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2NVV
Biol. Unit 1
Info
Asym.Unit (456 KB)
Biol.Unit 1 (155 KB)
Biol.Unit 2 (154 KB)
Biol.Unit 3 (155 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE PUTATIVE ACETYL-COA HYDROLASE/TRANSFERASE PG1013 FROM PORPHYROMONAS GINGIVALIS, NORTHEAST STRUCTURAL GENOMICS TARGET PGR16.
Authors
:
F. Forouhar, H. Neely, J. Seetharaman, W. Yong, C. K. Ho, Y. Fang, K. Cunn L. -C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Monteli J. F. Hunt, L. Tong, Northeast Structural Genomics Consortium (N
Date
:
13 Nov 06 (Deposition) - 30 Jan 07 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.70
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Keywords
:
Alpha Beta Protein, Structural Genomics, Psi-2, Protein Structure Initiative, Northeast Structural Genomics Consortium, Nesg, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
F. Forouhar, H. Neely, J. Seetharaman, W. Yong, C. K. Ho, Y. Fang, K. Cunningham, L. -C. Ma, R. Xiao, J. Liu, M. C. Baran, T. B. Acton, B. Rost, G. T. Montelione, J. F. Hunt, L. Tong
Crystal Structure Of The Putative Acetyl-Coa Hydrolase/Transferase Pg1013 From Porphyromonas Gingivalis, Northeast Structural Genomics Target Pgr16
To Be Published
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Hetero Components
(1, 24)
Info
All Hetero Components
1a: SELENOMETHIONINE (MSEa)
1aa: SELENOMETHIONINE (MSEaa)
1ab: SELENOMETHIONINE (MSEab)
1ac: SELENOMETHIONINE (MSEac)
1ad: SELENOMETHIONINE (MSEad)
1ae: SELENOMETHIONINE (MSEae)
1af: SELENOMETHIONINE (MSEaf)
1ag: SELENOMETHIONINE (MSEag)
1ah: SELENOMETHIONINE (MSEah)
1ai: SELENOMETHIONINE (MSEai)
1aj: SELENOMETHIONINE (MSEaj)
1ak: SELENOMETHIONINE (MSEak)
1al: SELENOMETHIONINE (MSEal)
1am: SELENOMETHIONINE (MSEam)
1an: SELENOMETHIONINE (MSEan)
1ao: SELENOMETHIONINE (MSEao)
1ap: SELENOMETHIONINE (MSEap)
1aq: SELENOMETHIONINE (MSEaq)
1ar: SELENOMETHIONINE (MSEar)
1as: SELENOMETHIONINE (MSEas)
1at: SELENOMETHIONINE (MSEat)
1au: SELENOMETHIONINE (MSEau)
1av: SELENOMETHIONINE (MSEav)
1aw: SELENOMETHIONINE (MSEaw)
1ax: SELENOMETHIONINE (MSEax)
1ay: SELENOMETHIONINE (MSEay)
1az: SELENOMETHIONINE (MSEaz)
1b: SELENOMETHIONINE (MSEb)
1ba: SELENOMETHIONINE (MSEba)
1bb: SELENOMETHIONINE (MSEbb)
1bc: SELENOMETHIONINE (MSEbc)
1bd: SELENOMETHIONINE (MSEbd)
1be: SELENOMETHIONINE (MSEbe)
1bf: SELENOMETHIONINE (MSEbf)
1bg: SELENOMETHIONINE (MSEbg)
1bh: SELENOMETHIONINE (MSEbh)
1bi: SELENOMETHIONINE (MSEbi)
1bj: SELENOMETHIONINE (MSEbj)
1bk: SELENOMETHIONINE (MSEbk)
1bl: SELENOMETHIONINE (MSEbl)
1bm: SELENOMETHIONINE (MSEbm)
1bn: SELENOMETHIONINE (MSEbn)
1bo: SELENOMETHIONINE (MSEbo)
1bp: SELENOMETHIONINE (MSEbp)
1bq: SELENOMETHIONINE (MSEbq)
1br: SELENOMETHIONINE (MSEbr)
1bs: SELENOMETHIONINE (MSEbs)
1bt: SELENOMETHIONINE (MSEbt)
1c: SELENOMETHIONINE (MSEc)
1d: SELENOMETHIONINE (MSEd)
1e: SELENOMETHIONINE (MSEe)
1f: SELENOMETHIONINE (MSEf)
1g: SELENOMETHIONINE (MSEg)
1h: SELENOMETHIONINE (MSEh)
1i: SELENOMETHIONINE (MSEi)
1j: SELENOMETHIONINE (MSEj)
1k: SELENOMETHIONINE (MSEk)
1l: SELENOMETHIONINE (MSEl)
1m: SELENOMETHIONINE (MSEm)
1n: SELENOMETHIONINE (MSEn)
1o: SELENOMETHIONINE (MSEo)
1p: SELENOMETHIONINE (MSEp)
1q: SELENOMETHIONINE (MSEq)
1r: SELENOMETHIONINE (MSEr)
1s: SELENOMETHIONINE (MSEs)
1t: SELENOMETHIONINE (MSEt)
1u: SELENOMETHIONINE (MSEu)
1v: SELENOMETHIONINE (MSEv)
1w: SELENOMETHIONINE (MSEw)
1x: SELENOMETHIONINE (MSEx)
1y: SELENOMETHIONINE (MSEy)
1z: SELENOMETHIONINE (MSEz)
2a: ZINC ION (ZNa)
2b: ZINC ION (ZNb)
2c: ZINC ION (ZNc)
2d: ZINC ION (ZNd)
2e: ZINC ION (ZNe)
2f: ZINC ION (ZNf)
View:
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Label:
No.
Name
Count
Type
Full Name
1
MSE
24
Mod. Amino Acid
SELENOMETHIONINE
2
ZN
-1
Ligand/Ion
ZINC ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HIS A:411 , ASP A:413 , HOH A:532 , HOH A:533 , GLU B:416 , HIS B:417
BINDING SITE FOR RESIDUE ZN B 507
2
AC2
SOFTWARE
GLU A:416 , HIS A:417 , HIS B:411 , ASP B:413 , HOH B:526
BINDING SITE FOR RESIDUE ZN A 507
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 12)
Info
All SCOP Domains
1a: SCOP_d2nvva1 (A:2-218)
1b: SCOP_d2nvva2 (A:219-497)
1c: SCOP_d2nvvf1 (F:2-218)
1d: SCOP_d2nvvf2 (F:219-497)
1e: SCOP_d2nvvb1 (B:2-218)
1f: SCOP_d2nvvb2 (B:219-497)
1g: SCOP_d2nvvc1 (C:2-218)
1h: SCOP_d2nvvc2 (C:219-497)
1i: SCOP_d2nvvd1 (D:2-218)
1j: SCOP_d2nvvd2 (D:219-497)
1k: SCOP_d2nvve1 (E:2-218)
1l: SCOP_d2nvve2 (E:219-497)
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Protein Domains
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Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
NagB/RpiA/CoA transferase-like
(94)
Superfamily
:
NagB/RpiA/CoA transferase-like
(94)
Family
:
automated matches
(19)
Protein domain
:
automated matches
(19)
Porphyromonas gingivalis [TaxId: 242619]
(1)
1a
d2nvva1
A:2-218
1b
d2nvva2
A:219-497
1c
d2nvvf1
F:2-218
1d
d2nvvf2
F:219-497
1e
d2nvvb1
B:2-218
1f
d2nvvb2
B:219-497
1g
d2nvvc1
C:2-218
1h
d2nvvc2
C:219-497
1i
d2nvvd1
D:2-218
1j
d2nvvd2
D:219-497
1k
d2nvve1
E:2-218
1l
d2nvve2
E:219-497
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
(2, 12)
Info
all PFAM domains
1a: PFAM_AcetylCoA_hyd_C_2nvvF01 (F:314-460)
1b: PFAM_AcetylCoA_hyd_C_2nvvF02 (F:314-460)
1c: PFAM_AcetylCoA_hyd_C_2nvvF03 (F:314-460)
1d: PFAM_AcetylCoA_hyd_C_2nvvF04 (F:314-460)
1e: PFAM_AcetylCoA_hyd_C_2nvvF05 (F:314-460)
1f: PFAM_AcetylCoA_hyd_C_2nvvF06 (F:314-460)
2a: PFAM_AcetylCoA_hydro_2nvvF07 (F:2-211)
2b: PFAM_AcetylCoA_hydro_2nvvF08 (F:2-211)
2c: PFAM_AcetylCoA_hydro_2nvvF09 (F:2-211)
2d: PFAM_AcetylCoA_hydro_2nvvF10 (F:2-211)
2e: PFAM_AcetylCoA_hydro_2nvvF11 (F:2-211)
2f: PFAM_AcetylCoA_hydro_2nvvF12 (F:2-211)
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Clan
:
ISOCOT_Fold
(53)
Family
:
AcetylCoA_hyd_C
(2)
Porphyromonas gingivalis (Bacteroides gingivalis)
(1)
1a
AcetylCoA_hyd_C-2nvvF01
F:314-460
1b
AcetylCoA_hyd_C-2nvvF02
F:314-460
1c
AcetylCoA_hyd_C-2nvvF03
F:314-460
1d
AcetylCoA_hyd_C-2nvvF04
F:314-460
1e
AcetylCoA_hyd_C-2nvvF05
F:314-460
1f
AcetylCoA_hyd_C-2nvvF06
F:314-460
Family
:
AcetylCoA_hydro
(2)
Porphyromonas gingivalis (Bacteroides gingivalis)
(1)
2a
AcetylCoA_hydro-2nvvF07
F:2-211
2b
AcetylCoA_hydro-2nvvF08
F:2-211
2c
AcetylCoA_hydro-2nvvF09
F:2-211
2d
AcetylCoA_hydro-2nvvF10
F:2-211
2e
AcetylCoA_hydro-2nvvF11
F:2-211
2f
AcetylCoA_hydro-2nvvF12
F:2-211
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