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(-) Description

Title :  THE 3D SOLUTION STRUCTURE OF DISCOIDAL HIGH-DENSITY LIPOPROTEIN PARTICLES
 
Authors :  S. Bibow, Y. Polyhach, C. Eichmann, C. N. Chi, J. Kowal, H. Stahlberg, G. P. Guentert, R. Riek
Date :  15 Jul 15  (Deposition) - 21 Dec 16  (Release) - 22 Feb 17  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A,B  (10x)
NMR Structure *:  A,B  (1x)
Keywords :  Nanodisc, Hdl, Lipoproteins, Cardiovascular Disease, Lipid Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. Bibow, Y. Polyhach, C. Eichmann, C. N. Chi, J. Kowal, S. Albiez, R. A. Mcleod, H. Stahlberg, G. Jeschke, P. Guntert, R. Riek
Solution Structure Of Discoidal High-Density Lipoprotein Particles With A Shortened Apolipoprotein A-I.
Nat. Struct. Mol. Biol. V. 24 187 2017
PubMed-ID: 28024148  |  Reference-DOI: 10.1038/NSMB.3345

(-) Compounds

Molecule 1 - APOLIPOPROTEIN A-I
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector: PET28A
    Gene: APOA1
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: APO-AI, APOA-I, APOLIPOPROTEIN A1, PROAPOLIPOPROTEIN A-I, PROAPOA-I, TRUNCATED APOLIPOPROTEIN A-I, APOLIPOPROTEIN A-I(1-242)

 Structural Features

(-) Chains, Units

  12
NMR Structure (10x): AB
NMR Structure * (1x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2N5E)

(-) Sites  (0, 0)

(no "Site" information available for 2N5E)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2N5E)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2N5E)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2N5E)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2N5E)

(-) Exons   (0, 0)

(no "Exon" information available for 2N5E)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2n5e A  55 STFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ 243
                                    64        74        84        94       104       114     ||146       156       166       176       186       196       206       216       226       236       
                                                                                           120|                                                                                                    
                                                                                            143                                                                                                    


Chain B from PDB  Type:PROTEIN  Length:167
                                                                                                                                                                                                       
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...hhhhhh....hhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2n5e B  55 STFSKLREQLGPVTQEFWDNLEKETEGLRQEMSKDLEEVKAKVQPYLDDFQKKWQEEMELYRQKVEPLGEEMRDRARAHVDALRTHLAPYSDELRQRLAARLEALKENGGARLAEYHAKATEHLSTLSEKAKPALEDLRQGLLPVLESFKVSFLSALEEYTKKLNTQ 243
                                    64        74        84        94       104       114     ||146       156       166       176       186       196       206       216       226       236       
                                                                                           120|                                                                                                    
                                                                                            143
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2N5E)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2N5E)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2N5E)

(-) Gene Ontology  (108, 108)

NMR Structure(hide GO term definitions)

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  2n5e
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  APOA1_HUMAN | P02647
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        APOA1_HUMAN | P02647: 1av1 1gw3 1gw4 1odp 1odq 1odr 2a01 2msc 2msd 2mse 3k2s 3r2p 4v6m

(-) Related Entries Specified in the PDB File

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