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(-) Description

Title :  THE REPEATING SEGMENTS OF THE F-ACTIN CROSS-LINKING GELATION FACTOR (ABP-120) HAVE AN IMMUNOGLOBULIN FOLD, NMR, 20 STRUCTURES
 
Authors :  P. Fucini, C. Renner, C. Herberhold, A. A. Noegel, T. A. Holak
Date :  07 Feb 97  (Deposition) - 20 Aug 97  (Release) - 24 Feb 09  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
Keywords :  Actin Binding Protein, Structure, Immunoglobulin, Gelation Factor, Abp-120 (Keyword Search: [Gene Ontology, PubMed, Web (Google))
 
Reference :  P. Fucini, C. Renner, C. Herberhold, A. A. Noegel, T. A. Holak
The Repeating Segments Of The F-Actin Cross-Linking Gelation Factor (Abp-120) Have An Immunoglobulin-Like Fold.
Nat. Struct. Biol. V. 4 223 1997
PubMed-ID: 9164464  |  Reference-DOI: 10.1038/NSB0397-223
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - GELATION FACTOR
    Cellular LocationCYTOPLASM, CELL CORTEX
    Cell LineBL21
    ChainsA
    EngineeredYES
    Expression SystemESCHERICHIA COLI
    Expression System Cellular LocationCYTOPLASM
    Expression System GeneT7
    Expression System PlasmidPT7-7
    Expression System StrainBL21 (DE)
    Expression System Taxid562
    Expression System Vector TypeT7 PROMOTER
    FragmentROD 4
    GeneABPC
    Organism ScientificDICTYOSTELIUM DISCOIDEUM
    Organism Taxid44689
    StrainAX3
    SynonymABP-120

 Structural Features

(-) Chains, Units

  
NMR Structure (20x)

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 1KSR)

(-) Sites  (0, 0)

(no "Site" information available for 1KSR)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 1KSR)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 1KSR)

(-) PROSITE Motifs  (1, 1)

NMR Structure (1, 1)
 PROSITEUniProtKBPDB
No.IDACDescriptionIDLocationCountLocation
1FILAMIN_REPEATPS50194 Filamin/ABP280 repeat profile.GELA_DICDI245-346
346-446
446-545
546-645
646-747
763-837
  1-
-
-
-
A:98-100
-

(-) Exons   (0, 0)

(no "Exon" information available for 1KSR)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:100
 aligned with GELA_DICDI | P13466 from UniProtKB/Swiss-Prot  Length:857

    Alignment length:100
                                   558       568       578       588       598       608       618       628       638       648
           GELA_DICDI   549 ADPEKSYAEGPGLDGGECFQPSKFKIHAVDPDGVHRTDGGDGFVVTIEGPAPVDPVMVDNGDGTYDVEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPA 648
               SCOP domains d1ksra_ A: F-actin cross-linking gelation factor (ABP-120) repeats                                   SCOP domains
               CATH domains 1ksrA00 A:1-100 Immunoglobulins                                                                      CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee............eeeeeee..............eeeeee........eee....eeeeee.....eeeeeeeee..........eeee... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE FILAMIN_REPEAT  PDB: - UniProt: 546-645                                                          FIL PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------- Transcript
                 1ksr A   1 ADPEKSYAEGPGLDGGECFQPSKFKIHAVDPDGVHRTDGGDGFVVTIEGPAPVDPVMVDNGDGTYDVEFEPKEAGDYVINLTLDGDNVNGFPKTVTVKPA 100
                                    10        20        30        40        50        60        70        80        90       100

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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure

(-) CATH Domains  (1, 1)

NMR Structure
(-)
Class: Mainly Beta (13760)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 1KSR)

(-) Gene Ontology  (20, 20)

NMR Structure(hide GO term definitions)
Chain A   (GELA_DICDI | P13466)
molecular function
    GO:0003779    actin binding    Interacting selectively and non-covalently with monomeric or multimeric forms of actin, including actin filaments.
    GO:0051015    actin filament binding    Interacting selectively and non-covalently with an actin filament, also known as F-actin, a helical filamentous polymer of globular G-actin subunits.
    GO:0005515    protein binding    Interacting selectively and non-covalently with any protein or protein complex (a complex of two or more proteins that may include other nonprotein molecules).
    GO:0042803    protein homodimerization activity    Interacting selectively and non-covalently with an identical protein to form a homodimer.
biological process
    GO:0030036    actin cytoskeleton organization    A process that is carried out at the cellular level which results in the assembly, arrangement of constituent parts, or disassembly of cytoskeletal structures comprising actin filaments and their associated proteins.
    GO:0016477    cell migration    The controlled self-propelled movement of a cell from one site to a destination guided by molecular cues. Cell migration is a central process in the development and maintenance of multicellular organisms.
    GO:0048870    cell motility    Any process involved in the controlled self-propelled movement of a cell that results in translocation of the cell from one place to another.
    GO:0006972    hyperosmotic response    Any process that results in a change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of detection of, or exposure to, a hyperosmotic environment, i.e. an environment with a higher concentration of solutes than the organism or cell.
    GO:0044351    macropinocytosis    An endocytosis process that results in the uptake of liquid material by cells from their external environment by the 'ruffling' of the cell membrane to form heterogeneously sized intracellular vesicles called macropinosomes, which can be up to 5 micrometers in size.
    GO:0006909    phagocytosis    An endocytosis process that results in the engulfment of external particulate material by phagocytes. The particles are initially contained within phagocytic vacuoles (phagosomes), which then fuse with primary lysosomes to effect digestion of the particles.
    GO:0042331    phototaxis    The directed movement of a motile cell or organism in response to light.
    GO:0030587    sorocarp development    The process whose specific outcome is the progression of the sorocarp over time, from its formation to the mature structure. The process begins with the aggregation of individual cells and ends with the mature sorocarp. The sorocarp is a structure containing a spore-bearing sorus that sits on top of a stalk. An example of this process is found in Dictyostelium discoideum.
    GO:0043052    thermotaxis    The directed movement of a motile cell or organism in response to a temperature gradient. Movement may be towards either a higher or lower temperature.
cellular component
    GO:0015629    actin cytoskeleton    The part of the cytoskeleton (the internal framework of a cell) composed of actin and associated proteins. Includes actin cytoskeleton-associated complexes.
    GO:0005938    cell cortex    The region of a cell that lies just beneath the plasma membrane and often, but not always, contains a network of actin filaments and associated proteins.
    GO:0031252    cell leading edge    The area of a motile cell closest to the direction of movement.
    GO:0030864    cortical actin cytoskeleton    The portion of the actin cytoskeleton, comprising filamentous actin and associated proteins, that lies just beneath the plasma membrane.
    GO:0005737    cytoplasm    All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
    GO:0001891    phagocytic cup    An invagination of the cell membrane formed by an actin dependent process during phagocytosis. Following internalization it is converted into a phagosome.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        GELA_DICDI | P134661qfh 1wlh 2n62

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