2MJT - JenaLib

Title :   ANOPLIN R5F T8W IN DPC MICELLES

Authors :   L. Uggerhoej, T. J. Poulsen, R. Wimmer

Date :   16 Jan 14 (Deposition) - 03 Dec 14 (Release) - 28 Jan 15 (Revision)

Method :   SOLUTION NMR

Resolution :   NOT APPLICABLE

Chains :   NMR Structure  : A  (20x)
NMR Structure *: A  (1x)

Keywords :   Amphipathic Helix, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   L. E. Uggerhj, T. J. Poulsen, J. K. Munk, M. Fredborg, T. E. Sondergaard N. Frimodt-Moller, P. R. Hansen, R. Wimmer
Rational Design Of Alpha-Helical Antimicrobial Peptides: Do'S And Don'Ts.
Chembiochem V. 16 242 2015
PubMed-ID: 25530580 | Reference-DOI: 10.1002/CBIC.201402581

Compounds

Molecule 1 - ANOPLIN
	Chains	:	A
	Engineered	:	YES
	Mutation	:	YES
	Organism Common	:	SOLITARY WASP
	Organism Scientific	:	ANOPLIUS SAMARIENSIS
	Organism Taxid	:	200614
	Synonym	:	AS-183
	Synthetic	:	YES

Structural Features

Chains, Units

		1
NMR Structure (20x)	:	A
NMR Structure * (1x)	:	A

Summary Information (see also Sequences/Alignments below)

Ligands, Modified Residues, Ions (3, 67)

NMR Structure (3, 67)

No.	Name	Count	Type	Full Name
1	DPV	65	Ligand/Ion	DODECYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE
2	NH2	1	Mod. Amino Acid	AMINO GROUP
3	UNX	1	Ligand/Ion	UNKNOWN ATOM OR ION

NMR Structure * (3, 67)

No.	Name	Count	Type	Full Name
1	DPV	65	Ligand/Ion	DODECYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE
2	NH2	1	Mod. Amino Acid	AMINO GROUP
3	UNX	1	Ligand/Ion	UNKNOWN ATOM OR ION

Sites (63, 63)

NMR Structure (63, 63)

No.	Name	Evidence	Residues	Description
01	AC1	SOFTWARE	DPV A:103	BINDING SITE FOR RESIDUE DPV A 102
02	AC2	SOFTWARE	DPV A:102 , DPV A:117 , DPV A:120 , DPV A:131	BINDING SITE FOR RESIDUE DPV A 103
03	AC3	SOFTWARE	DPV A:118 , DPV A:119 , DPV A:121 , DPV A:144 , DPV A:160	BINDING SITE FOR RESIDUE DPV A 104
04	AC4	SOFTWARE	DPV A:132 , DPV A:133 , DPV A:134	BINDING SITE FOR RESIDUE DPV A 105
05	AC5	SOFTWARE	PHE A:5 , DPV A:132 , DPV A:133 , DPV A:134 , DPV A:152	BINDING SITE FOR RESIDUE DPV A 106
06	AC6	SOFTWARE	PHE A:5 , DPV A:135	BINDING SITE FOR RESIDUE DPV A 107
07	AC7	SOFTWARE	DPV A:109 , DPV A:110 , DPV A:135	BINDING SITE FOR RESIDUE DPV A 108
08	AC8	SOFTWARE	DPV A:108 , DPV A:133 , DPV A:134 , DPV A:135 , DPV A:157	BINDING SITE FOR RESIDUE DPV A 109
09	AC9	SOFTWARE	DPV A:108 , DPV A:111 , DPV A:122 , DPV A:123	BINDING SITE FOR RESIDUE DPV A 110
10	BC1	SOFTWARE	DPV A:110 , DPV A:124 , DPV A:157	BINDING SITE FOR RESIDUE DPV A 111
11	BC2	SOFTWARE	DPV A:126 , DPV A:138 , DPV A:139	BINDING SITE FOR RESIDUE DPV A 112
12	BC3	SOFTWARE	DPV A:114 , DPV A:138	BINDING SITE FOR RESIDUE DPV A 113
13	BC4	SOFTWARE	DPV A:113 , DPV A:128 , DPV A:138	BINDING SITE FOR RESIDUE DPV A 114
14	BC5	SOFTWARE	DPV A:142 , DPV A:143 , DPV A:160	BINDING SITE FOR RESIDUE DPV A 115
15	BC6	SOFTWARE	DPV A:128 , DPV A:151	BINDING SITE FOR RESIDUE DPV A 116
16	BC7	SOFTWARE	DPV A:103 , DPV A:118 , DPV A:143	BINDING SITE FOR RESIDUE DPV A 117
17	BC8	SOFTWARE	DPV A:104 , DPV A:117 , DPV A:143 , DPV A:160	BINDING SITE FOR RESIDUE DPV A 118
18	BC9	SOFTWARE	DPV A:104 , DPV A:120 , DPV A:121 , DPV A:131	BINDING SITE FOR RESIDUE DPV A 119
19	CC1	SOFTWARE	DPV A:103 , DPV A:119 , DPV A:131 , DPV A:132	BINDING SITE FOR RESIDUE DPV A 120
20	CC2	SOFTWARE	DPV A:104 , DPV A:119 , DPV A:161	BINDING SITE FOR RESIDUE DPV A 121
21	CC3	SOFTWARE	TRP A:8 , LEU A:9 , NH2 A:11 , DPV A:110 , DPV A:123	BINDING SITE FOR RESIDUE DPV A 122
22	CC4	SOFTWARE	DPV A:110 , DPV A:122	BINDING SITE FOR RESIDUE DPV A 123
23	CC5	SOFTWARE	DPV A:111 , DPV A:125 , DPV A:137 , DPV A:148	BINDING SITE FOR RESIDUE DPV A 124
24	CC6	SOFTWARE	DPV A:124 , DPV A:126	BINDING SITE FOR RESIDUE DPV A 125
25	CC7	SOFTWARE	DPV A:112 , DPV A:125 , DPV A:142	BINDING SITE FOR RESIDUE DPV A 126
26	CC8	SOFTWARE	DPV A:142 , DPV A:149	BINDING SITE FOR RESIDUE DPV A 127
27	CC9	SOFTWARE	DPV A:114 , DPV A:116	BINDING SITE FOR RESIDUE DPV A 128
28	DC1	SOFTWARE	DPV A:130 , DPV A:151 , DPV A:159	BINDING SITE FOR RESIDUE DPV A 129
29	DC2	SOFTWARE	DPV A:129 , DPV A:151	BINDING SITE FOR RESIDUE DPV A 130
30	DC3	SOFTWARE	DPV A:103 , DPV A:119 , DPV A:120 , DPV A:132	BINDING SITE FOR RESIDUE DPV A 131
31	DC4	SOFTWARE	DPV A:105 , DPV A:106 , DPV A:120 , DPV A:131	BINDING SITE FOR RESIDUE DPV A 132
32	DC5	SOFTWARE	DPV A:105 , DPV A:106 , DPV A:109	BINDING SITE FOR RESIDUE DPV A 133
33	DC6	SOFTWARE	DPV A:105 , DPV A:106 , DPV A:109	BINDING SITE FOR RESIDUE DPV A 134
34	DC7	SOFTWARE	DPV A:107 , DPV A:108 , DPV A:109	BINDING SITE FOR RESIDUE DPV A 135
35	DC8	SOFTWARE	DPV A:124	BINDING SITE FOR RESIDUE DPV A 137
36	DC9	SOFTWARE	DPV A:112 , DPV A:113 , DPV A:114	BINDING SITE FOR RESIDUE DPV A 138
37	EC1	SOFTWARE	DPV A:112 , DPV A:140 , DPV A:153 , DPV A:164	BINDING SITE FOR RESIDUE DPV A 139
38	EC2	SOFTWARE	DPV A:139 , DPV A:153	BINDING SITE FOR RESIDUE DPV A 140
39	EC3	SOFTWARE	DPV A:153 , DPV A:159 , DPV A:164	BINDING SITE FOR RESIDUE DPV A 141
40	EC4	SOFTWARE	DPV A:115 , DPV A:126 , DPV A:127	BINDING SITE FOR RESIDUE DPV A 142
41	EC5	SOFTWARE	DPV A:115 , DPV A:117 , DPV A:118 , DPV A:160	BINDING SITE FOR RESIDUE DPV A 143
42	EC6	SOFTWARE	DPV A:104	BINDING SITE FOR RESIDUE DPV A 144
43	EC7	SOFTWARE	LEU A:10	BINDING SITE FOR RESIDUE DPV A 145
44	EC8	SOFTWARE	DPV A:148	BINDING SITE FOR RESIDUE DPV A 146
45	EC9	SOFTWARE	LEU A:10	BINDING SITE FOR RESIDUE DPV A 147
46	FC1	SOFTWARE	DPV A:124 , DPV A:146 , DPV A:150	BINDING SITE FOR RESIDUE DPV A 148
47	FC2	SOFTWARE	DPV A:127 , DPV A:166	BINDING SITE FOR RESIDUE DPV A 149
48	FC3	SOFTWARE	DPV A:148 , DPV A:162	BINDING SITE FOR RESIDUE DPV A 150
49	FC4	SOFTWARE	DPV A:116 , DPV A:129 , DPV A:130 , DPV A:152	BINDING SITE FOR RESIDUE DPV A 151
50	FC5	SOFTWARE	DPV A:106 , DPV A:151	BINDING SITE FOR RESIDUE DPV A 152
51	FC6	SOFTWARE	DPV A:139 , DPV A:140 , DPV A:141	BINDING SITE FOR RESIDUE DPV A 153
52	FC7	SOFTWARE	DPV A:155 , DPV A:164	BINDING SITE FOR RESIDUE DPV A 154
53	FC8	SOFTWARE	DPV A:154	BINDING SITE FOR RESIDUE DPV A 155
54	FC9	SOFTWARE	DPV A:109 , DPV A:111 , DPV A:158 , DPV A:165	BINDING SITE FOR RESIDUE DPV A 157
55	GC1	SOFTWARE	DPV A:157 , DPV A:163 , DPV A:165	BINDING SITE FOR RESIDUE DPV A 158
56	GC2	SOFTWARE	DPV A:129 , DPV A:141	BINDING SITE FOR RESIDUE DPV A 159
57	GC3	SOFTWARE	DPV A:104 , DPV A:115 , DPV A:118 , DPV A:143 , DPV A:161	BINDING SITE FOR RESIDUE DPV A 160
58	GC4	SOFTWARE	DPV A:121 , DPV A:160	BINDING SITE FOR RESIDUE DPV A 161
59	GC5	SOFTWARE	DPV A:150	BINDING SITE FOR RESIDUE DPV A 162
60	GC6	SOFTWARE	DPV A:158	BINDING SITE FOR RESIDUE DPV A 163
61	GC7	SOFTWARE	DPV A:139 , DPV A:141 , DPV A:154	BINDING SITE FOR RESIDUE DPV A 164
62	GC8	SOFTWARE	DPV A:157 , DPV A:158	BINDING SITE FOR RESIDUE DPV A 165
63	GC9	SOFTWARE	DPV A:149	BINDING SITE FOR RESIDUE DPV A 166

SS Bonds (0, 0)

Cis Peptide Bonds (0, 0)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

PROSITE Motifs (0, 0)

Exons (0, 0)

Sequences/Alignments

NMR Structure

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
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	UniProt sequence: complete aligned part

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Chain A from PDB  Type:PROTEIN  Length:11
 aligned with ANOP_ANOSM | P0C005 from UniProtKB/Swiss-Prot  Length:10

    Alignment length:11
                                    10     
                                    10 
            ANOP_ANOSM    1 GLLKRIKTLL-  -
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author .hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                  2mjt A  1 GLLKFIKWLLx 11
                                    10|
                                     11-NH2

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	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

Classification and Annotation

SCOP Domains (0, 0)

CATH Domains (0, 0)

Pfam Domains (0, 0)

Gene Ontology (2, 2)

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