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(-) Description

Title :  NMR SOLUTION STRUCTURE OF THE LA MOTIF (N-TERMINAL DOMAIN, NTD) OF DICTYOSTELIUM DISCOIDEUM LA PROTEIN
 
Authors :  D. J. Vourtsis, C. T. Chasapis, M. Apostolidi, C. Stathopoulos, D. Bent G. A. Spyroulias
Date :  11 Mar 13  (Deposition) - 12 Mar 14  (Release) - 12 Mar 14  (Revision)
Method :  SOLUTION NMR
Resolution :  NOT APPLICABLE
Chains :  NMR Structure  :  A  (31x)
NMR Structure *:  A  (1x)
Keywords :  Lupus Protein, La Motif, Rna Binding Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. J. Vourtsis, C. T. Chasapis, M. Apostolidi, C. Stathopoulos, D. Bentrop, G. A. Spyroulias
Nmr Solution Structure Of The La Motif (N-Terminal Domain, Ntd) Of Dictyostelium Discoideum La Protein
To Be Published
PubMed: search
(for further references see the PDB file header)

(-) Compounds

Molecule 1 - LUPUS LA PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: LA-TYPE RNA-BINDING DOMAIN
    Gene: DDB_0204655, DDB_G0281763
    Organism Common: SLIME MOLD
    Organism Scientific: DICTYOSTELIUM DISCOIDEUM
    Organism Taxid: 44689

 Structural Features

(-) Chains, Units

  1
NMR Structure (31x): A
NMR Structure * (1x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

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(-) Sites  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

NMR Structure
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:91
 aligned with Q54TG6_DICDI | Q54TG6 from UniProtKB/TrEMBL  Length:354

    Alignment length:91
                                    10        20        30        40        50        60        70        80        90 
          Q54TG6_DICDI    1 MSEETSTQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQLITEALKKSTRLQVSEDGKMVRRLDPLPENID 91
               SCOP domains d2m5wa_ A: automated matches                                                                SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhh.....hhhhhhhhh.......hhhhhhh.hhhhhhhhhhhhhhhhhhh...eee......eee......... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                  2m5w A  1 MSEETSTQILKQVEYYFSDSNFPRDKFLRSEAAKNVDNYISIDVIASFNRMKTISTDLQLITEALKKSTRLQVSEDGKMVRRLDPLPENID 91
                                    10        20        30        40        50        60        70        80        90
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 Classification and Annotation

(-) SCOP Domains  (1, 1)

NMR Structure
(-)
Class: All alpha proteins (14657)

(-) CATH Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (7, 7)

NMR Structure(hide GO term definitions)
Chain A   (Q54TG6_DICDI | Q54TG6)
molecular function
    GO:0003723    RNA binding    Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
    GO:0003676    nucleic acid binding    Interacting selectively and non-covalently with any nucleic acid.
    GO:0000166    nucleotide binding    Interacting selectively and non-covalently with a nucleotide, any compound consisting of a nucleoside that is esterified with (ortho)phosphate or an oligophosphate at any hydroxyl group on the ribose or deoxyribose.
biological process
    GO:0006396    RNA processing    Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
cellular component
    GO:0030529    intracellular ribonucleoprotein complex    An intracellular macromolecular complex containing both protein and RNA molecules.
    GO:0005634    nucleus    A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
    GO:0045335    phagocytic vesicle    A membrane-bounded intracellular vesicle that arises from the ingestion of particulate material by phagocytosis.

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(-) Related Entries Specified in the PDB File

1s29 LA AUTOANTIGEN N-TERMINAL DOMAIN
1s7a NMR STRUCTURE OF THE LA MOTIF OF HUMAN LA PROTEIN
2von CRYSTAL STRUCTURE OF N-TERMINAL DOMAINS OF HUMAN LA PROTEIN COMPLEXED WITH RNA OLIGOMER AUAAUUU RELATED ID: 18620 RELATED DB: BMRB RRM DOMAIN RELATED ID: 18621 RELATED DB: BMRB