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(-) Description

Title :  DDFLN5+110
 
Authors :  L. D. Cabrita, A. M. E. Cassaignau, H. M. M. Launay, C. A. Waudby, C. Camil A. L. Robertson, X. Wang, T. Wlodarski, A. S. Wentink, M. Vendruscolo, C. M. Dobson, J. Christodoulou
Date :  10 Aug 15  (Deposition) - 02 Mar 16  (Release) - 20 Apr 16  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  L  (3x)
NMR Structure *:  L  (1x)
Keywords :  Translation (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. D. Cabrita, A. M. Cassaignau, H. M. Launay, C. A. Waudby, T. Wlodarski, C. Camilloni, M. E. Karyadi, A. L. Robertson, X. Wang, A. S. Wentink, L. S. Goodsell, C. A. Woolhead, M. Vendruscolo, C. M. Dobson, J. Christodoulou
A Structural Ensemble Of A Ribosome-Nascent Chain Complex During Cotranslational Protein Folding.
Nat. Struct. Mol. Biol. V. 23 278 2016
PubMed-ID: 26926436  |  Reference-DOI: 10.1038/NSMB.3182

(-) Compounds

Molecule 1 - GELATION FACTOR, SECRETION MONITOR CHIMERA
    Chains: L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: SEE REMARK 999
    Organism Common: SLIME MOLD
    Organism Scientific: DICTYOSTELIUM DISCOIDEUM, ESCHERICHIA COLI
    Organism Taxid: 44689,562
    Synonym: DDFLN5+110

 Structural Features

(-) Chains, Units

  1
NMR Structure (3x): L
NMR Structure * (1x): L

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N62)

(-) Sites  (0, 0)

(no "Site" information available for 2N62)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N62)

(-) Cis Peptide Bonds  (3, 9)

NMR Structure
No.ModelResidues
11, 2, 3Met L:104 -Pro L:105
21, 2, 3Asp L:118 -Ser L:119
31, 2, 3Glu L:203 -Leu L:204

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N62)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N62)

(-) Exons   (0, 0)

(no "Exon" information available for 2N62)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain L from PDB  Type:PROTEIN  Length:221
                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eee......ee....eeeeee...............eeeeee.....eee.eeee....eeeeee......eeeeeeee.........eeeeee.......hhhhh............................hhhhheee.......eee.................................................... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2n62 L   1 HHHHHHASKPAPSAEHSYAEGEGLVKVFDNAPAEFTIFAVDTKGVARTDGGDPFEVAINGPDGLVVDAKVTDNNDGTYGVVYDAPVEGNYNVNVTLRGNPIKNMPIDVKCIEGANGEDSSFGSFTFTVAAKNKKGEVKTYGGDKFEVSITGPAEEITLDAIDNQDGTYTAAYSLVGNGRFSTGVKLNGKHIEGSPFKQVLGNELFSTPVWISQAQGIRAGP 221
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N62)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N62)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N62)

(-) Gene Ontology  (24, 25)

NMR Structure(hide GO term definitions)

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  Cis Peptide Bonds
    Asp L:118 - Ser L:119   [ RasMol ]  
    Glu L:203 - Leu L:204   [ RasMol ]  
    Met L:104 - Pro L:105   [ RasMol ]  
 

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  2n62
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GELA_DICDI | P13466: 1ksr 1qfh 1wlh
        SECM_ECOLI | P62395: 3jbv

(-) Related Entries Specified in the PDB File

(no "Related Entries Specified in the PDB File" available for 2N62)