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(-) Description

Title :  STRUCTURE OF PLASMODIUM YOELII MEROZOITE SURFACE PROTEIN 1 - C-TERMINAL DOMAIN
 
Authors :  R. D. Curd, B. Birdsall, M. Kadekoppala, S. Ogun, G. Kelly, A. A. Holder
Date :  03 Nov 13  (Deposition) - 12 Feb 14  (Release) - 12 Feb 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (20x)
NMR Structure *:  A  (1x)
Keywords :  Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  R. D. Curd, B. Birdsall, M. Kadekoppala, S. A. Ogun, G. Kelly, A. A. Holder
The Structure Of Plasmodium Yoelii Merozoite Surface Protei 119, Antibody Specificity And Implications For Malaria Vaccine Design
Open Biology V. 4 30091 2014
PubMed-ID: 24403012  |  Reference-DOI: 10.1098/RSOB.130091

(-) Compounds

Molecule 1 - MEROZOITE SURFACE PROTEIN 1
    Chains: A
    Engineered: YES
    Expression System: KOMAGATAELLA PASTORIS
    Expression System Taxid: 4922
    Expression System Vector: PPIC9K
    Expression System Vector Type: VECTOR
    Fragment: C-TERMINAL DOMAIN, UNP RESIDUES 1656-1754
    Gene: MSP-1
    Mutation: YES
    Organism Scientific: PLASMODIUM YOELII YOELII
    Organism Taxid: 73239

 Structural Features

(-) Chains, Units

  1
NMR Structure (20x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 2MGP)

(-) Sites  (0, 0)

(no "Site" information available for 2MGP)

(-) SS Bonds  (5, 5)

NMR Structure
No.Residues
1A:8 -A:20
2A:32 -A:44
3A:52 -A:65
4A:59 -A:79
5A:81 -A:95

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 2MGP)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 2MGP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 2MGP)

(-) Exons   (0, 0)

(no "Exon" information available for 2MGP)

(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:99
 aligned with MSP1_PLAYO | P13828 from UniProtKB/Swiss-Prot  Length:1772

    Alignment length:99
                                  1665      1675      1685      1695      1705      1715      1725      1735      1745         
          MSP1_PLAYO   1656 GVDPKHVCVDTRDIPKNAGCFRDDNGTEEWRCLLGYKKGEGNTCVENNNPTCDINNGGCDPTASCQNAESTENSKKIICTCKEPTPNAYYEGVFCSSSS 1754
               SCOP domains d2mgpa1 A:1-48                                  d2mgpa2 A:49-99 Merozoite surface protein 1 (MSP-1) SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeee.....eeeee...eee.....eee.......hhhhhh...eeeee.........eeeee......ee....ee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------- Transcript
                2mgp A    1 GVDPKHVCVDTRDIPKNAGCFRDDDGTEEWRCLLGYKKGEGNTCVENNNPTCDINNGGCDPTASCQNAESTENSKKIICTCKEPTPNAYYEGVFCSSSS   99
                                    10        20        30        40        50        60        70        80        90
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (1, 2)

NMR Structure
(-)
Class: Small proteins (3458)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 2MGP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 2MGP)

(-) Gene Ontology  (4, 4)

NMR Structure(hide GO term definitions)
Chain A   (MSP1_PLAYO | P13828)
biological process
    GO:0009405    pathogenesis    The set of specific processes that generate the ability of an organism to induce an abnormal, generally detrimental state in another organism.
cellular component
    GO:0031225    anchored component of membrane    The component of a membrane consisting of the gene products that are tethered to the membrane only by a covalently attached anchor, such as a lipid group that is embedded in the membrane. Gene products with peptide sequences that are embedded in the membrane are excluded from this grouping.
    GO:0016020    membrane    A lipid bilayer along with all the proteins and protein complexes embedded in it an attached to it.
    GO:0005886    plasma membrane    The membrane surrounding a cell that separates the cell from its external environment. It consists of a phospholipid bilayer and associated proteins.

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  2mgp
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  MSP1_PLAYO | P13828
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        MSP1_PLAYO | P13828: 2mgr

(-) Related Entries Specified in the PDB File

2mgr