2N3R - JenaLib

Title :   NMR STRUCTURE OF THE II-III-VI THREE-WAY JUNCTION FROM THE VS RIBOZYME AND IDENTIFICATION OF MAGNESIUM-BINDING SITES USING PARAMAGNETIC RELAXATION ENHANCEMENT

Authors :   E. Bonneau, N. Girard, S. Lemieux, P. Legault

Date :   09 Jun 15 (Deposition) - 15 Jul 15 (Release) - 02 Sep 15 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (21x)
NMR Structure *: A  (1x)

Keywords :   Rna, Vs Ribozyme, Catalysis, Mg2+ Ions (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   E. Bonneau, N. Girard, S. Lemieux, P. Legault
The Nmr Structure Of The Ii-Iii-Vi Three-Way Junction From The Neurospora Vs Ribozyme Reveals A Critical Tertiary Interaction And Provides New Insights Into The Global Ribozyme Structure.
Rna V. 21 1621 2015
PubMed-ID: 26124200 | Reference-DOI: 10.1261/RNA.052076.115

Compounds

Molecule 1 - RNA (62-MER)
	Chains	:	A
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI
	Expression System Taxid	:	562
	Expression System Vector	:	PTZ19R-DERIVED PTR-4
	Organism Scientific	:	NEUROSPORA CRASSA
	Organism Taxid	:	5141

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (1, 8)

Sites (8, 8)

NMR Structure (8, 8)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	HOH A:201 , HOH A:202 , HOH A:203 , HOH A:204 , HOH A:205 , HOH A:206	BINDING SITE FOR RESIDUE MG A 101
2	AC2	SOFTWARE	HOH A:207 , HOH A:208 , HOH A:209 , HOH A:210 , HOH A:211 , HOH A:212	BINDING SITE FOR RESIDUE MG A 102
3	AC3	SOFTWARE	HOH A:213 , HOH A:214 , HOH A:215 , HOH A:216 , HOH A:217 , HOH A:218	BINDING SITE FOR RESIDUE MG A 103
4	AC4	SOFTWARE	HOH A:219 , HOH A:220 , HOH A:221 , HOH A:222 , HOH A:223 , HOH A:224	BINDING SITE FOR RESIDUE MG A 104
5	AC5	SOFTWARE	HOH A:225 , HOH A:226 , HOH A:227 , HOH A:228 , HOH A:229 , HOH A:230	BINDING SITE FOR RESIDUE MG A 105
6	AC6	SOFTWARE	HOH A:231 , HOH A:232 , HOH A:233 , HOH A:234 , HOH A:235 , HOH A:236	BINDING SITE FOR RESIDUE MG A 106
7	AC7	SOFTWARE	C A:5 , G A:7 , C A:56 , HOH A:237 , HOH A:238 , HOH A:239 , HOH A:240 , HOH A:241 , HOH A:242	BINDING SITE FOR RESIDUE MG A 107
8	AC8	SOFTWARE	G A:9 , HOH A:243 , HOH A:244 , HOH A:245 , HOH A:246 , HOH A:247 , HOH A:248	BINDING SITE FOR RESIDUE MG A 108

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

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Chain A from PDB  Type:RNA  Length:62
                                                                                             
                  2n3r A  1 GCAGCAGGGAACUCACGCUUGCGUAGAGGCUAAGUGCUUCGGCACAGCACAAGCCCGCUGCG 62
                                    10        20        30        40        50        60

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Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (0, 0)

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