIGGSGDFTRNSYVSIFTTPSVmKDGKISSFVPmVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDmRNVRWEDYm 497
                                    11        21        31        41        51     |  61        71        81        91       101       111       121       131       141       151       161      |171       181       191       201       211       221       231       241 |     251       261       271       281       291  |    301       311       321       331       341       351       361       371||     381       391     | 401      |411       421       431       441       451       461       471       481      |491     |
                                                                                  57-MSE                                                                                                        168-MSE                                                                    243-MSE                               281-MSE      294-MSE                                                                       372-MSE                  397-MSE    408-MSE                                                                         488-MSE  497-MSE
                                                                                                                                                                                                  170-MSE                                                                                                                                                                                                    373-MSE                                                                                                                        


Chain D from PDB  Type:PROTEIN  Length:496
 aligned with Q7MVN7_PORGI | Q7MVN7 from UniProtKB/TrEMBL  Length:498

    Alignment length:496
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491      
         Q7MVN7_PORGI     2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEIMGMHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRMMNGIGGSGDFTRNSYVSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDMRNVRWEDYM 497
               SCOP domains d2nvvd1 D:2-218 automated matches                                                                                                                                                                                        d2nvvd2 D:219-497 automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh......eeee..........hhhhhhhhhhhhhhh......eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhh.......eeeeee.ee....eee......hhhhhhhhh.eeeeeee...hhhhh..............................ee.hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhhhhh.....eeee..eehhhhhhhhhh..eeeeee.ee..hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh..eeee...eehhhhee.ee..............eeee..eeee....hhhhhhhhhhhhh.hhhhhhhhhhhh...............hhhhhhhhhh.hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nvv D   2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGmFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEImGmHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEmKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNmYTEVIQDAVIALmKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRmmNGIGGSGDFTRNSYVSIFTTPSVmKDGKISSFVPmVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDmRNVRWEDYm 497
                                    11        21        31        41        51     |  61        71        81        91       101       111       121       131       141       151       161      |171       181       191       201       211       221       231       241 |     251       261       271       281       291  |    301       311       321       331       341       351       361       371||     381       391     | 401      |411       421       431       441       451       461       471       481      |491     |
                                                                                  57-MSE                                                                                                        168-MSE                                                                    243-MSE                               281-MSE      294-MSE                                                                       372-MSE                  397-MSE    408-MSE                                                                         488-MSE  497-MSE
                                                                                                                                                                                                  170-MSE                                                                                                                                                                                                    373-MSE                                                                                                                        


Chain E from PDB  Type:PROTEIN  Length:496
 aligned with Q7MVN7_PORGI | Q7MVN7 from UniProtKB/TrEMBL  Length:498

    Alignment length:496
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491      
         Q7MVN7_PORGI     2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEIMGMHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRMMNGIGGSGDFTRNSYVSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDMRNVRWEDYM 497
               SCOP domains d2nvve1 E:2-218 automated matches                                                                                                                                                                                        d2nvve2 E:219-497 automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhh......eeee..........hhhhhhhhhhhhhhh......eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhh.......eeeeee.ee....eee......hhhhhhhhh.eeeeeee...hhhhh..............................ee.hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhhh........eee..hhhhhhhhhhhhhh.....eeee..eehhhhhhhhhh..eeeeee.ee..hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh..eeee...eehhhhee.ee..............eeee..eeee....hhhhhhhhhhhhh.hhhhhhhhhhhh...............hhhhhhhhhh.hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nvv E   2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGmFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEImGmHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEmKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNmYTEVIQDAVIALmKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRmmNGIGGSGDFTRNSYVSIFTTPSVmKDGKISSFVPmVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDmRNVRWEDYm 497
                                    11        21        31        41        51     |  61        71        81        91       101       111       121       131       141       151       161      |171       181       191       201       211       221       231       241 |     251       261       271       281       291  |    301       311       321       331       341       351       361       371||     381       391     | 401      |411       421       431       441       451       461       471       481      |491     |
                                                                                  57-MSE                                                                                                        168-MSE                                                                    243-MSE                               281-MSE      294-MSE                                                                       372-MSE                  397-MSE    408-MSE                                                                         488-MSE  497-MSE
                                                                                                                                                                                                  170-MSE                                                                                                                                                                                                    373-MSE                                                                                                                        


Chain F from PDB  Type:PROTEIN  Length:496
 aligned with Q7MVN7_PORGI | Q7MVN7 from UniProtKB/TrEMBL  Length:498

    Alignment length:496
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491      
         Q7MVN7_PORGI     2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGMFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEIMGMHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEMKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNMYTEVIQDAVIALMKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRMMNGIGGSGDFTRNSYVSIFTTPSVMKDGKISSFVPMVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDMRNVRWEDYM 497
               SCOP domains d2nvvf1 F:2-218 automated matches                                                                                                                                                                                        d2nvvf2 F:219-497 automated matches                                                                                                                                                                                                                                                     SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
           Pfam domains (1) AcetylCoA_hydro-2nvvF07 F:2-211                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------AcetylCoA_hyd_C-2nvvF01 F:314-460                                                                                                                  ------------------------------------- Pfam domains (1)
           Pfam domains (2) AcetylCoA_hydro-2nvvF08 F:2-211                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------AcetylCoA_hyd_C-2nvvF02 F:314-460                                                                                                                  ------------------------------------- Pfam domains (2)
           Pfam domains (3) AcetylCoA_hydro-2nvvF09 F:2-211                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------AcetylCoA_hyd_C-2nvvF03 F:314-460                                                                                                                  ------------------------------------- Pfam domains (3)
           Pfam domains (4) AcetylCoA_hydro-2nvvF10 F:2-211                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------AcetylCoA_hyd_C-2nvvF04 F:314-460                                                                                                                  ------------------------------------- Pfam domains (4)
           Pfam domains (5) AcetylCoA_hydro-2nvvF11 F:2-211                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------AcetylCoA_hyd_C-2nvvF05 F:314-460                                                                                                                  ------------------------------------- Pfam domains (5)
           Pfam domains (6) AcetylCoA_hydro-2nvvF12 F:2-211                                                                                                                                                                                   ------------------------------------------------------------------------------------------------------AcetylCoA_hyd_C-2nvvF06 F:314-460                                                                                                                  ------------------------------------- Pfam domains (6)
         Sec.struct. author .....hhhhhhh......eeee..........hhhhhhhhhhhhhhh......eeee........hhhhhhhh..eeeee....hhhhhhhhhh...ee...hhhhhhhhhhh.......eeeeee.ee....eee......hhhhhhhhh.eeeeeee...hhhhh..............................ee.hhh.eeeeeee............hhhhhhhhhhhhhhhhhhhhh.........eee..hhhhhhhhhhhhhh.....eeee..eehhhhhhhhhh..eeeeee.ee..hhhhhhhhhhhhhhhh..eee.hhhhhhhhhhhhhhh.eeeee..eee....ee..eehhhee.....hhhhhhhhh..eeee...eehhhhee.ee..............eeee..eeee....hhhhhhhhhhhhh.hhhhhhhhhhhh...............hhhhhhhhhh.hhhhh...... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2nvv F   2 ALRFITAEEAAEFVHHNDNVGFSGFTPAGNPKVVPAAIAKRAIAAHEKGNPFKIGmFTGASTGARLDGVLAQADAVKFRTPYQSNKDLRNLINNGSTSYFDLHLSTLAQDLRYGFYGKVDVAIIEVADVTEDGKILPTTGVGILPTICRLADRIIVELNDKHPKEImGmHDLCEPLDPPARRELPVYTPSDRIGKPYVQVDPAKIVGVVRTSEPNDESDFAPLDPVTQAIGDNVAAFLVSEmKAGRIPKDFLPLQSGVGNVANAVLGALGDNPDIPAFNmYTEVIQDAVIALmKKGRIKFASGCSLSVSRSVIQDIYANLDFFKDKILLRPQEYSNNPEIVRRLGVITINTALEADIFGNINSTHVSGTRmmNGIGGSGDFTRNSYVSIFTTPSVmKDGKISSFVPmVAHHDHSEHSVKVIISEWGVADLRGKNPRERAHEIIDKCVHPDYRPLLRQYLELGVKGQTPQNLDCCFAFHQELAKSGDmRNVRWEDYm 497
                                    11        21        31        41        51     |  61        71        81        91       101       111       121       131       141       151       161      |171       181       191       201       211       221       231       241 |     251       261       271       281       291  |    301       311       321       331       341       351       361       371||     381       391     | 401      |411       421       431       441       451       461       471       481      |491     |
                                                                                  57-MSE                                                                                                        168-MSE                                                                    243-MSE                               281-MSE      294-MSE                                                                       372-MSE                  397-MSE    408-MSE                                                                         488-MSE  497-MSE
                                                                                                                                                                                                  170-MSE                                                                                                                                                                                                    373-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 12)

Asymmetric Unit
(-)
Class: Alpha and beta proteins (a/b) (23833)
(-)
Fold: NagB/RpiA/CoA transferase-like (94)
(-)
Superfamily: NagB/RpiA/CoA transferase-like (94)
(-)
Family: automated matches (19)
(-)
Protein domain: automated matches (19)
(-)
Porphyromonas gingivalis [TaxId: 242619] (1)
1ad2nvva1A:2-218
1bd2nvva2A:219-497
1cd2nvvf1F:2-218
1dd2nvvf2F:219-497
1ed2nvvb1B:2-218
1fd2nvvb2B:219-497
1gd2nvvc1C:2-218
1hd2nvvc2C:219-497
1id2nvvd1D:2-218
1jd2nvvd2D:219-497
1kd2nvve1E:2-218
1ld2nvve2E:219-497

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2NVV)

(-) Pfam Domains  (2, 12)

Asymmetric Unit
(-)
Clan: ISOCOT_Fold (53)

(-) Gene Ontology  (5, 5)

Asymmetric Unit(hide GO term definitions)
Chain A,B,C,D,E,F   (Q7MVN7_PORGI | Q7MVN7)
molecular function
    GO:0003824    catalytic activity    Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
    GO:0016787    hydrolase activity    Catalysis of the hydrolysis of various bonds, e.g. C-O, C-N, C-C, phosphoric anhydride bonds, etc. Hydrolase is the systematic name for any enzyme of EC class 3.
    GO:0046872    metal ion binding    Interacting selectively and non-covalently with any metal ion.
    GO:0016740    transferase activity    Catalysis of the transfer of a group, e.g. a methyl group, glycosyl group, acyl group, phosphorus-containing, or other groups, from one compound (generally regarded as the donor) to another compound (generally regarded as the acceptor). Transferase is the systematic name for any enzyme of EC class 2.
biological process
    GO:0006084    acetyl-CoA metabolic process    The chemical reactions and pathways involving acetyl-CoA, a derivative of coenzyme A in which the sulfhydryl group is acetylated; it is a metabolite derived from several pathways (e.g. glycolysis, fatty acid oxidation, amino-acid catabolism) and is further metabolized by the tricarboxylic acid cycle. It is a key intermediate in lipid and terpenoid biosynthesis.

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 Related Entries

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