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(-) Description

Title :  NMR SOLUTION STRUCTURE OF THE PRO FORM OF HUMAN MATRILYSIN (PROMMP-7)
 
Authors :  S. H. Prior, Y. G. Fulcher, S. R. Van Doren
Date :  11 Feb 15  (Deposition) - 11 Nov 15  (Release) - 11 Nov 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Zymogen, Hydrolase, Metalloenzyme (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Prior, Y. G. Fulcher, R. K. Koppisetti, A. Jurkevich, S. R. Van Doren
Charge-Triggered Membrane Insertion Of Matrix Metalloproteinase-7, Supporter Of Innate Immunity And Tumors.
Structure V. 23 2099 2015
PubMed-ID: 26439767  |  Reference-DOI: 10.1016/J.STR.2015.08.013

(-) Compounds

Molecule 1 - MATRILYSIN
    Chains: A
    EC Number: 3.4.24.23
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector: PET28-A
    Gene: MMP7, MPSL1, PUMP1
    Mutation: YES
    Organism Common: HUMAN
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
    Synonym: MATRIN, MATRIX METALLOPROTEINASE-7, MMP-7, PUMP-1 PROTEASE, UTERINE METALLOPROTEINASE

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

NMR Structure (2, 4)
No.NameCountTypeFull Name
1CA2Ligand/IonCALCIUM ION
2ZN2Ligand/IonZINC ION
NMR Structure * (0, 0)
No.NameCountTypeFull Name
1CA-1Ligand/IonCALCIUM ION
2ZN-1Ligand/IonZINC ION

(-) Sites  (4, 4)

NMR Structure (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:133 , GLY A:165 , LEU A:166 , GLY A:167 , ASP A:169BINDING SITE FOR RESIDUE CA A 301
2AC2SOFTWAREASP A:150 , GLY A:151 , GLY A:153 , ASN A:154 , THR A:155 , ASP A:173 , GLU A:176BINDING SITE FOR RESIDUE CA A 302
3AC3SOFTWAREHIS A:143 , ASP A:145 , HIS A:158 , PHE A:160 , HIS A:171BINDING SITE FOR RESIDUE ZN A 303
4AC4SOFTWARECYS A:67 , HIS A:194 , HIS A:198 , HIS A:204BINDING SITE FOR RESIDUE ZN A 304

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MZE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MZE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MZE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MZE)

(-) Exons   (0, 0)

(no "Exon" information available for 2MZE)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:250
                                                                                                                                                                                                                                                                                          
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhh........hhhhhhhhh........................eeeee.......hhhhhhhhhhhhhhhhhhh....ee........eeeeee..............................eeee....ee......eehhhhhhhhhhhhh..........................hhhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 2mze A  -2 LPLPQEAGGMSELQWEQAQDYLKRFYLYDSETKNANSLEAKLKEMQKFFGLPITGMLNSRVIEIMQKPRCGVPDVAEYSLFPNSPKWTSKVVTYRIVSYTRDLPHITVDRLVSKALNMWGKEIPLHFRKVVWGTADIMIGFARGAHGDSYPFDGPGNTLAHAFAPGTGLGGDAHFDEDERWTDGSSLGINFLYAATHALGHSLGMGHSSDPNAVMYPTYGNGDPQNFKLSQDDIKGIQKLYGKRSNSRKK 247
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207       217       227       237       247
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MZE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MZE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MZE)

(-) Gene Ontology  (22, 22)

NMR Structure(hide GO term definitions)

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  2mze
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  MMP7_HUMAN | P09237
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  3.4.24.23
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MMP7_HUMAN | P09237: 1mmp 1mmq 1mmr 2ddy 2mzh 2mzi 2y6c 2y6d

(-) Related Entries Specified in the PDB File

1mmp ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 2.3A
1mmq ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 1.9A
1mmr ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 2.4A RELATED ID: 25485 RELATED DB: BMRB
2y6c ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 1.7A
2y6d ACTIVE, INHIBITOR-BOUND CRYSTAL STRUCTURE, 1.6A