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(-) Description

Title :  ANOPLIN R5W STRUCTURE IN DPC MICELLES
 
Authors :  L. Uggerhoej, T. J. Poulsen, R. Wimmer
Date :  16 Jan 14  (Deposition) - 03 Dec 14  (Release) - 28 Jan 15  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Amphipathic Helix, Antimicrobial Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. E. Uggerhj, T. J. Poulsen, J. K. Munk, M. Fredborg, T. E. Sondergaard N. Frimodt-Moller, P. R. Hansen, R. Wimmer
Rational Design Of Alpha-Helical Antimicrobial Peptides: Do'S And Don'Ts.
Chembiochem V. 16 242 2015
PubMed-ID: 25530580  |  Reference-DOI: 10.1002/CBIC.201402581

(-) Compounds

Molecule 1 - ANOPLIN
    Chains: A
    Engineered: YES
    Mutation: YES
    Organism Common: SOLITARY WASP
    Organism Scientific: ANOPLIUS SAMARIENSIS
    Organism Taxid: 200614
    Synonym: AS-183
    Synthetic: YES

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 67)

NMR Structure (3, 67)
No.NameCountTypeFull Name
1DPV65Ligand/IonDODECYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE
2NH21Mod. Amino AcidAMINO GROUP
3UNX1Ligand/IonUNKNOWN ATOM OR ION
NMR Structure * (3, 67)
No.NameCountTypeFull Name
1DPV65Ligand/IonDODECYL 2-(TRIMETHYLAMMONIO)ETHYL PHOSPHATE
2NH21Mod. Amino AcidAMINO GROUP
3UNX1Ligand/IonUNKNOWN ATOM OR ION

(-) Sites  (60, 60)

NMR Structure (60, 60)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREDPV A:129BINDING SITE FOR RESIDUE DPV A 102
02AC2SOFTWAREDPV A:141BINDING SITE FOR RESIDUE DPV A 103
03AC3SOFTWAREDPV A:131 , DPV A:144BINDING SITE FOR RESIDUE DPV A 104
04AC4SOFTWAREDPV A:106 , DPV A:119 , DPV A:121BINDING SITE FOR RESIDUE DPV A 105
05AC5SOFTWAREDPV A:105 , DPV A:107BINDING SITE FOR RESIDUE DPV A 106
06AC6SOFTWAREDPV A:106 , DPV A:135BINDING SITE FOR RESIDUE DPV A 107
07AC7SOFTWAREDPV A:109 , DPV A:122 , DPV A:123 , DPV A:155BINDING SITE FOR RESIDUE DPV A 108
08AC8SOFTWAREDPV A:108 , DPV A:110 , DPV A:111 , DPV A:156 , DPV A:157BINDING SITE FOR RESIDUE DPV A 109
09AC9SOFTWAREDPV A:109 , DPV A:111 , DPV A:124BINDING SITE FOR RESIDUE DPV A 110
10BC1SOFTWAREDPV A:109 , DPV A:110 , DPV A:137 , DPV A:139 , DPV A:157BINDING SITE FOR RESIDUE DPV A 111
11BC2SOFTWAREDPV A:138BINDING SITE FOR RESIDUE DPV A 112
12BC3SOFTWAREDPV A:138BINDING SITE FOR RESIDUE DPV A 113
13BC4SOFTWAREDPV A:115 , DPV A:127BINDING SITE FOR RESIDUE DPV A 114
14BC5SOFTWAREDPV A:114 , DPV A:128 , DPV A:142 , DPV A:143BINDING SITE FOR RESIDUE DPV A 115
15BC6SOFTWAREDPV A:118 , DPV A:128 , DPV A:143 , DPV A:144BINDING SITE FOR RESIDUE DPV A 117
16BC7SOFTWAREDPV A:117 , DPV A:128 , DPV A:161BINDING SITE FOR RESIDUE DPV A 118
17BC8SOFTWAREDPV A:105 , DPV A:120 , DPV A:146BINDING SITE FOR RESIDUE DPV A 119
18BC9SOFTWAREDPV A:119 , DPV A:145 , DPV A:146 , DPV A:162BINDING SITE FOR RESIDUE DPV A 120
19CC1SOFTWAREDPV A:105 , DPV A:161BINDING SITE FOR RESIDUE DPV A 121
20CC2SOFTWAREDPV A:108 , DPV A:123 , DPV A:145BINDING SITE FOR RESIDUE DPV A 122
21CC3SOFTWAREDPV A:108 , DPV A:122 , DPV A:124BINDING SITE FOR RESIDUE DPV A 123
22CC4SOFTWAREDPV A:110 , DPV A:123 , DPV A:148BINDING SITE FOR RESIDUE DPV A 124
23CC5SOFTWAREDPV A:127 , DPV A:137 , DPV A:142BINDING SITE FOR RESIDUE DPV A 126
24CC6SOFTWAREDPV A:114 , DPV A:126BINDING SITE FOR RESIDUE DPV A 127
25CC7SOFTWAREDPV A:115 , DPV A:117 , DPV A:118BINDING SITE FOR RESIDUE DPV A 128
26CC8SOFTWAREDPV A:102 , DPV A:130BINDING SITE FOR RESIDUE DPV A 129
27CC9SOFTWAREDPV A:129BINDING SITE FOR RESIDUE DPV A 130
28DC1SOFTWAREDPV A:104 , DPV A:144BINDING SITE FOR RESIDUE DPV A 131
29DC2SOFTWAREDPV A:133BINDING SITE FOR RESIDUE DPV A 132
30DC3SOFTWAREDPV A:132 , DPV A:154BINDING SITE FOR RESIDUE DPV A 133
31DC4SOFTWAREDPV A:155BINDING SITE FOR RESIDUE DPV A 134
32DC5SOFTWAREDPV A:107 , DPV A:155BINDING SITE FOR RESIDUE DPV A 135
33DC6SOFTWARELEU A:10 , NH2 A:11 , DPV A:155BINDING SITE FOR RESIDUE DPV A 136
34DC7SOFTWAREDPV A:111 , DPV A:126 , DPV A:145 , DPV A:158BINDING SITE FOR RESIDUE DPV A 137
35DC8SOFTWAREDPV A:112 , DPV A:113BINDING SITE FOR RESIDUE DPV A 138
36DC9SOFTWAREDPV A:111 , DPV A:158 , DPV A:163BINDING SITE FOR RESIDUE DPV A 139
37EC1SOFTWAREDPV A:141BINDING SITE FOR RESIDUE DPV A 140
38EC2SOFTWAREDPV A:103 , DPV A:140BINDING SITE FOR RESIDUE DPV A 141
39EC3SOFTWAREDPV A:115 , DPV A:126 , DPV A:162BINDING SITE FOR RESIDUE DPV A 142
40EC4SOFTWAREDPV A:115 , DPV A:117 , DPV A:161 , DPV A:162BINDING SITE FOR RESIDUE DPV A 143
41EC5SOFTWAREDPV A:104 , DPV A:117 , DPV A:131BINDING SITE FOR RESIDUE DPV A 144
42EC6SOFTWAREDPV A:120 , DPV A:122 , DPV A:137BINDING SITE FOR RESIDUE DPV A 145
43EC7SOFTWAREDPV A:119 , DPV A:120 , DPV A:147 , DPV A:162BINDING SITE FOR RESIDUE DPV A 146
44EC8SOFTWAREDPV A:146 , DPV A:166BINDING SITE FOR RESIDUE DPV A 147
45EC9SOFTWAREDPV A:124BINDING SITE FOR RESIDUE DPV A 148
46FC1SOFTWAREDPV A:152BINDING SITE FOR RESIDUE DPV A 151
47FC2SOFTWAREDPV A:151 , DPV A:154BINDING SITE FOR RESIDUE DPV A 152
48FC3SOFTWAREDPV A:164BINDING SITE FOR RESIDUE DPV A 153
49FC4SOFTWAREDPV A:133 , DPV A:152BINDING SITE FOR RESIDUE DPV A 154
50FC5SOFTWAREDPV A:108 , DPV A:134 , DPV A:135 , DPV A:136 , DPV A:156BINDING SITE FOR RESIDUE DPV A 155
51FC6SOFTWAREDPV A:109 , DPV A:155 , DPV A:157 , DPV A:165BINDING SITE FOR RESIDUE DPV A 156
52FC7SOFTWAREDPV A:109 , DPV A:111 , DPV A:156 , DPV A:158 , DPV A:165BINDING SITE FOR RESIDUE DPV A 157
53FC8SOFTWAREDPV A:137 , DPV A:139 , DPV A:157 , DPV A:163 , DPV A:165BINDING SITE FOR RESIDUE DPV A 158
54FC9SOFTWAREDPV A:163BINDING SITE FOR RESIDUE DPV A 159
55GC1SOFTWAREDPV A:118 , DPV A:121 , DPV A:143BINDING SITE FOR RESIDUE DPV A 161
56GC2SOFTWAREDPV A:120 , DPV A:142 , DPV A:143 , DPV A:146BINDING SITE FOR RESIDUE DPV A 162
57GC3SOFTWAREDPV A:139 , DPV A:158 , DPV A:159BINDING SITE FOR RESIDUE DPV A 163
58GC4SOFTWAREGLY A:1 , LEU A:2 , LEU A:3 , DPV A:153BINDING SITE FOR RESIDUE DPV A 164
59GC5SOFTWAREDPV A:156 , DPV A:157 , DPV A:158BINDING SITE FOR RESIDUE DPV A 165
60GC6SOFTWAREDPV A:147BINDING SITE FOR RESIDUE DPV A 166

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 2MJR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MJR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MJR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MJR)

(-) Exons   (0, 0)

(no "Exon" information available for 2MJR)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:11
 aligned with ANOP_ANOSM | P0C005 from UniProtKB/Swiss-Prot  Length:10

    Alignment length:11
                                    10     
                                    10 
            ANOP_ANOSM    1 GLLKRIKTLL-  -
               SCOP domains ----------- SCOP domains
               CATH domains ----------- CATH domains
               Pfam domains ----------- Pfam domains
         Sec.struct. author hhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------- SAPs(SNPs)
                    PROSITE ----------- PROSITE
                 Transcript ----------- Transcript
                  2mjr A  1 GLLKWIKTLLx 11
                                    10|
                                     11-NH2
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 2MJR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MJR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MJR)

(-) Gene Ontology  (2, 2)

NMR Structure(hide GO term definitions)
Chain A   (ANOP_ANOSM | P0C005)
biological process
    GO:0042742    defense response to bacterium    Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
cellular component
    GO:0005576    extracellular region    The space external to the outermost structure of a cell. For cells without external protective or external encapsulating structures this refers to space outside of the plasma membrane. This term covers the host cell environment outside an intracellular parasite.

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 Related Entries

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UniProtKB/Swiss-Prot
        ANOP_ANOSM | P0C005: 2mjq 2mjs 2mjt

(-) Related Entries Specified in the PDB File

2mjq 2mjs 2mjt