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(-) Description

Title :  STRUCTURE OF SUMO-2 BOUND TO PHOSPHORYLATED RAP80 SIM
 
Authors :  A. Anamika, L. Spyracopoulos
Date :  15 Nov 15  (Deposition) - 20 Jan 16  (Release) - 23 Mar 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (20x)
NMR Structure *:  A,B  (1x)
Keywords :  Sumo-2-Phosphorap80, Sumo-2-Phosphosim, Protein Binding (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Anamika, L. Spyracopoulos
Molecular Basis For Phosphorylation-Dependent Sumo Recognition By The Dna Repair Protein Rap80.
J. Biol. Chem. V. 291 4417 2016
PubMed-ID: 26719330  |  Reference-DOI: 10.1074/JBC.M115.705061

(-) Compounds

Molecule 1 - BRCA1-A COMPLEX SUBUNIT RAP80
    Chains: A
    Engineered: YES
    Fragment: SUMO INTERACTING MOTIF (UNP RESIDUES 37-49)
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: RECEPTOR-ASSOCIATED PROTEIN 80, RETINOID X RECEPTOR- INTERACTING PROTEIN 110, UBIQUITIN INTERACTION MOTIF-CONTAINING PROTEIN 1
    Synthetic: YES
 
Molecule 2 - SMALL UBIQUITIN-RELATED MODIFIER 2
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: SUMO2, SMT3B, SMT3H2
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: SUMO-2, HSMT3, SMT3 HOMOLOG 2, SUMO-3, SENTRIN-2, UBIQUITIN- LIKE PROTEIN SMT3B, SMT3B

 Structural Features

(-) Chains, Units

  12
NMR Structure (20x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 4)

NMR Structure (3, 4)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP
3SEP2Mod. Amino AcidPHOSPHOSERINE
NMR Structure * (3, 4)
No.NameCountTypeFull Name
1ACE1Mod. Amino AcidACETYL GROUP
2NH21Mod. Amino AcidAMINO GROUP
3SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (0, 0)

(no "Site" information available for 2N9E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N9E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N9E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N9E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N9E)

(-) Exons   (0, 0)

(no "Exon" information available for 2N9E)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:15
                                              
               SCOP domains --------------- SCOP domains
               CATH domains --------------- CATH domains
               Pfam domains --------------- Pfam domains
         Sec.struct. author ....eeee....... Sec.struct. author
                 SAPs(SNPs) --------------- SAPs(SNPs)
                    PROSITE --------------- PROSITE
                 Transcript --------------- Transcript
                  2n9e A 36 xEDAFIVIsDsDGEx 50
                            |       45|   |
                            |      44-SEP |
                           36-ACE    46-SEP
                                         50-NH2


Chain B from PDB  Type:PROTEIN  Length:95
                                                                                                                              
               SCOP domains ----------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ................eeeeeee.....eeeeeee...hhhhhhhhhhhhhh.hhhhheeee..ee................eeeee........ Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------- Transcript
                  2n9e B  1 MADEKPKEGVKTENNDHINLKVAGQDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINETDTPAQLEMEDEDTIDVFQQQTGGVY 95
                                    10        20        30        40        50        60        70        80        90
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N9E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N9E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N9E)

(-) Gene Ontology  (23, 26)

NMR Structure(hide GO term definitions)

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  SUMO2_HUMAN | P61956
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        SUMO2_HUMAN | P61956: 1wm2 1wm3 1wz0 1z5q 2awt 2ckh 2d07 2io0 2io3 2iyd 2n1w 2rpq 3uin 3uio 3zo5 4bkg 4npn 5d2m 5elu 5eql 5ghb 5ghc
        UIMC1_HUMAN | Q96RL1: 2mkf 2mkg 2rr9

(-) Related Entries Specified in the PDB File

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